Wall clock time and date at job start Tue Mar 31 2020 18:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99970 * 2 1 4 4 C 1.53002 * 109.47237 * 270.00680 * 3 2 1 5 5 N 1.46906 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47030 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00169 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00058 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.38957 * 120.00049 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99604 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47161 * 60.00224 * 14 12 10 16 16 H 1.48506 * 109.46664 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47253 * 299.99863 * 14 12 10 18 18 C 1.34771 * 119.99789 * 180.02562 * 2 1 3 19 19 O 1.21285 * 119.99914 * 179.97438 * 18 2 1 20 20 C 1.50706 * 120.00395 * 359.97438 * 18 2 1 21 21 H 1.09004 * 115.54611 * 34.28427 * 20 18 2 22 22 C 1.52990 * 117.49910 * 248.61356 * 20 18 2 23 23 C 1.52995 * 117.50075 * 179.97438 * 20 18 2 24 24 H 1.09000 * 117.49845 * 0.02562 * 23 20 18 25 25 C 1.50696 * 117.50097 * 214.98174 * 23 20 18 26 26 C 1.34518 * 125.79108 * 119.99984 * 25 23 20 27 27 C 1.41381 * 106.84273 * 180.02562 * 26 25 23 28 28 C 1.34513 * 106.83962 * 359.97438 * 27 26 25 29 29 O 1.34302 * 125.79111 * 299.69583 * 25 23 20 30 30 H 1.08998 * 109.47131 * 89.99861 * 1 2 3 31 31 H 1.08998 * 109.46503 * 209.99644 * 1 2 3 32 32 H 1.08996 * 109.46669 * 329.99368 * 1 2 3 33 33 H 1.09001 * 109.47059 * 150.00623 * 3 2 1 34 34 H 1.09004 * 109.47074 * 30.00579 * 3 2 1 35 35 H 1.08992 * 109.47056 * 59.99825 * 4 3 2 36 36 H 1.09004 * 109.47006 * 299.99941 * 4 3 2 37 37 H 1.00902 * 111.00068 * 56.04103 * 5 4 3 38 38 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 39 39 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 40 40 H 0.97000 * 120.00220 * 0.02562 * 9 7 6 41 41 H 0.97000 * 119.99698 * 179.97438 * 13 12 10 42 42 H 1.08998 * 117.50358 * 359.97438 * 22 20 18 43 43 H 1.09005 * 117.50036 * 145.02196 * 22 20 18 44 44 H 1.08001 * 126.58107 * 359.96941 * 26 25 23 45 45 H 1.08002 * 126.58356 * 179.97438 * 27 26 25 46 46 H 1.08003 * 125.78986 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1875 2.9824 -1.4425 6 6 3.4511 3.4381 -2.8138 7 6 4.2043 4.7428 -2.7736 8 8 4.4935 5.2434 -1.7074 9 7 4.5575 5.3527 -3.9223 10 6 5.2432 6.5393 -3.8857 11 1 5.5007 6.9851 -2.9363 12 6 5.6069 7.1684 -5.0701 13 7 5.2931 6.6262 -6.2253 14 14 6.5405 8.7856 -5.0201 15 1 7.8285 8.5918 -4.3067 16 1 6.8065 9.2466 -6.4066 17 1 5.7284 9.8043 -4.3076 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4724 -0.0005 21 1 0.4464 -2.4730 -0.5541 22 6 1.4612 -3.3318 1.2629 23 6 2.2074 -3.7627 -0.0017 24 1 3.2933 -3.6676 -0.0021 25 6 1.6571 -4.9377 -0.7682 26 6 2.2603 -5.5569 -1.7988 27 6 1.3970 -6.5967 -2.2140 28 6 0.3181 -6.5511 -1.4119 29 8 0.4837 -5.5479 -0.5345 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3632 0.8899 0.5139 33 1 3.1500 1.1383 0.5137 34 1 1.6085 2.0283 0.5139 35 1 1.5000 1.8408 -1.9562 36 1 3.0415 0.9508 -1.9565 37 1 4.0450 2.9045 -0.9165 38 1 4.0469 2.6902 -3.3370 39 1 2.5057 3.5808 -3.3374 40 1 4.3266 4.9521 -4.7750 41 1 5.5466 7.0655 -7.0521 42 1 2.0565 -2.9536 2.0940 43 1 0.5723 -3.8984 1.5403 44 1 3.2196 -5.3071 -2.2275 45 1 1.5704 -7.2939 -3.0204 46 1 -0.5346 -7.2121 -1.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481282974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:41 Heat of formation + Delta-G solvation = -44.755547 kcal Electronic energy + Delta-G solvation = -27241.686553 eV Core-core repulsion = 23133.292073 eV Total energy + Delta-G solvation = -4108.394480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53418 -41.27806 -40.18263 -38.14700 -37.15993 -36.26552 -35.71591 -33.93440 -33.29837 -31.30568 -30.35804 -28.15941 -27.51031 -26.19334 -24.69370 -24.16088 -22.94020 -22.62167 -21.20503 -21.04219 -20.09429 -19.88139 -18.82720 -18.00139 -17.87994 -17.40923 -17.08195 -16.85566 -16.56170 -16.36014 -15.99919 -15.83144 -15.50410 -15.26025 -14.87272 -14.48109 -14.27547 -13.94908 -13.85381 -13.77674 -13.72136 -13.53159 -13.45859 -13.38306 -13.09807 -12.92707 -12.88050 -12.74691 -12.44544 -12.19790 -12.12631 -11.95771 -11.66658 -11.51798 -10.97770 -10.84428 -10.41452 -10.04059 -9.78109 -9.46696 -9.31242 -8.47967 -5.97296 0.66326 1.35351 1.39493 1.41324 1.52664 1.65697 1.81835 2.01876 2.03520 2.29020 2.78212 2.93398 3.18717 3.32526 3.48629 3.53921 3.67248 3.90581 3.99204 4.08979 4.11596 4.15664 4.26065 4.33099 4.35219 4.44027 4.47435 4.54425 4.60564 4.69660 4.75893 4.82196 4.88518 4.91388 4.97215 5.01001 5.03825 5.19115 5.38986 5.41736 5.57035 5.80647 6.03410 6.17775 6.25122 6.29895 6.57518 7.05140 7.10128 7.52997 8.08041 8.69227 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.001652 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.906952 B =16947.634743 C =17745.084953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.122 3.878 4 C 0.055 3.945 5 N -0.674 5.674 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.337 4.337 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.996 3.004 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.271 1.271 18 C 0.537 3.463 19 O -0.582 6.582 20 C -0.171 4.171 21 H 0.147 0.853 22 C -0.115 4.115 23 C -0.060 4.060 24 H 0.131 0.869 25 C 0.003 3.997 26 C -0.219 4.219 27 C -0.229 4.229 28 C -0.034 4.034 29 O -0.183 6.183 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.017 0.983 37 H 0.343 0.657 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.111 0.889 43 H 0.131 0.869 44 H 0.147 0.853 45 H 0.165 0.835 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -27.665 10.059 33.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C -0.001 4.001 4 C -0.075 4.075 5 N -0.307 5.307 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.209 5.209 10 C -0.467 4.467 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.196 1.196 18 C 0.326 3.674 19 O -0.462 6.462 20 C -0.192 4.192 21 H 0.165 0.835 22 C -0.153 4.153 23 C -0.079 4.079 24 H 0.149 0.851 25 C -0.047 4.047 26 C -0.239 4.239 27 C -0.248 4.248 28 C -0.101 4.101 29 O -0.079 6.079 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.036 0.964 37 H 0.162 0.838 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.230 0.770 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.165 0.835 45 H 0.183 0.817 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -16.414 -26.777 10.859 33.232 hybrid contribution 1.524 0.031 -1.349 2.036 sum -14.890 -26.746 9.510 32.054 Atomic orbital electron populations 1.22166 0.76451 1.05261 1.03366 1.47794 1.08818 1.04758 1.72385 1.21313 0.98093 0.84816 0.95872 1.22265 0.98838 0.88514 0.97920 1.60057 1.28144 1.29865 1.12605 1.21526 1.00536 0.93085 0.91515 1.20782 0.84242 0.88588 0.83904 1.90487 1.60663 1.68771 1.30922 1.41918 1.50272 1.21197 1.07487 1.19669 1.33242 0.99487 0.94273 0.90194 1.26083 0.98385 1.02901 0.93921 1.69671 1.47155 1.41312 0.97941 0.84954 0.78339 0.77148 0.77675 1.19731 1.19406 1.19573 1.20099 0.86897 0.85455 0.74942 1.90709 1.15864 1.87871 1.51741 1.22363 1.02135 0.88022 1.06662 0.83532 1.23183 1.03138 0.98924 0.90007 1.20386 0.98551 0.88263 1.00651 0.85100 1.21301 0.86330 0.97673 0.99361 1.21850 1.02999 0.99472 0.99537 1.22162 0.95680 1.02360 1.04624 1.24813 1.02217 0.92237 0.90846 1.83953 1.35174 1.38968 1.49851 0.91420 0.88716 0.89171 0.91739 0.87678 0.89449 0.96437 0.83842 0.92261 0.87360 0.76970 0.91231 0.87086 0.85052 0.83512 0.81696 0.74227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.05 127.77 1.28 1.94 16 2 N -0.61 -11.08 2.87 -846.75 -2.43 -13.52 16 3 C 0.12 2.75 5.71 86.38 0.49 3.24 16 4 C 0.05 1.42 6.01 86.30 0.52 1.94 16 5 N -0.67 -22.53 6.13 -517.93 -3.17 -25.70 16 6 C 0.07 2.39 6.17 85.56 0.53 2.92 16 7 C 0.44 21.55 7.82 87.66 0.69 22.23 16 8 O -0.62 -35.39 15.78 -3.07 -0.05 -35.44 16 9 N -0.57 -30.15 5.29 -306.98 -1.62 -31.77 16 10 C -0.34 -19.54 9.68 84.04 0.81 -18.73 16 11 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 12 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 13 N -0.92 -50.35 13.05 21.67 0.28 -50.06 16 14 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C 0.54 11.81 7.46 87.66 0.65 12.47 16 19 O -0.58 -18.10 15.84 -3.05 -0.05 -18.14 16 20 C -0.17 -2.58 4.50 -11.54 -0.05 -2.63 16 21 H 0.15 1.65 7.26 -2.39 -0.02 1.63 16 22 C -0.12 -1.38 9.87 30.60 0.30 -1.08 16 23 C -0.06 -1.01 5.75 -11.53 -0.07 -1.08 16 24 H 0.13 2.63 7.67 -2.39 -0.02 2.61 16 25 C 0.00 0.05 6.80 24.83 0.17 0.22 16 26 C -0.22 -3.88 10.81 22.19 0.24 -3.64 16 27 C -0.23 -3.11 10.91 22.19 0.24 -2.86 16 28 C -0.03 -0.37 12.09 66.97 0.81 0.44 16 29 O -0.18 -2.75 10.36 -2.49 -0.03 -2.78 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.53 6.64 -2.39 -0.02 0.51 16 32 H 0.09 0.67 7.89 -2.39 -0.02 0.65 16 33 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 34 H 0.11 2.05 7.89 -2.38 -0.02 2.03 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.34 12.38 8.43 -89.69 -0.76 11.62 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 41 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.13 1.09 7.96 -2.38 -0.02 1.07 16 44 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 45 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.24 0.43 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -77.27 396.87 1.57 -75.69 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.47 Total: 41.11 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 7.09 Total: 15.13 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.95 Total: -121.06 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.12 Total: -56.36 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -77.27 1.57 -75.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481282974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.938 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds