Wall clock time and date at job start Tue Mar 31 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36014 * 117.00475 * 2 1 4 4 C 1.35857 * 120.31015 * 359.97438 * 3 2 1 5 5 N 1.35439 * 120.77719 * 179.97438 * 4 3 2 6 6 H 0.97001 * 119.29539 * 180.02562 * 5 4 3 7 7 C 1.36432 * 121.40768 * 0.02562 * 5 4 3 8 8 C 1.48072 * 119.71671 * 179.97438 * 7 5 4 9 9 O 1.21511 * 119.99924 * 172.43062 * 8 7 5 10 10 N 1.34774 * 120.00149 * 352.42439 * 8 7 5 11 11 C 1.47019 * 125.64774 * 5.04325 * 10 8 7 12 12 C 1.54320 * 107.27442 * 181.02237 * 11 10 8 13 13 C 1.55167 * 102.94133 * 22.19356 * 12 11 10 14 14 H 1.09000 * 111.03035 * 82.58597 * 13 12 11 15 15 C 1.52998 * 111.00354 * 206.42204 * 13 12 11 16 16 N 1.46506 * 109.46734 * 178.64839 * 15 13 12 17 17 C 1.46499 * 119.99919 * 90.00445 * 16 15 13 18 18 C 1.36935 * 119.99862 * 270.00196 * 16 15 13 19 19 H 1.07999 * 120.00336 * 33.80629 * 18 16 15 20 20 C 1.38815 * 120.00048 * 213.80492 * 18 16 15 21 21 N 1.31624 * 119.99476 * 5.54653 * 20 18 16 22 22 Si 1.86791 * 120.00337 * 185.54862 * 20 18 16 23 23 H 1.48501 * 109.47330 * 59.99528 * 22 20 18 24 24 H 1.48494 * 109.47427 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47209 * 299.99907 * 22 20 18 26 26 C 1.47422 * 125.64954 * 185.00293 * 10 8 7 27 27 C 1.36175 * 120.56091 * 0.25100 * 7 5 4 28 28 C 1.41571 * 120.31814 * 179.97438 * 3 2 1 29 29 O 1.22263 * 120.65425 * 0.02562 * 28 3 2 30 30 H 1.09004 * 109.46845 * 59.99869 * 1 2 3 31 31 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46725 * 300.00711 * 1 2 3 33 33 H 1.07998 * 119.61238 * 359.96252 * 4 3 2 34 34 H 1.08998 * 109.88574 * 300.43931 * 11 10 8 35 35 H 1.09006 * 109.88294 * 61.60447 * 11 10 8 36 36 H 1.09000 * 110.72393 * 263.83571 * 12 11 10 37 37 H 1.09006 * 110.72577 * 140.55592 * 12 11 10 38 38 H 1.08996 * 109.46984 * 58.65262 * 15 13 12 39 39 H 1.08993 * 109.47787 * 298.64767 * 15 13 12 40 40 H 1.09000 * 109.46850 * 85.07641 * 17 16 15 41 41 H 1.09001 * 109.46679 * 325.07424 * 17 16 15 42 42 H 1.08994 * 109.46845 * 205.07937 * 17 16 15 43 43 H 0.96998 * 119.99583 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36639 * 37.06581 * 26 10 8 45 45 H 1.08999 * 110.36915 * 274.74570 * 26 10 8 46 46 H 1.08007 * 120.40403 * 179.72389 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5670 0.0000 6 1 1.3733 4.3696 0.0000 7 6 3.2774 3.6828 0.0005 8 6 3.8996 5.0265 0.0005 9 8 5.1014 5.1395 0.1396 10 7 3.1330 6.1241 -0.1539 11 6 1.6647 6.1404 -0.2267 12 6 1.2322 7.6076 -0.4309 13 6 2.5046 8.2650 -1.0281 14 1 2.5670 8.0914 -2.1024 15 6 2.5475 9.7617 -0.7139 16 7 3.7755 10.3412 -1.2642 17 6 3.7855 10.8767 -2.6278 18 6 4.9137 10.3821 -0.5041 19 1 5.1221 9.5896 0.1994 20 6 5.7998 11.4423 -0.6377 21 7 5.4946 12.4612 -1.4130 22 14 7.4251 11.4229 0.2828 23 1 8.2170 10.2385 -0.1359 24 1 8.1846 12.6605 -0.0277 25 1 7.1660 11.3538 1.7434 26 6 3.6277 7.5074 -0.2770 27 6 4.0669 2.5732 -0.0046 28 6 3.4599 1.2937 0.0005 29 8 4.1430 0.2797 0.0006 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 0.2345 2.2974 -0.0016 34 1 1.3284 5.5344 -1.0679 35 1 1.2432 5.7555 0.7020 36 1 0.9708 8.0688 0.5215 37 1 0.4002 7.6705 -1.1324 38 1 2.5297 9.9069 0.3662 39 1 1.6826 10.2519 -1.1607 40 1 3.4302 11.9071 -2.6160 41 1 3.1327 10.2744 -3.2595 42 1 4.8012 10.8471 -3.0222 43 1 6.1139 13.2018 -1.5067 44 1 4.5521 7.5297 -0.8542 45 1 3.7851 7.9432 0.7096 46 1 5.1428 2.6679 -0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481492590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:21 Heat of formation + Delta-G solvation = -40.388765 kcal Electronic energy + Delta-G solvation = -29140.786491 eV Core-core repulsion = 25032.581369 eV Total energy + Delta-G solvation = -4108.205122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.75533 -41.13739 -39.30803 -38.97540 -38.83515 -37.14242 -34.11143 -32.84908 -32.57872 -31.73928 -30.23997 -28.49806 -27.83325 -27.59175 -25.89882 -24.24692 -23.95140 -22.99698 -22.00312 -21.07752 -19.78920 -19.24549 -18.77570 -18.40076 -17.46255 -17.29046 -17.17887 -16.97480 -16.78083 -16.25711 -15.84342 -15.56609 -15.42016 -15.20129 -15.07228 -14.94660 -14.64557 -14.52604 -14.27960 -13.99182 -13.91750 -13.78956 -13.17307 -13.09302 -12.85405 -12.64528 -12.44512 -12.32996 -12.25966 -12.17353 -11.96558 -11.92102 -11.62233 -11.57881 -11.43073 -10.76829 -10.60169 -10.58589 -9.91601 -8.80518 -8.57478 -7.84884 -5.40516 -0.57956 0.10528 1.31318 1.43002 1.45842 1.50816 1.50994 1.71303 2.29283 2.48674 2.51166 2.94839 3.31322 3.47220 3.50294 3.55147 3.67984 3.80895 3.92913 4.02215 4.15545 4.21805 4.33931 4.41025 4.49893 4.52553 4.56515 4.71866 4.82452 4.84243 4.86027 4.93507 4.97093 4.98302 5.05757 5.16935 5.25060 5.37038 5.41080 5.54696 5.68313 5.71212 5.73818 6.14766 6.26840 6.41940 6.64605 6.87711 7.20189 7.90219 8.36917 9.18370 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002611 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.133700 B =10720.525209 C =11803.346043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.324 6.324 3 C -0.058 4.058 4 C 0.071 3.929 5 N -0.543 5.543 6 H 0.441 0.559 7 C 0.151 3.849 8 C 0.563 3.437 9 O -0.553 6.553 10 N -0.608 5.608 11 C 0.061 3.939 12 C -0.108 4.108 13 C -0.108 4.108 14 H 0.074 0.926 15 C 0.158 3.842 16 N -0.617 5.617 17 C 0.174 3.826 18 C -0.255 4.255 19 H 0.065 0.935 20 C -0.043 4.043 21 N -0.933 5.933 22 Si 0.951 3.049 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.125 3.875 27 C -0.236 4.236 28 C 0.379 3.621 29 O -0.569 6.569 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.048 0.952 39 H 0.063 0.937 40 H -0.002 1.002 41 H 0.031 0.969 42 H 0.014 0.986 43 H 0.248 0.752 44 H 0.044 0.956 45 H 0.062 0.938 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.410 -16.412 2.234 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.237 6.237 3 C -0.108 4.108 4 C -0.058 4.058 5 N -0.167 5.167 6 H 0.295 0.705 7 C 0.036 3.964 8 C 0.350 3.650 9 O -0.430 6.430 10 N -0.340 5.340 11 C -0.060 4.060 12 C -0.146 4.146 13 C -0.130 4.130 14 H 0.093 0.907 15 C 0.032 3.968 16 N -0.340 5.340 17 C 0.028 3.972 18 C -0.386 4.386 19 H 0.082 0.918 20 C -0.239 4.239 21 N -0.579 5.579 22 Si 0.780 3.220 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.200 1.200 26 C 0.004 3.996 27 C -0.264 4.264 28 C 0.275 3.725 29 O -0.460 6.460 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.249 0.751 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.016 0.984 41 H 0.049 0.951 42 H 0.033 0.967 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.274 -16.926 2.278 28.068 hybrid contribution 1.679 0.767 0.284 1.868 sum -20.595 -16.160 2.562 26.303 Atomic orbital electron populations 1.23545 0.76087 1.06130 1.03227 1.86240 1.23548 1.24488 1.89440 1.20108 0.93383 0.86510 1.10843 1.22419 1.00851 0.82289 1.00222 1.42261 1.03988 1.10820 1.59597 0.70498 1.19838 0.84571 0.93272 0.98721 1.17854 0.86000 0.83090 0.78077 1.90878 1.15747 1.85887 1.50454 1.48718 1.09092 1.06509 1.69717 1.22843 0.77875 1.01486 1.03817 1.22698 0.97132 0.90977 1.03841 1.22952 0.93890 0.96737 0.99453 0.90716 1.20886 0.88086 0.90349 0.97482 1.44024 1.07801 1.70710 1.11468 1.20506 0.97493 0.94524 0.84638 1.19312 0.98930 1.02080 1.18258 0.91763 1.25892 1.02445 0.95390 1.00151 1.70119 1.36684 1.08909 1.42147 0.85609 0.80823 0.76327 0.79284 1.21350 1.21942 1.19971 1.22241 0.98353 0.78860 1.00175 1.22264 1.01839 0.91176 1.11094 1.17241 0.88239 0.89088 0.77960 1.90809 1.67339 1.39052 1.48774 0.90193 0.87132 0.90215 0.75115 0.87435 0.86854 0.88584 0.86007 0.93312 0.91842 0.98405 0.95101 0.96672 0.94294 0.93756 0.92015 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.14 16 2 O -0.32 -6.61 10.33 -78.58 -0.81 -7.42 16 3 C -0.06 -1.19 6.71 22.54 0.15 -1.04 16 4 C 0.07 0.60 10.22 83.58 0.85 1.45 16 5 N -0.54 -5.32 4.96 -184.21 -0.91 -6.24 16 6 H 0.44 1.20 3.16 -92.81 -0.29 0.91 16 7 C 0.15 3.22 6.72 40.56 0.27 3.49 16 8 C 0.56 15.44 7.81 86.85 0.68 16.12 16 9 O -0.55 -21.29 16.60 -3.75 -0.06 -21.36 16 10 N -0.61 -13.38 3.33 -815.23 -2.71 -16.09 16 11 C 0.06 0.51 5.02 86.73 0.44 0.95 16 12 C -0.11 -1.12 6.42 31.79 0.20 -0.91 16 13 C -0.11 -2.59 3.29 -9.40 -0.03 -2.62 16 14 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 15 C 0.16 5.06 5.23 86.38 0.45 5.52 16 16 N -0.62 -27.97 2.83 -726.95 -2.06 -30.03 16 17 C 0.17 7.96 9.01 127.77 1.15 9.11 16 18 C -0.26 -13.25 8.98 84.03 0.75 -12.50 16 19 H 0.06 3.29 6.48 -2.91 -0.02 3.28 16 20 C -0.04 -2.35 5.17 84.86 0.44 -1.92 16 21 N -0.93 -54.18 11.09 21.65 0.24 -53.94 16 22 Si 0.95 45.44 29.56 68.60 2.03 47.46 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 26 C 0.13 3.76 4.90 86.86 0.43 4.18 16 27 C -0.24 -6.70 9.53 22.62 0.22 -6.49 16 28 C 0.38 11.67 6.78 23.93 0.16 11.83 16 29 O -0.57 -23.27 17.71 8.95 0.16 -23.11 16 30 H 0.08 0.06 7.66 -2.38 -0.02 0.04 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.06 7.66 -2.39 -0.02 0.04 16 33 H 0.23 -0.84 6.21 -2.91 -0.02 -0.86 16 34 H 0.11 0.28 6.98 -2.39 -0.02 0.26 16 35 H 0.11 0.16 7.03 -2.38 -0.02 0.15 16 36 H 0.10 0.86 8.04 -2.39 -0.02 0.85 16 37 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.05 1.59 8.00 -2.39 -0.02 1.57 16 39 H 0.06 1.80 8.07 -2.39 -0.02 1.78 16 40 H 0.00 -0.12 7.74 -2.39 -0.02 -0.14 16 41 H 0.03 1.16 8.11 -2.39 -0.02 1.14 16 42 H 0.01 0.76 7.23 -2.39 -0.02 0.74 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 45 H 0.06 2.03 7.50 -2.39 -0.02 2.01 16 46 H 0.14 4.67 7.60 -2.91 -0.02 4.65 16 Total: -1.00 -90.34 371.59 3.87 -86.47 By element: Atomic # 1 Polarization: -4.78 SS G_CDS: 0.72 Total: -4.06 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 7.28 Total: 28.31 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -5.44 Total: -106.29 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.72 Total: -51.89 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -90.34 3.87 -86.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481492590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.084 kcal (2) G-P(sol) polarization free energy of solvation -90.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds