Wall clock time and date at job start Tue Mar 31 2020 19:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35503 * 117.00071 * 2 1 4 4 C 1.39212 * 120.89940 * 359.97438 * 3 2 1 5 5 C 1.37910 * 119.39099 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.29023 * 0.02562 * 5 4 3 7 7 C 1.32190 * 121.97608 * 359.67913 * 6 5 4 8 8 O 1.35429 * 119.77559 * 180.28850 * 7 6 5 9 9 C 1.42899 * 116.99682 * 0.29539 * 8 7 6 10 10 C 1.40285 * 120.44608 * 0.58356 * 7 6 5 11 11 C 1.47230 * 120.65344 * 179.73218 * 10 7 6 12 12 O 1.21627 * 119.99607 * 269.71671 * 11 10 7 13 13 N 1.34773 * 120.00479 * 89.72063 * 11 10 7 14 14 C 1.46500 * 120.00509 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.46593 * 324.99907 * 14 13 11 16 16 C 1.52998 * 109.47003 * 204.99732 * 14 13 11 17 17 N 1.46500 * 109.47071 * 55.00255 * 16 14 13 18 18 C 1.36942 * 120.00244 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99523 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00458 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00011 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00317 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46697 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47275 * 120.00247 * 22 20 18 25 25 H 1.48503 * 109.47012 * 240.00587 * 22 20 18 26 26 C 1.52996 * 109.47073 * 84.99721 * 14 13 11 27 27 C 1.53002 * 117.49888 * 231.25527 * 26 14 13 28 28 C 1.53000 * 117.50107 * 299.91289 * 26 14 13 29 29 H 1.09000 * 109.46849 * 299.99415 * 1 2 3 30 30 H 1.08994 * 109.47329 * 59.99805 * 1 2 3 31 31 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.30528 * 0.04354 * 4 3 2 33 33 H 1.08004 * 119.34978 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47637 * 299.99161 * 9 8 7 35 35 H 1.08997 * 109.47639 * 59.99648 * 9 8 7 36 36 H 1.09004 * 109.47039 * 179.97438 * 9 8 7 37 37 H 0.97006 * 119.99568 * 0.02562 * 13 11 10 38 38 H 1.08997 * 109.47096 * 174.99683 * 16 14 13 39 39 H 1.08996 * 109.47337 * 294.99987 * 16 14 13 40 40 H 0.96999 * 120.00125 * 359.97438 * 17 16 14 41 41 H 0.97001 * 120.00226 * 179.97438 * 21 20 18 42 42 H 1.09002 * 115.54951 * 85.58501 * 26 14 13 43 43 H 1.09000 * 117.49996 * 215.00804 * 27 26 14 44 44 H 1.08999 * 117.49664 * 0.02562 * 27 26 14 45 45 H 1.09008 * 117.49673 * 359.97438 * 28 26 14 46 46 H 1.08999 * 117.49942 * 144.97366 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9626 3.5985 -0.0011 6 7 3.2819 3.6626 -0.0016 7 6 4.0355 2.5766 0.0047 8 8 5.3847 2.6942 0.0098 9 6 5.9203 4.0190 0.0146 10 6 3.4472 1.3030 -0.0002 11 6 4.2822 0.0904 0.0008 12 8 4.6270 -0.4113 -1.0521 13 7 4.6644 -0.4637 1.1684 14 6 5.4958 -1.6700 1.1694 15 1 5.2167 -2.3041 0.3280 16 6 5.2830 -2.4349 2.4773 17 7 3.8550 -2.7094 2.6556 18 6 3.4213 -3.3876 3.7635 19 1 4.1320 -3.7204 4.5055 20 6 2.0683 -3.6473 3.9328 21 7 1.2022 -3.2422 3.0283 22 14 1.4768 -4.5730 5.4436 23 1 2.6400 -4.9169 6.3003 24 1 0.5328 -3.7196 6.2089 25 1 0.7874 -5.8190 5.0223 26 6 6.9684 -1.2745 1.0436 27 6 7.7948 -1.9645 -0.0436 28 6 7.3871 -0.4981 -0.2064 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2249 2.3528 -0.0002 33 1 1.3881 4.5130 -0.0010 34 1 5.5835 4.5504 -0.8755 35 1 5.5769 4.5466 0.9044 36 1 7.0092 3.9706 0.0189 37 1 4.3890 -0.0637 2.0082 38 1 5.8321 -3.3757 2.4414 39 1 5.6447 -1.8347 3.3122 40 1 3.2167 -2.4102 1.9894 41 1 0.2568 -3.4239 3.1464 42 1 7.4713 -1.0308 1.9795 43 1 8.8413 -2.1747 0.1770 44 1 7.2891 -2.6998 -0.6695 45 1 6.6135 -0.2693 -0.9395 46 1 8.1652 0.2568 -0.0929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483572538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:41 Heat of formation + Delta-G solvation = -25.506027 kcal Electronic energy + Delta-G solvation = -30275.197422 eV Core-core repulsion = 26167.637663 eV Total energy + Delta-G solvation = -4107.559758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07339 -39.28285 -39.12420 -37.29067 -36.91312 -34.89542 -33.27119 -31.96980 -30.96488 -30.68748 -27.95567 -27.94230 -26.81969 -24.63475 -23.80654 -22.50401 -22.01627 -21.42867 -20.82227 -19.86795 -18.93505 -17.77066 -17.46433 -16.91952 -16.51291 -16.32722 -15.88055 -15.56971 -15.16538 -14.99191 -14.88863 -14.49118 -14.26376 -13.92233 -13.61750 -13.32881 -13.22605 -13.09351 -12.78458 -12.65885 -12.04402 -11.93632 -11.64654 -11.56612 -11.41632 -11.21306 -11.05835 -10.95963 -10.85786 -10.79806 -10.20688 -10.11957 -9.95429 -9.84736 -9.63113 -9.33357 -8.89760 -8.88700 -8.66209 -8.45924 -6.91420 -5.75061 -3.04052 0.90307 1.26935 2.65008 2.97764 3.41753 3.43684 3.48488 3.49682 3.50153 3.67811 4.19735 4.32133 4.57999 4.61046 4.90124 4.96569 5.02215 5.14532 5.15664 5.21252 5.27618 5.30372 5.35752 5.43511 5.46828 5.56084 5.60286 5.64659 5.72984 5.85772 5.90628 5.96649 6.01621 6.03888 6.21432 6.33467 6.47803 6.58438 6.68042 6.77345 7.06681 7.08529 7.20069 7.71052 7.71630 8.00914 8.42476 8.67671 9.54703 10.11900 10.48295 11.46835 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009507 B = 0.004707 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.623837 B = 5947.025565 C = 7975.323208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.241 3.759 4 C -0.301 4.301 5 C 0.185 3.815 6 N -0.566 5.566 7 C 0.384 3.616 8 O -0.293 6.293 9 C 0.041 3.959 10 C -0.236 4.236 11 C 0.595 3.405 12 O -0.538 6.538 13 N -0.693 5.693 14 C 0.169 3.831 15 H 0.088 0.912 16 C 0.148 3.852 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.928 5.928 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.163 4.163 27 C -0.174 4.174 28 C -0.178 4.178 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.403 0.597 38 H 0.035 0.965 39 H 0.024 0.976 40 H 0.388 0.612 41 H 0.252 0.748 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 15.427 -7.027 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.190 6.190 3 C 0.185 3.815 4 C -0.323 4.323 5 C 0.031 3.969 6 N -0.294 5.294 7 C 0.205 3.795 8 O -0.198 6.198 9 C -0.054 4.054 10 C -0.243 4.243 11 C 0.379 3.621 12 O -0.415 6.415 13 N -0.342 5.342 14 C 0.065 3.935 15 H 0.106 0.894 16 C 0.020 3.980 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.576 5.576 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.182 4.182 27 C -0.211 4.211 28 C -0.215 4.215 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.222 0.778 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.135 0.865 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.861 15.302 -7.605 17.765 hybrid contribution -1.489 -0.608 1.163 1.985 sum 3.372 14.694 -6.441 16.394 Atomic orbital electron populations 1.23231 0.76640 1.05472 1.01047 1.86215 1.22686 1.24709 1.85424 1.18967 0.89999 0.85647 0.86883 1.22003 1.01886 0.92501 1.15926 1.22207 0.88465 0.97217 0.89044 1.67392 1.07946 1.30329 1.23716 1.19295 0.84400 0.87515 0.88284 1.86263 1.15353 1.31509 1.86722 1.22902 0.98554 0.81391 1.02520 1.18941 0.91472 0.93554 1.20298 1.17279 0.78435 0.82176 0.84181 1.90687 1.56294 1.63006 1.31559 1.45866 1.51713 1.28455 1.08170 1.20806 0.86746 0.85446 1.00527 0.89445 1.20915 0.88341 0.96310 0.92413 1.42379 1.00960 1.68191 1.26090 1.19265 0.91402 1.27746 0.98511 0.91173 1.24711 0.95975 1.01673 0.98452 1.69707 1.01337 1.51559 1.35035 0.86154 0.78459 0.79270 0.82521 1.20604 1.22011 1.21942 1.22630 0.95782 1.05816 0.94003 1.22901 0.99524 0.96312 1.02399 1.23221 1.03757 0.93644 1.00905 0.91931 0.92635 0.86933 0.83570 0.81877 0.92148 0.92081 0.88511 0.76269 0.94688 0.95818 0.77770 0.93817 0.87999 0.89341 0.88845 0.86471 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.84 101.05 0.99 1.38 16 2 O -0.28 -4.89 10.03 -18.20 -0.18 -5.07 16 3 C 0.24 3.82 6.74 -38.32 -0.26 3.56 16 4 C -0.30 -3.60 9.09 -39.34 -0.36 -3.95 16 5 C 0.19 2.04 11.15 -17.57 -0.20 1.84 16 6 N -0.57 -7.50 9.20 -13.06 -0.12 -7.62 16 7 C 0.38 5.87 7.51 -16.63 -0.12 5.74 16 8 O -0.29 -4.21 9.93 -17.98 -0.18 -4.39 16 9 C 0.04 0.41 10.38 101.05 1.05 1.46 16 10 C -0.24 -4.03 5.66 -104.57 -0.59 -4.62 16 11 C 0.59 11.36 5.75 -12.61 -0.07 11.29 16 12 O -0.54 -11.57 14.13 5.25 0.07 -11.49 16 13 N -0.69 -12.72 4.49 -54.95 -0.25 -12.96 16 14 C 0.17 3.11 2.43 -67.93 -0.17 2.95 16 15 H 0.09 1.81 7.33 -51.93 -0.38 1.43 16 16 C 0.15 3.03 5.80 -4.04 -0.02 3.01 16 17 N -0.73 -18.50 5.43 -59.91 -0.33 -18.83 16 18 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 22 Si 0.90 22.16 29.55 -169.99 -5.02 17.13 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 C -0.16 -2.53 5.36 -90.62 -0.49 -3.02 16 27 C -0.17 -2.49 10.18 -26.69 -0.27 -2.76 16 28 C -0.18 -2.73 9.73 -26.70 -0.26 -2.99 16 29 H 0.06 0.71 7.71 -51.93 -0.40 0.31 16 30 H 0.06 0.53 7.71 -51.93 -0.40 0.13 16 31 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.15 1.31 6.45 -52.49 -0.34 0.97 16 33 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 7.30 8.59 -40.82 -0.35 6.95 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.39 10.52 7.33 -40.82 -0.30 10.23 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.10 1.47 8.11 -51.93 -0.42 1.05 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 45 H 0.12 2.12 5.02 -51.92 -0.26 1.86 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -33.85 387.83 -7.06 -40.91 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -6.62 Total: 16.36 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.01 Total: 6.70 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 0.03 Total: -66.00 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.29 Total: -20.95 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.85 -7.06 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483572538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.406 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds