Wall clock time and date at job start Tue Mar 31 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36014 * 117.00475 * 2 1 4 4 C 1.35857 * 120.31015 * 359.97438 * 3 2 1 5 5 N 1.35439 * 120.77719 * 179.97438 * 4 3 2 6 6 H 0.97001 * 119.29539 * 180.02562 * 5 4 3 7 7 C 1.36432 * 121.40768 * 0.02562 * 5 4 3 8 8 C 1.48072 * 119.71671 * 179.97438 * 7 5 4 9 9 O 1.21511 * 119.99924 * 172.43062 * 8 7 5 10 10 N 1.34774 * 120.00149 * 352.42439 * 8 7 5 11 11 C 1.47019 * 125.64774 * 5.04325 * 10 8 7 12 12 C 1.54320 * 107.27442 * 181.02237 * 11 10 8 13 13 C 1.55167 * 102.94133 * 22.19356 * 12 11 10 14 14 H 1.09000 * 111.03035 * 82.58597 * 13 12 11 15 15 C 1.52998 * 111.00354 * 206.42204 * 13 12 11 16 16 N 1.46506 * 109.46734 * 178.64839 * 15 13 12 17 17 C 1.46499 * 119.99919 * 90.00445 * 16 15 13 18 18 C 1.36935 * 119.99862 * 270.00196 * 16 15 13 19 19 H 1.07999 * 120.00336 * 33.80629 * 18 16 15 20 20 C 1.38815 * 120.00048 * 213.80492 * 18 16 15 21 21 N 1.31624 * 119.99476 * 5.54653 * 20 18 16 22 22 Si 1.86791 * 120.00337 * 185.54862 * 20 18 16 23 23 H 1.48501 * 109.47330 * 59.99528 * 22 20 18 24 24 H 1.48494 * 109.47427 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47209 * 299.99907 * 22 20 18 26 26 C 1.47422 * 125.64954 * 185.00293 * 10 8 7 27 27 C 1.36175 * 120.56091 * 0.25100 * 7 5 4 28 28 C 1.41571 * 120.31814 * 179.97438 * 3 2 1 29 29 O 1.22263 * 120.65425 * 0.02562 * 28 3 2 30 30 H 1.09004 * 109.46845 * 59.99869 * 1 2 3 31 31 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46725 * 300.00711 * 1 2 3 33 33 H 1.07998 * 119.61238 * 359.96252 * 4 3 2 34 34 H 1.08998 * 109.88574 * 300.43931 * 11 10 8 35 35 H 1.09006 * 109.88294 * 61.60447 * 11 10 8 36 36 H 1.09000 * 110.72393 * 263.83571 * 12 11 10 37 37 H 1.09006 * 110.72577 * 140.55592 * 12 11 10 38 38 H 1.08996 * 109.46984 * 58.65262 * 15 13 12 39 39 H 1.08993 * 109.47787 * 298.64767 * 15 13 12 40 40 H 1.09000 * 109.46850 * 85.07641 * 17 16 15 41 41 H 1.09001 * 109.46679 * 325.07424 * 17 16 15 42 42 H 1.08994 * 109.46845 * 205.07937 * 17 16 15 43 43 H 0.96998 * 119.99583 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36639 * 37.06581 * 26 10 8 45 45 H 1.08999 * 110.36915 * 274.74570 * 26 10 8 46 46 H 1.08007 * 120.40403 * 179.72389 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5670 0.0000 6 1 1.3733 4.3696 0.0000 7 6 3.2774 3.6828 0.0005 8 6 3.8996 5.0265 0.0005 9 8 5.1014 5.1395 0.1396 10 7 3.1330 6.1241 -0.1539 11 6 1.6647 6.1404 -0.2267 12 6 1.2322 7.6076 -0.4309 13 6 2.5046 8.2650 -1.0281 14 1 2.5670 8.0914 -2.1024 15 6 2.5475 9.7617 -0.7139 16 7 3.7755 10.3412 -1.2642 17 6 3.7855 10.8767 -2.6278 18 6 4.9137 10.3821 -0.5041 19 1 5.1221 9.5896 0.1994 20 6 5.7998 11.4423 -0.6377 21 7 5.4946 12.4612 -1.4130 22 14 7.4251 11.4229 0.2828 23 1 8.2170 10.2385 -0.1359 24 1 8.1846 12.6605 -0.0277 25 1 7.1660 11.3538 1.7434 26 6 3.6277 7.5074 -0.2770 27 6 4.0669 2.5732 -0.0046 28 6 3.4599 1.2937 0.0005 29 8 4.1430 0.2797 0.0006 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 0.2345 2.2974 -0.0016 34 1 1.3284 5.5344 -1.0679 35 1 1.2432 5.7555 0.7020 36 1 0.9708 8.0688 0.5215 37 1 0.4002 7.6705 -1.1324 38 1 2.5297 9.9069 0.3662 39 1 1.6826 10.2519 -1.1607 40 1 3.4302 11.9071 -2.6160 41 1 3.1327 10.2744 -3.2595 42 1 4.8012 10.8471 -3.0222 43 1 6.1139 13.2018 -1.5067 44 1 4.5521 7.5297 -0.8542 45 1 3.7851 7.9432 0.7096 46 1 5.1428 2.6679 -0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481492590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:22 Heat of formation + Delta-G solvation = -14.938145 kcal Electronic energy + Delta-G solvation = -29139.682870 eV Core-core repulsion = 25032.581369 eV Total energy + Delta-G solvation = -4107.101501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82628 -40.16785 -38.45017 -37.89268 -37.80175 -35.50954 -32.67810 -31.83633 -31.12874 -30.74725 -29.18965 -27.98000 -26.33350 -25.89943 -24.73251 -23.39720 -22.94619 -21.63179 -20.90491 -19.84560 -19.00234 -18.33213 -17.51629 -16.96811 -16.49290 -16.42261 -16.14298 -16.03016 -15.31252 -15.04563 -14.77173 -14.73971 -14.34629 -14.15255 -13.91341 -13.58715 -13.39714 -13.27015 -13.14495 -12.99135 -12.69976 -12.53487 -12.13687 -11.81437 -11.76610 -11.50833 -11.33457 -10.88223 -10.81425 -10.65500 -10.50089 -10.45836 -10.29293 -9.99236 -9.90900 -9.71609 -9.69525 -8.88078 -8.55817 -7.93139 -6.67671 -5.82492 -3.38424 0.45935 0.90091 2.27672 2.56573 2.65800 2.91878 3.36922 3.41780 3.44855 3.48587 3.82848 4.08677 4.23108 4.34586 4.42160 4.50901 4.59629 4.68466 4.72021 4.76387 4.90042 5.07411 5.16976 5.23392 5.36160 5.46220 5.51956 5.66585 5.74731 5.82185 5.85890 5.91011 6.12931 6.25491 6.27953 6.37027 6.40855 6.49314 6.68829 6.77071 6.87834 7.17473 7.25891 7.60473 7.73333 7.76808 7.81400 8.39975 9.17583 9.77153 10.31311 11.23427 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002611 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.133700 B =10720.525209 C =11803.346043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.034 4.034 4 C 0.023 3.977 5 N -0.575 5.575 6 H 0.424 0.576 7 C 0.130 3.870 8 C 0.567 3.433 9 O -0.496 6.496 10 N -0.614 5.614 11 C 0.075 3.925 12 C -0.124 4.124 13 C -0.117 4.117 14 H 0.078 0.922 15 C 0.161 3.839 16 N -0.598 5.598 17 C 0.161 3.839 18 C -0.266 4.266 19 H 0.066 0.934 20 C 0.014 3.986 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.123 3.877 27 C -0.215 4.215 28 C 0.401 3.599 29 O -0.498 6.498 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.169 0.831 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.020 0.980 41 H -0.007 1.007 42 H 0.049 0.951 43 H 0.255 0.745 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.818 -15.870 1.797 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.200 6.200 3 C -0.085 4.085 4 C -0.104 4.104 5 N -0.200 5.200 6 H 0.273 0.727 7 C 0.017 3.983 8 C 0.352 3.648 9 O -0.369 6.369 10 N -0.349 5.349 11 C -0.048 4.048 12 C -0.163 4.163 13 C -0.140 4.140 14 H 0.097 0.903 15 C 0.033 3.967 16 N -0.320 5.320 17 C 0.016 3.984 18 C -0.396 4.396 19 H 0.083 0.917 20 C -0.186 4.186 21 N -0.545 5.545 22 Si 0.730 3.270 23 H -0.207 1.207 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.003 3.997 27 C -0.242 4.242 28 C 0.290 3.710 29 O -0.382 6.382 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.186 0.814 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.011 0.989 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.557 -16.413 1.825 23.385 hybrid contribution 0.132 0.555 0.426 0.711 sum -16.425 -15.858 2.250 22.942 Atomic orbital electron populations 1.23133 0.79206 1.04511 1.00895 1.86279 1.20294 1.24374 1.89060 1.20450 0.94839 0.84665 1.08562 1.21688 0.98776 0.84519 1.05395 1.42132 1.05604 1.09409 1.62825 0.72686 1.20424 0.83054 0.95599 0.99189 1.17557 0.86477 0.82050 0.78715 1.90899 1.13101 1.85053 1.47893 1.48747 1.06695 1.08318 1.71131 1.22338 0.81518 1.00830 1.00160 1.22689 0.99225 0.91645 1.02720 1.23259 0.91461 0.99559 0.99695 0.90324 1.20664 0.89977 0.88356 0.97744 1.43769 1.06474 1.70257 1.11472 1.20755 0.98921 0.94946 0.83771 1.19063 0.98020 1.03050 1.19440 0.91682 1.25291 0.99682 0.95020 0.98635 1.69991 1.35989 1.08298 1.40223 0.86414 0.83634 0.77068 0.79918 1.20668 1.21584 1.20720 1.22531 0.99014 0.76659 1.01545 1.22486 1.02371 0.90326 1.09017 1.16779 0.86106 0.89775 0.78290 1.90857 1.65722 1.37500 1.44106 0.92747 0.87892 0.92772 0.81424 0.90910 0.90989 0.89802 0.89733 0.93000 0.93943 0.96146 0.98858 0.93216 0.93531 0.89036 0.90445 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.22 10.33 -35.61 -0.37 -3.59 16 3 C -0.03 -0.38 6.71 -39.17 -0.26 -0.65 16 4 C 0.02 0.17 10.22 -16.81 -0.17 0.00 16 5 N -0.58 -4.44 4.96 -9.58 -0.05 -4.49 16 6 H 0.42 2.23 3.16 -40.93 -0.13 2.10 16 7 C 0.13 1.50 6.72 -82.53 -0.55 0.95 16 8 C 0.57 7.98 7.81 -12.23 -0.10 7.88 16 9 O -0.50 -9.06 16.60 5.36 0.09 -8.97 16 10 N -0.61 -7.58 3.33 -171.64 -0.57 -8.15 16 11 C 0.08 0.56 5.02 -3.07 -0.02 0.55 16 12 C -0.12 -1.04 6.42 -24.89 -0.16 -1.20 16 13 C -0.12 -1.59 3.29 -88.47 -0.29 -1.88 16 14 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.16 2.77 5.23 -4.04 -0.02 2.75 16 16 N -0.60 -13.62 2.83 -181.12 -0.51 -14.13 16 17 C 0.16 3.68 9.01 59.85 0.54 4.22 16 18 C -0.27 -6.80 8.98 -15.06 -0.14 -6.93 16 19 H 0.07 1.63 6.48 -52.49 -0.34 1.29 16 20 C 0.01 0.37 5.17 -17.43 -0.09 0.28 16 21 N -0.90 -25.43 11.09 55.49 0.62 -24.81 16 22 Si 0.90 21.46 29.56 -169.99 -5.02 16.44 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.12 1.88 4.90 -2.53 -0.01 1.87 16 27 C -0.21 -2.91 9.53 -39.03 -0.37 -3.28 16 28 C 0.40 5.92 6.78 -37.02 -0.25 5.67 16 29 O -0.50 -9.30 17.71 -11.15 -0.20 -9.49 16 30 H 0.05 0.19 7.66 -51.93 -0.40 -0.21 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.19 7.66 -51.93 -0.40 -0.21 16 33 H 0.17 0.49 6.21 -52.49 -0.33 0.16 16 34 H 0.07 0.40 6.98 -51.93 -0.36 0.04 16 35 H 0.07 0.36 7.03 -51.93 -0.36 0.00 16 36 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 39 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 41 H -0.01 -0.14 8.11 -51.93 -0.42 -0.56 16 42 H 0.05 1.25 7.23 -51.93 -0.38 0.88 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 45 H 0.08 1.28 7.50 -51.93 -0.39 0.89 16 46 H 0.17 2.40 7.60 -52.48 -0.40 2.01 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -35.48 371.59 -7.70 -43.17 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.38 Total: -2.87 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -0.90 Total: 11.30 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.52 Total: -51.58 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.48 Total: -22.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.48 -7.70 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481492590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.236 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds