Wall clock time and date at job start Tue Mar 31 2020 18:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00037 * 2 1 4 4 C 1.52999 * 109.47019 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47334 * 65.64201 * 4 3 2 6 6 C 1.36874 * 119.99949 * 94.14478 * 5 4 3 7 7 H 1.08006 * 119.99839 * 232.97931 * 6 5 4 8 8 C 1.39045 * 120.00198 * 52.97223 * 6 5 4 9 9 N 1.31361 * 120.00345 * 198.68947 * 8 6 5 10 10 Si 1.86804 * 119.99794 * 18.69382 * 8 6 5 11 11 H 1.48496 * 109.46968 * 94.70062 * 10 8 6 12 12 H 1.48502 * 109.47059 * 214.69703 * 10 8 6 13 13 H 1.48495 * 109.47235 * 334.69791 * 10 8 6 14 14 C 1.34777 * 120.00555 * 274.14470 * 5 4 3 15 15 O 1.21598 * 119.99171 * 357.35382 * 14 5 4 16 16 C 1.47733 * 120.00336 * 177.36037 * 14 5 4 17 17 C 1.39685 * 120.11957 * 40.37771 * 16 14 5 18 18 C 1.37955 * 119.98719 * 179.74247 * 17 16 14 19 19 C 1.38272 * 120.22794 * 0.55661 * 18 17 16 20 20 C 1.38963 * 120.23857 * 359.70041 * 19 18 17 21 21 N 1.39969 * 119.99678 * 180.02562 * 20 19 18 22 22 C 1.34774 * 120.00054 * 143.96305 * 21 20 19 23 23 O 1.21587 * 120.00479 * 3.99254 * 22 21 20 24 24 N 1.34780 * 119.99953 * 183.99833 * 22 21 20 25 25 C 1.46506 * 119.99677 * 179.97438 * 24 22 21 26 26 C 1.46496 * 120.00455 * 359.97438 * 24 22 21 27 27 C 1.38607 * 120.00711 * 0.02562 * 20 19 18 28 28 H 1.09003 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47172 * 299.99854 * 1 2 3 30 30 H 1.09001 * 109.47080 * 60.00309 * 1 2 3 31 31 H 1.09001 * 109.47069 * 59.99859 * 3 2 1 32 32 H 1.09002 * 109.47084 * 300.00168 * 3 2 1 33 33 H 1.08999 * 109.46721 * 185.64231 * 4 3 2 34 34 H 1.08998 * 109.46741 * 305.64050 * 4 3 2 35 35 H 0.96996 * 120.00730 * 179.97438 * 9 8 6 36 36 H 1.08004 * 120.00394 * 0.02562 * 17 16 14 37 37 H 1.08006 * 119.88747 * 180.27256 * 18 17 16 38 38 H 1.08006 * 119.88112 * 179.71690 * 19 18 17 39 39 H 0.97006 * 120.00417 * 323.96375 * 21 20 19 40 40 H 1.09003 * 109.47095 * 89.99932 * 25 24 22 41 41 H 1.09002 * 109.46721 * 209.99765 * 25 24 22 42 42 H 1.08999 * 109.47237 * 330.00019 * 25 24 22 43 43 H 1.09001 * 109.47165 * 89.99687 * 26 24 22 44 44 H 1.08993 * 109.47312 * 210.00549 * 26 24 22 45 45 H 1.09010 * 109.46671 * 330.00437 * 26 24 22 46 46 H 1.07994 * 120.11649 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5784 -1.2591 6 6 4.3493 1.3743 -2.3085 7 1 3.8993 1.2326 -3.2801 8 6 5.3069 2.3654 -2.1237 9 7 5.4068 3.3512 -2.9862 10 14 6.4513 2.2950 -0.6490 11 1 7.7199 1.6285 -1.0383 12 1 6.7404 3.6742 -0.1805 13 1 5.8035 1.5265 0.4441 14 6 4.0161 -0.7630 -1.3838 15 8 3.7313 -1.4701 -0.4364 16 6 4.4051 -1.3742 -2.6712 17 6 5.4481 -0.8253 -3.4210 18 6 5.8126 -1.4015 -4.6203 19 6 5.1413 -2.5153 -5.0900 20 6 4.0988 -3.0659 -4.3545 21 7 3.4231 -4.1938 -4.8345 22 6 2.9891 -5.1362 -3.9743 23 8 3.1198 -4.9727 -2.7766 24 7 2.4103 -6.2601 -4.4417 25 6 1.9392 -7.2847 -3.5066 26 6 2.2524 -6.4571 -5.8848 27 6 3.7281 -2.4984 -3.1455 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.9784 2.1754 0.1004 34 1 3.8506 0.5588 0.8343 35 1 6.0746 4.0428 -2.8572 36 1 5.9720 0.0472 -3.0596 37 1 6.6222 -0.9783 -5.1965 38 1 5.4284 -2.9591 -6.0319 39 1 3.2670 -4.2972 -5.7863 40 1 0.9029 -7.0812 -3.2365 41 1 2.0059 -8.2652 -3.9782 42 1 2.5580 -7.2701 -2.6095 43 1 3.1326 -6.9635 -6.2808 44 1 1.3676 -7.0649 -6.0738 45 1 2.1395 -5.4892 -6.3734 46 1 2.9184 -2.9251 -2.5722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468721329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:57 Heat of formation + Delta-G solvation = -68.199908 kcal Electronic energy + Delta-G solvation = -29937.315083 eV Core-core repulsion = 25827.903979 eV Total energy + Delta-G solvation = -4109.411104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83174 -40.91680 -39.32254 -38.47048 -36.73951 -36.60538 -35.80492 -33.99625 -32.24871 -31.11507 -30.30221 -28.73439 -27.27764 -26.86850 -26.80128 -25.00894 -23.44586 -23.32048 -21.16987 -21.04522 -19.77295 -18.92633 -18.22858 -17.65135 -17.38761 -17.17480 -17.08755 -16.89787 -16.40586 -16.21375 -16.13660 -15.57666 -15.39416 -15.12942 -15.01299 -14.68987 -14.41450 -14.27778 -14.06351 -13.68850 -13.52679 -13.44506 -13.42957 -13.29548 -12.97822 -12.84803 -12.72926 -12.60546 -12.42692 -12.20589 -11.99785 -11.77209 -11.44593 -11.19884 -10.99585 -10.61469 -10.43753 -9.79270 -9.75307 -9.47070 -8.98826 -8.45354 -6.18376 0.18789 0.49696 1.25992 1.36466 1.47450 1.51705 1.92829 2.15139 2.24846 2.58818 2.83972 2.91793 2.96089 3.17509 4.03666 4.10439 4.17870 4.21277 4.26692 4.32251 4.33547 4.42293 4.47664 4.49430 4.50905 4.54079 4.60310 4.62972 4.67442 4.75444 4.77033 4.86489 4.90841 4.93717 5.07896 5.27812 5.47859 5.49332 5.56522 5.60615 5.74953 5.82422 6.13206 6.18551 6.28387 6.37291 6.80858 7.02412 7.42032 7.43692 7.86745 8.66929 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.004045 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.723594 B = 6921.168888 C = 8398.547742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.468 5.468 6 C -0.331 4.331 7 H 0.069 0.931 8 C 0.051 3.949 9 N -0.888 5.888 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.268 1.268 13 H -0.255 1.255 14 C 0.524 3.476 15 O -0.598 6.598 16 C -0.112 4.112 17 C -0.083 4.083 18 C -0.113 4.113 19 C -0.111 4.111 20 C 0.137 3.863 21 N -0.666 5.666 22 C 0.687 3.313 23 O -0.619 6.619 24 N -0.632 5.632 25 C 0.099 3.901 26 C 0.070 3.930 27 C -0.094 4.094 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.281 0.719 36 H 0.127 0.873 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.424 0.576 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 -13.894 -9.517 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.190 5.190 6 C -0.459 4.459 7 H 0.087 0.913 8 C -0.155 4.155 9 N -0.523 5.523 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.193 1.193 13 H -0.179 1.179 14 C 0.315 3.685 15 O -0.483 6.483 16 C -0.116 4.116 17 C -0.102 4.102 18 C -0.131 4.131 19 C -0.132 4.132 20 C 0.043 3.957 21 N -0.318 5.318 22 C 0.389 3.611 23 O -0.499 6.499 24 N -0.370 5.370 25 C -0.043 4.043 26 C -0.071 4.071 27 C -0.116 4.116 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.176 0.824 38 H 0.189 0.811 39 H 0.266 0.734 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.187 -14.173 -8.270 17.209 hybrid contribution 0.107 0.681 0.517 0.862 sum -5.081 -13.492 -7.752 16.369 Atomic orbital electron populations 1.22840 0.80544 1.02842 1.00602 1.88122 1.20667 1.28163 1.95421 1.22940 0.93758 0.84816 1.00802 1.21825 0.93333 0.98265 0.87924 1.43463 1.58985 1.03576 1.12965 1.18583 1.22306 1.14166 0.90839 0.91307 1.25816 0.96816 0.94235 0.98593 1.69767 1.34029 1.10264 1.38261 0.86535 0.80722 0.78546 0.82003 1.19910 1.19325 1.17926 1.18946 0.78524 0.83022 0.88031 1.90632 1.53247 1.62690 1.41695 1.19793 0.99359 0.96606 0.95799 1.21693 0.95794 0.97994 0.94713 1.21244 1.00723 0.95766 0.95403 1.21280 0.93004 0.97231 1.01643 1.17323 0.94869 0.88672 0.94862 1.42367 1.59505 1.19156 1.10789 1.16273 0.78951 0.81130 0.84744 1.91008 1.63170 1.79571 1.16121 1.47072 1.62417 1.17996 1.09485 1.21668 0.99053 0.90493 0.93120 1.22098 1.04291 1.03512 0.77234 1.21022 1.00001 0.93727 0.96827 0.89893 0.92220 0.94083 0.90330 0.93478 0.89247 0.92181 0.90914 0.85565 0.82390 0.81063 0.73441 0.92640 0.87302 0.93141 0.90587 0.88099 0.90486 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.17 16 2 O -0.40 -18.09 9.15 -135.76 -1.24 -19.33 16 3 C 0.05 2.22 6.28 71.98 0.45 2.68 16 4 C 0.11 5.10 3.90 86.38 0.34 5.43 16 5 N -0.47 -24.22 1.85 -638.94 -1.18 -25.40 16 6 C -0.33 -17.47 6.40 84.10 0.54 -16.93 16 7 H 0.07 3.99 7.60 -2.91 -0.02 3.97 16 8 C 0.05 2.63 4.79 84.96 0.41 3.03 16 9 N -0.89 -47.19 13.95 21.68 0.30 -46.89 16 10 Si 0.90 40.57 26.56 68.60 1.82 42.40 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.26 -11.66 5.43 99.48 0.54 -11.12 16 14 C 0.52 28.60 6.86 86.75 0.60 29.19 16 15 O -0.60 -35.89 15.51 9.20 0.14 -35.75 16 16 C -0.11 -5.48 5.36 -20.10 -0.11 -5.59 16 17 C -0.08 -3.58 8.14 22.55 0.18 -3.39 16 18 C -0.11 -3.69 10.02 22.21 0.22 -3.47 16 19 C -0.11 -3.12 9.96 22.45 0.22 -2.89 16 20 C 0.14 4.72 6.27 38.10 0.24 4.96 16 21 N -0.67 -17.67 5.21 -317.28 -1.65 -19.32 16 22 C 0.69 21.48 8.11 179.05 1.45 22.93 16 23 O -0.62 -27.07 13.43 -3.99 -0.05 -27.13 16 24 N -0.63 -13.03 3.27 -890.16 -2.91 -15.95 16 25 C 0.10 1.80 10.44 127.77 1.33 3.13 16 26 C 0.07 0.64 10.24 127.77 1.31 1.95 16 27 C -0.09 -4.29 8.28 22.67 0.19 -4.10 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.09 3.91 5.38 -2.39 -0.01 3.90 16 34 H 0.06 2.92 7.41 -2.39 -0.02 2.90 16 35 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 36 H 0.13 5.95 5.91 -2.91 -0.02 5.93 16 37 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.42 6.98 6.52 -92.70 -0.60 6.38 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 1.06 8.07 -2.39 -0.02 1.04 16 42 H 0.05 1.22 7.42 -2.39 -0.02 1.20 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.10 0.47 8.07 -2.39 -0.02 0.45 16 45 H 0.08 0.55 6.31 -2.38 -0.02 0.53 16 46 H 0.10 5.44 6.31 -2.91 -0.02 5.42 16 Total: -1.00 -82.73 375.07 4.08 -78.66 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.24 Total: 29.63 kcal Atomic # 6 Polarization: 30.47 SS G_CDS: 8.62 Total: 39.09 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -5.45 Total: -107.56 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -1.15 Total: -82.21 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.82 Total: 42.40 kcal Total: -82.73 4.08 -78.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468721329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.456 kcal (2) G-P(sol) polarization free energy of solvation -82.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds