Wall clock time and date at job start Tue Mar 31 2020 18:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99970 * 2 1 4 4 C 1.53002 * 109.47237 * 270.00680 * 3 2 1 5 5 N 1.46906 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47030 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00169 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00058 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.38957 * 120.00049 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99604 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47161 * 60.00224 * 14 12 10 16 16 H 1.48506 * 109.46664 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47253 * 299.99863 * 14 12 10 18 18 C 1.34771 * 119.99789 * 180.02562 * 2 1 3 19 19 O 1.21285 * 119.99914 * 179.97438 * 18 2 1 20 20 C 1.50706 * 120.00395 * 359.97438 * 18 2 1 21 21 H 1.09004 * 115.54611 * 34.28427 * 20 18 2 22 22 C 1.52990 * 117.49910 * 248.61356 * 20 18 2 23 23 C 1.52995 * 117.50075 * 179.97438 * 20 18 2 24 24 H 1.09000 * 117.49845 * 0.02562 * 23 20 18 25 25 C 1.50696 * 117.50097 * 214.98174 * 23 20 18 26 26 C 1.34518 * 125.79108 * 119.99984 * 25 23 20 27 27 C 1.41381 * 106.84273 * 180.02562 * 26 25 23 28 28 C 1.34513 * 106.83962 * 359.97438 * 27 26 25 29 29 O 1.34302 * 125.79111 * 299.69583 * 25 23 20 30 30 H 1.08998 * 109.47131 * 89.99861 * 1 2 3 31 31 H 1.08998 * 109.46503 * 209.99644 * 1 2 3 32 32 H 1.08996 * 109.46669 * 329.99368 * 1 2 3 33 33 H 1.09001 * 109.47059 * 150.00623 * 3 2 1 34 34 H 1.09004 * 109.47074 * 30.00579 * 3 2 1 35 35 H 1.08992 * 109.47056 * 59.99825 * 4 3 2 36 36 H 1.09004 * 109.47006 * 299.99941 * 4 3 2 37 37 H 1.00902 * 111.00068 * 56.04103 * 5 4 3 38 38 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 39 39 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 40 40 H 0.97000 * 120.00220 * 0.02562 * 9 7 6 41 41 H 0.97000 * 119.99698 * 179.97438 * 13 12 10 42 42 H 1.08998 * 117.50358 * 359.97438 * 22 20 18 43 43 H 1.09005 * 117.50036 * 145.02196 * 22 20 18 44 44 H 1.08001 * 126.58107 * 359.96941 * 26 25 23 45 45 H 1.08002 * 126.58356 * 179.97438 * 27 26 25 46 46 H 1.08003 * 125.78986 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1875 2.9824 -1.4425 6 6 3.4511 3.4381 -2.8138 7 6 4.2043 4.7428 -2.7736 8 8 4.4935 5.2434 -1.7074 9 7 4.5575 5.3527 -3.9223 10 6 5.2432 6.5393 -3.8857 11 1 5.5007 6.9851 -2.9363 12 6 5.6069 7.1684 -5.0701 13 7 5.2931 6.6262 -6.2253 14 14 6.5405 8.7856 -5.0201 15 1 7.8285 8.5918 -4.3067 16 1 6.8065 9.2466 -6.4066 17 1 5.7284 9.8043 -4.3076 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4724 -0.0005 21 1 0.4464 -2.4730 -0.5541 22 6 1.4612 -3.3318 1.2629 23 6 2.2074 -3.7627 -0.0017 24 1 3.2933 -3.6676 -0.0021 25 6 1.6571 -4.9377 -0.7682 26 6 2.2603 -5.5569 -1.7988 27 6 1.3970 -6.5967 -2.2140 28 6 0.3181 -6.5511 -1.4119 29 8 0.4837 -5.5479 -0.5345 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3632 0.8899 0.5139 33 1 3.1500 1.1383 0.5137 34 1 1.6085 2.0283 0.5139 35 1 1.5000 1.8408 -1.9562 36 1 3.0415 0.9508 -1.9565 37 1 4.0450 2.9045 -0.9165 38 1 4.0469 2.6902 -3.3370 39 1 2.5057 3.5808 -3.3374 40 1 4.3266 4.9521 -4.7750 41 1 5.5466 7.0655 -7.0521 42 1 2.0565 -2.9536 2.0940 43 1 0.5723 -3.8984 1.5403 44 1 3.2196 -5.3071 -2.2275 45 1 1.5704 -7.2939 -3.0204 46 1 -0.5346 -7.2121 -1.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481282974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:41 Heat of formation + Delta-G solvation = -19.973534 kcal Electronic energy + Delta-G solvation = -27240.611924 eV Core-core repulsion = 23133.292073 eV Total energy + Delta-G solvation = -4107.319851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96879 -40.45557 -38.28966 -37.33835 -36.14574 -34.97363 -33.79213 -33.36402 -31.22564 -30.29197 -29.63329 -27.09164 -26.40466 -24.69969 -23.65005 -23.39988 -22.07638 -21.89879 -20.50593 -19.44167 -19.09459 -18.18466 -17.85514 -17.30467 -16.58048 -16.34478 -16.17775 -15.63936 -15.52280 -15.07283 -14.83971 -14.48762 -14.03448 -13.75883 -13.70161 -13.41964 -13.23944 -13.21368 -13.15106 -13.02876 -12.92224 -12.59139 -12.36872 -12.19103 -11.99156 -11.52700 -11.47931 -11.43981 -11.09400 -11.02805 -10.93840 -10.42403 -10.26486 -10.19442 -10.10469 -9.47815 -8.99218 -8.74494 -8.43619 -8.06181 -7.93826 -6.39417 -3.80258 1.24293 2.09598 2.29238 2.48660 2.69230 3.22117 3.27424 3.32124 3.41901 3.91305 3.93721 4.14934 4.16235 4.25972 4.43581 4.49832 4.63218 4.69653 4.80481 4.88582 4.96822 5.04459 5.14815 5.20405 5.22614 5.29351 5.37379 5.39608 5.41134 5.50807 5.53698 5.62593 5.71811 5.76328 5.86939 5.90294 6.00972 6.11387 6.20941 6.31036 6.74881 7.06194 7.19431 7.57215 7.65439 7.88205 8.08389 8.63650 9.19935 9.56591 10.08173 10.78316 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.001652 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.906952 B =16947.634743 C =17745.084953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.117 3.883 4 C 0.046 3.954 5 N -0.666 5.666 6 C 0.052 3.948 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.543 3.457 19 O -0.533 6.533 20 C -0.175 4.175 21 H 0.128 0.872 22 C -0.136 4.136 23 C -0.048 4.048 24 H 0.148 0.852 25 C 0.015 3.985 26 C -0.198 4.198 27 C -0.212 4.212 28 C -0.043 4.043 29 O -0.177 6.177 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -26.724 10.198 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C -0.005 4.005 4 C -0.085 4.085 5 N -0.299 5.299 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.331 3.669 19 O -0.410 6.410 20 C -0.197 4.197 21 H 0.146 0.854 22 C -0.174 4.174 23 C -0.066 4.066 24 H 0.166 0.834 25 C -0.035 4.035 26 C -0.217 4.217 27 C -0.231 4.231 28 C -0.110 4.110 29 O -0.073 6.073 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.168 0.832 45 H 0.167 0.833 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.159 -25.814 11.015 31.435 hybrid contribution 0.876 -0.193 -1.391 1.655 sum -13.283 -26.007 9.623 30.748 Atomic orbital electron populations 1.21880 0.79066 1.03518 1.02206 1.47701 1.07290 1.05864 1.73398 1.21474 0.98288 0.83537 0.97239 1.22258 0.99064 0.90598 0.96582 1.60030 1.28354 1.27825 1.13727 1.21655 1.00224 0.96115 0.90051 1.19789 0.85182 0.87312 0.85044 1.90520 1.59309 1.67256 1.29641 1.41851 1.49998 1.21407 1.06764 1.19669 1.30979 0.97782 0.94534 0.87943 1.25269 0.98181 0.99880 0.94632 1.69608 1.47093 1.40174 0.97489 0.85904 0.79821 0.81363 0.77039 1.19912 1.20996 1.19887 1.19548 0.87267 0.84224 0.75858 1.90730 1.13676 1.87134 1.49445 1.22412 1.02124 0.89854 1.05265 0.85378 1.23103 1.03059 1.00325 0.90892 1.20493 0.99173 0.87926 0.98996 0.83400 1.21309 0.85810 0.97277 0.99081 1.21606 1.02554 0.98511 0.99039 1.21874 0.95481 1.02145 1.03572 1.24036 1.01637 0.93046 0.92270 1.83960 1.35550 1.38486 1.49317 0.92357 0.90811 0.90417 0.89669 0.89149 0.91107 0.95142 0.82978 0.93817 0.89637 0.77453 0.91836 0.87120 0.87001 0.83210 0.83299 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.05 59.85 0.60 1.07 16 2 N -0.61 -5.96 2.87 -181.57 -0.52 -6.48 16 3 C 0.12 1.35 5.71 -4.04 -0.02 1.33 16 4 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 5 N -0.67 -11.26 6.13 -115.06 -0.70 -11.97 16 6 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 7 C 0.44 10.73 7.82 -10.99 -0.09 10.64 16 8 O -0.58 -16.19 15.78 5.54 0.09 -16.10 16 9 N -0.56 -14.63 5.29 -10.96 -0.06 -14.69 16 10 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 14 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 18 C 0.54 6.06 7.46 -10.99 -0.08 5.98 16 19 O -0.53 -7.97 15.84 5.55 0.09 -7.88 16 20 C -0.18 -1.43 4.50 -91.78 -0.41 -1.84 16 21 H 0.13 0.88 7.26 -51.93 -0.38 0.50 16 22 C -0.14 -0.92 9.87 -26.72 -0.26 -1.18 16 23 C -0.05 -0.40 5.75 -91.76 -0.53 -0.93 16 24 H 0.15 1.36 7.67 -51.93 -0.40 0.96 16 25 C 0.02 0.13 6.80 -35.63 -0.24 -0.11 16 26 C -0.20 -1.74 10.81 -39.70 -0.43 -2.17 16 27 C -0.21 -1.56 10.91 -39.70 -0.43 -1.99 16 28 C -0.04 -0.28 12.09 29.42 0.36 0.08 16 29 O -0.18 -1.49 10.36 5.71 0.06 -1.43 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.33 6.64 -51.93 -0.34 -0.01 16 32 H 0.08 0.41 7.89 -51.93 -0.41 0.00 16 33 H 0.08 1.11 7.42 -51.93 -0.39 0.72 16 34 H 0.09 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.35 6.21 8.43 -39.29 -0.33 5.88 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.11 0.62 7.96 -51.93 -0.41 0.20 16 44 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 46 H 0.20 0.55 8.06 -52.48 -0.42 0.13 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -34.94 396.87 -7.91 -42.86 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -6.71 Total: 13.35 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.84 Total: 4.23 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.56 Total: -57.31 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.23 Total: -25.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.94 -7.91 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481282974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.885 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds