Wall clock time and date at job start Tue Mar 31 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36018 * 116.99640 * 2 1 4 4 C 1.35854 * 120.31145 * 0.02562 * 3 2 1 5 5 N 1.35441 * 120.77137 * 179.72166 * 4 3 2 6 6 H 0.97001 * 119.29429 * 180.27553 * 5 4 3 7 7 C 1.36427 * 121.41121 * 0.52505 * 5 4 3 8 8 C 1.48081 * 119.71722 * 179.75208 * 7 5 4 9 9 O 1.21512 * 119.99836 * 187.07020 * 8 7 5 10 10 N 1.34775 * 119.99839 * 7.06846 * 8 7 5 11 11 C 1.47015 * 125.65094 * 355.31212 * 10 8 7 12 12 C 1.54324 * 107.27270 * 178.90191 * 11 10 8 13 13 C 1.55159 * 102.94156 * 337.80695 * 12 11 10 14 14 H 1.09003 * 111.03383 * 277.41025 * 13 12 11 15 15 C 1.52998 * 111.00624 * 153.57584 * 13 12 11 16 16 N 1.46500 * 109.47355 * 181.35055 * 15 13 12 17 17 C 1.46492 * 119.99908 * 89.99799 * 16 15 13 18 18 C 1.36936 * 119.99443 * 270.00210 * 16 15 13 19 19 H 1.08000 * 120.00436 * 334.84917 * 18 16 15 20 20 C 1.38820 * 119.99859 * 154.85354 * 18 16 15 21 21 N 1.31621 * 119.99731 * 4.55901 * 20 18 16 22 22 Si 1.86795 * 120.00136 * 184.55992 * 20 18 16 23 23 H 1.48500 * 109.47028 * 59.99743 * 22 20 18 24 24 H 1.48501 * 109.47051 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46918 * 299.99928 * 22 20 18 26 26 C 1.47421 * 125.64393 * 175.26595 * 10 8 7 27 27 C 1.36178 * 120.56280 * 359.48093 * 7 5 4 28 28 C 1.41574 * 120.31293 * 180.02562 * 3 2 1 29 29 O 1.22267 * 120.65870 * 0.03475 * 28 3 2 30 30 H 1.08999 * 109.47471 * 299.99204 * 1 2 3 31 31 H 1.08991 * 109.47727 * 60.00245 * 1 2 3 32 32 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 33 33 H 1.07991 * 119.61204 * 359.97438 * 4 3 2 34 34 H 1.09007 * 109.88314 * 298.31759 * 11 10 8 35 35 H 1.08997 * 109.88615 * 59.32872 * 11 10 8 36 36 H 1.08998 * 110.72179 * 219.43917 * 12 11 10 37 37 H 1.09007 * 110.72072 * 96.16582 * 12 11 10 38 38 H 1.09006 * 109.46996 * 61.34623 * 15 13 12 39 39 H 1.09002 * 109.46885 * 301.35091 * 15 13 12 40 40 H 1.09004 * 109.47420 * 264.78763 * 17 16 15 41 41 H 1.08998 * 109.46717 * 144.79329 * 17 16 15 42 42 H 1.08991 * 109.47649 * 24.79142 * 17 16 15 43 43 H 0.97002 * 120.00072 * 180.02562 * 21 20 18 44 44 H 1.08995 * 110.37052 * 85.32590 * 26 10 8 45 45 H 1.09001 * 110.46623 * 323.05154 * 26 10 8 46 46 H 1.07995 * 120.40485 * 180.27831 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3126 2.3553 0.0005 5 7 1.9177 3.5670 0.0062 6 1 1.3729 4.3696 0.0105 7 6 3.2770 3.6830 0.0009 8 6 3.8991 5.0268 0.0018 9 8 5.1015 5.1397 -0.1324 10 7 3.1316 6.1245 0.1515 11 6 1.6634 6.1400 0.2253 12 6 1.2301 7.6077 0.4246 13 6 2.5024 8.2680 1.0185 14 1 2.5658 8.0984 2.0934 15 6 2.5441 9.7637 0.6990 16 7 3.7719 10.3459 1.2463 17 6 4.9890 10.3877 0.4321 18 6 3.7818 10.8510 2.5191 19 1 2.8637 11.1982 2.9695 20 6 4.9721 10.9168 3.2305 21 7 6.1045 10.5782 2.6513 22 14 4.9667 11.4859 5.0096 23 1 4.1156 10.5761 5.8177 24 1 6.3537 11.4665 5.5398 25 1 4.4263 12.8670 5.0859 26 6 3.6255 7.5085 0.2692 27 6 4.0666 2.5735 0.0002 28 6 3.4597 1.2939 -0.0005 29 8 4.1430 0.2799 -0.0017 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2342 2.2973 0.0005 34 1 1.2415 5.7516 -0.7018 35 1 1.3281 5.5344 1.0672 36 1 0.3986 7.6723 1.1264 37 1 0.9676 8.0653 -0.5293 38 1 1.6790 10.2547 1.1447 39 1 2.5253 9.9049 -0.3817 40 1 5.6102 9.5221 0.6623 41 1 5.5422 11.3007 0.6523 42 1 4.7204 10.3716 -0.6241 43 1 6.9362 10.6238 3.1484 44 1 3.7819 7.9410 -0.7190 45 1 4.5508 7.5353 0.8449 46 1 5.1424 2.6683 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481492589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:17 Heat of formation + Delta-G solvation = -35.322150 kcal Electronic energy + Delta-G solvation = -29233.324033 eV Core-core repulsion = 25125.338616 eV Total energy + Delta-G solvation = -4107.985417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.76841 -41.14898 -39.31587 -38.98892 -38.84319 -37.18692 -34.11910 -32.85958 -32.54303 -31.76020 -30.15613 -28.53452 -28.14148 -27.38979 -25.88951 -24.25062 -23.88873 -22.99077 -21.96974 -21.20622 -19.80576 -19.23866 -18.67862 -18.44013 -17.54808 -17.28609 -17.24776 -17.00771 -16.72207 -16.29203 -15.84715 -15.57097 -15.42203 -15.29411 -15.07652 -14.96345 -14.56387 -14.43949 -14.28949 -14.00717 -13.87575 -13.82069 -13.18355 -13.11253 -12.79099 -12.58900 -12.45366 -12.34968 -12.26545 -12.12844 -12.02063 -11.78463 -11.64250 -11.60154 -11.39433 -10.77984 -10.61184 -10.57504 -9.93556 -8.81404 -8.73089 -7.81199 -5.28379 -0.59370 0.09573 1.29622 1.46645 1.47977 1.49517 1.54589 1.70303 2.28383 2.50059 2.51589 2.93305 3.33403 3.46945 3.49909 3.56471 3.67674 3.80113 3.90017 4.00098 4.16330 4.19601 4.33020 4.40238 4.49486 4.52220 4.55934 4.68540 4.80479 4.83015 4.83887 4.87823 4.96005 4.98260 5.05802 5.17217 5.31114 5.39116 5.45329 5.52495 5.67503 5.72601 5.84172 6.12998 6.25969 6.38080 6.62809 6.86611 7.19964 7.92873 8.36061 9.22054 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.002573 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.077069 B =10879.299330 C =11226.218280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.323 6.323 3 C -0.058 4.058 4 C 0.071 3.929 5 N -0.543 5.543 6 H 0.441 0.559 7 C 0.151 3.849 8 C 0.562 3.438 9 O -0.553 6.553 10 N -0.607 5.607 11 C 0.060 3.940 12 C -0.107 4.107 13 C -0.112 4.112 14 H 0.059 0.941 15 C 0.159 3.841 16 N -0.622 5.622 17 C 0.182 3.818 18 C -0.254 4.254 19 H 0.079 0.921 20 C -0.055 4.055 21 N -0.941 5.941 22 Si 0.962 3.038 23 H -0.276 1.276 24 H -0.304 1.304 25 H -0.274 1.274 26 C 0.126 3.874 27 C -0.236 4.236 28 C 0.379 3.621 29 O -0.569 6.569 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.064 0.936 40 H -0.006 1.006 41 H 0.020 0.980 42 H 0.022 0.978 43 H 0.243 0.757 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.941 -12.124 -8.004 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.237 6.237 3 C -0.108 4.108 4 C -0.058 4.058 5 N -0.167 5.167 6 H 0.295 0.705 7 C 0.036 3.964 8 C 0.349 3.651 9 O -0.430 6.430 10 N -0.340 5.340 11 C -0.061 4.061 12 C -0.145 4.145 13 C -0.134 4.134 14 H 0.077 0.923 15 C 0.033 3.967 16 N -0.345 5.345 17 C 0.037 3.963 18 C -0.385 4.385 19 H 0.096 0.904 20 C -0.249 4.249 21 N -0.588 5.588 22 Si 0.791 3.209 23 H -0.202 1.202 24 H -0.231 1.231 25 H -0.200 1.200 26 C 0.004 3.996 27 C -0.264 4.264 28 C 0.275 3.725 29 O -0.459 6.459 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.249 0.751 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.012 0.988 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.733 -12.774 -8.035 27.286 hybrid contribution 1.146 0.628 1.215 1.784 sum -21.587 -12.147 -6.820 25.691 Atomic orbital electron populations 1.23544 0.76078 1.06151 1.03227 1.86242 1.23558 1.24431 1.89435 1.20098 0.93356 0.86522 1.10824 1.22425 1.00865 0.82271 1.00222 1.42270 1.03960 1.10860 1.59599 0.70498 1.19832 0.84615 0.93231 0.98770 1.17879 0.86003 0.83137 0.78071 1.90875 1.15685 1.85896 1.50540 1.48686 1.09129 1.06419 1.69751 1.22853 0.77815 1.01613 1.03796 1.22711 0.96952 0.90869 1.03983 1.22989 0.93880 0.97584 0.98993 0.92286 1.21021 0.88573 0.89712 0.97404 1.44180 1.08444 1.68835 1.13042 1.20565 0.87750 0.98498 0.89500 1.19515 0.94428 1.33674 0.90833 0.90356 1.25896 0.96083 1.01518 1.01431 1.70278 0.97758 1.54531 1.36234 0.85419 0.75891 0.78417 0.81204 1.20168 1.23082 1.20010 1.22204 0.98082 0.79234 1.00061 1.22271 1.01831 0.91216 1.11067 1.17231 0.88257 0.89046 0.77961 1.90808 1.67325 1.39023 1.48756 0.90299 0.90112 0.87093 0.75065 0.86354 0.88031 0.86543 0.87661 0.91576 0.91823 0.98782 0.96165 0.95985 0.94746 0.91118 0.94831 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.14 16 2 O -0.32 -6.83 10.33 -78.63 -0.81 -7.65 16 3 C -0.06 -1.23 6.71 22.54 0.15 -1.08 16 4 C 0.07 0.67 10.22 83.58 0.85 1.52 16 5 N -0.54 -5.99 4.96 -184.21 -0.91 -6.90 16 6 H 0.44 1.74 3.14 -92.85 -0.29 1.45 16 7 C 0.15 3.42 6.72 40.56 0.27 3.69 16 8 C 0.56 16.33 7.82 86.86 0.68 17.01 16 9 O -0.55 -22.21 16.59 -3.75 -0.06 -22.27 16 10 N -0.61 -14.35 3.33 -815.34 -2.71 -17.06 16 11 C 0.06 0.59 5.03 86.73 0.44 1.03 16 12 C -0.11 -1.22 6.42 31.78 0.20 -1.02 16 13 C -0.11 -2.97 3.29 -9.40 -0.03 -3.01 16 14 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.16 4.99 5.22 86.38 0.45 5.44 16 16 N -0.62 -28.28 2.85 -726.95 -2.07 -30.36 16 17 C 0.18 8.77 8.15 127.77 1.04 9.81 16 18 C -0.25 -12.98 9.67 84.04 0.81 -12.16 16 19 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 20 C -0.05 -2.99 5.39 84.86 0.46 -2.54 16 21 N -0.94 -55.67 10.10 21.65 0.22 -55.45 16 22 Si 0.96 44.10 29.56 68.60 2.03 46.13 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.13 3.94 5.35 86.86 0.46 4.41 16 27 C -0.24 -7.01 9.53 22.63 0.22 -6.79 16 28 C 0.38 12.06 6.78 23.93 0.16 12.22 16 29 O -0.57 -23.74 17.71 8.93 0.16 -23.58 16 30 H 0.08 0.13 7.66 -2.39 -0.02 0.11 16 31 H 0.08 0.10 7.66 -2.39 -0.02 0.08 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.23 -0.64 6.21 -2.92 -0.02 -0.66 16 34 H 0.12 0.20 7.03 -2.38 -0.02 0.19 16 35 H 0.10 0.52 6.96 -2.39 -0.02 0.50 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.82 8.04 -2.38 -0.02 0.80 16 38 H 0.07 1.90 8.04 -2.38 -0.02 1.88 16 39 H 0.06 1.72 7.82 -2.39 -0.02 1.70 16 40 H -0.01 -0.34 6.90 -2.39 -0.02 -0.35 16 41 H 0.02 1.08 6.98 -2.39 -0.02 1.06 16 42 H 0.02 0.89 7.83 -2.39 -0.02 0.87 16 43 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 45 H 0.03 1.45 7.58 -2.39 -0.02 1.43 16 46 H 0.14 4.85 7.59 -2.91 -0.02 4.83 16 Total: -1.00 -91.34 370.85 3.84 -87.50 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: 0.72 Total: -0.04 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 7.28 Total: 29.67 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -5.48 Total: -109.77 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.72 Total: -53.50 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -91.34 3.84 -87.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481492589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.179 kcal (2) G-P(sol) polarization free energy of solvation -91.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds