Wall clock time and date at job start Tue Mar 31 2020 19:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35503 * 117.00071 * 2 1 4 4 C 1.39212 * 120.89940 * 359.97438 * 3 2 1 5 5 C 1.37910 * 119.39099 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.29023 * 0.02562 * 5 4 3 7 7 C 1.32190 * 121.97608 * 359.67913 * 6 5 4 8 8 O 1.35429 * 119.77559 * 180.28850 * 7 6 5 9 9 C 1.42899 * 116.99682 * 0.29539 * 8 7 6 10 10 C 1.40285 * 120.44608 * 0.58356 * 7 6 5 11 11 C 1.47230 * 120.65344 * 179.73218 * 10 7 6 12 12 O 1.21627 * 119.99607 * 269.71671 * 11 10 7 13 13 N 1.34773 * 120.00479 * 89.72063 * 11 10 7 14 14 C 1.46500 * 120.00509 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.46593 * 324.99907 * 14 13 11 16 16 C 1.52998 * 109.47003 * 204.99732 * 14 13 11 17 17 N 1.46500 * 109.47071 * 55.00255 * 16 14 13 18 18 C 1.36942 * 120.00244 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99523 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00458 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00011 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00317 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46697 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47275 * 120.00247 * 22 20 18 25 25 H 1.48503 * 109.47012 * 240.00587 * 22 20 18 26 26 C 1.52996 * 109.47073 * 84.99721 * 14 13 11 27 27 C 1.53002 * 117.49888 * 231.25527 * 26 14 13 28 28 C 1.53000 * 117.50107 * 299.91289 * 26 14 13 29 29 H 1.09000 * 109.46849 * 299.99415 * 1 2 3 30 30 H 1.08994 * 109.47329 * 59.99805 * 1 2 3 31 31 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.30528 * 0.04354 * 4 3 2 33 33 H 1.08004 * 119.34978 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47637 * 299.99161 * 9 8 7 35 35 H 1.08997 * 109.47639 * 59.99648 * 9 8 7 36 36 H 1.09004 * 109.47039 * 179.97438 * 9 8 7 37 37 H 0.97006 * 119.99568 * 0.02562 * 13 11 10 38 38 H 1.08997 * 109.47096 * 174.99683 * 16 14 13 39 39 H 1.08996 * 109.47337 * 294.99987 * 16 14 13 40 40 H 0.96999 * 120.00125 * 359.97438 * 17 16 14 41 41 H 0.97001 * 120.00226 * 179.97438 * 21 20 18 42 42 H 1.09002 * 115.54951 * 85.58501 * 26 14 13 43 43 H 1.09000 * 117.49996 * 215.00804 * 27 26 14 44 44 H 1.08999 * 117.49664 * 0.02562 * 27 26 14 45 45 H 1.09008 * 117.49673 * 359.97438 * 28 26 14 46 46 H 1.08999 * 117.49942 * 144.97366 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9626 3.5985 -0.0011 6 7 3.2819 3.6626 -0.0016 7 6 4.0355 2.5766 0.0047 8 8 5.3847 2.6942 0.0098 9 6 5.9203 4.0190 0.0146 10 6 3.4472 1.3030 -0.0002 11 6 4.2822 0.0904 0.0008 12 8 4.6270 -0.4113 -1.0521 13 7 4.6644 -0.4637 1.1684 14 6 5.4958 -1.6700 1.1694 15 1 5.2167 -2.3041 0.3280 16 6 5.2830 -2.4349 2.4773 17 7 3.8550 -2.7094 2.6556 18 6 3.4213 -3.3876 3.7635 19 1 4.1320 -3.7204 4.5055 20 6 2.0683 -3.6473 3.9328 21 7 1.2022 -3.2422 3.0283 22 14 1.4768 -4.5730 5.4436 23 1 2.6400 -4.9169 6.3003 24 1 0.5328 -3.7196 6.2089 25 1 0.7874 -5.8190 5.0223 26 6 6.9684 -1.2745 1.0436 27 6 7.7948 -1.9645 -0.0436 28 6 7.3871 -0.4981 -0.2064 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2249 2.3528 -0.0002 33 1 1.3881 4.5130 -0.0010 34 1 5.5835 4.5504 -0.8755 35 1 5.5769 4.5466 0.9044 36 1 7.0092 3.9706 0.0189 37 1 4.3890 -0.0637 2.0082 38 1 5.8321 -3.3757 2.4414 39 1 5.6447 -1.8347 3.3122 40 1 3.2167 -2.4102 1.9894 41 1 0.2568 -3.4239 3.1464 42 1 7.4713 -1.0308 1.9795 43 1 8.8413 -2.1747 0.1770 44 1 7.2891 -2.6998 -0.6695 45 1 6.6135 -0.2693 -0.9395 46 1 8.1652 0.2568 -0.0929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483572538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:41 Heat of formation + Delta-G solvation = -51.468148 kcal Electronic energy + Delta-G solvation = -30276.323224 eV Core-core repulsion = 26167.637663 eV Total energy + Delta-G solvation = -4108.685560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18264 -40.67824 -40.20787 -38.35981 -38.27911 -36.60003 -34.96258 -33.33560 -32.60521 -31.78093 -29.63982 -28.88379 -27.75852 -26.13924 -25.39211 -23.54035 -23.30265 -23.04231 -22.13210 -21.30025 -20.00153 -19.33301 -18.72952 -18.47879 -17.71351 -17.51445 -17.07497 -16.69661 -16.61816 -16.40205 -16.13296 -15.79870 -15.69631 -15.11510 -15.08703 -14.80603 -14.69161 -14.27649 -14.24998 -13.89158 -13.62289 -13.17644 -12.82888 -12.77520 -12.70315 -12.60901 -12.48855 -12.45705 -12.22013 -12.11973 -12.03045 -11.83437 -11.46528 -11.17081 -11.03078 -10.97096 -10.60789 -10.03870 -9.94430 -9.68390 -8.98956 -7.90131 -5.20742 -0.13062 0.20133 1.48155 1.49246 1.54880 1.58803 1.66107 2.13496 2.46406 2.56658 2.60681 3.03337 3.33712 3.42304 3.56249 3.62557 3.81121 3.93257 4.00697 4.11904 4.18166 4.20343 4.26528 4.35385 4.37872 4.42011 4.46167 4.46478 4.60374 4.63920 4.73135 4.78021 4.83595 4.88463 4.92861 5.06465 5.10807 5.13907 5.29968 5.39432 5.51852 5.58050 6.10178 6.15508 6.29137 6.52818 6.71960 7.21936 7.36237 8.07863 8.34030 9.32347 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009507 B = 0.004707 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.623837 B = 5947.025565 C = 7975.323208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.324 6.324 3 C 0.221 3.779 4 C -0.293 4.293 5 C 0.195 3.805 6 N -0.565 5.565 7 C 0.380 3.620 8 O -0.312 6.312 9 C 0.037 3.963 10 C -0.273 4.273 11 C 0.595 3.405 12 O -0.573 6.573 13 N -0.691 5.691 14 C 0.178 3.822 15 H 0.056 0.944 16 C 0.152 3.848 17 N -0.743 5.743 18 C -0.247 4.247 19 H 0.077 0.923 20 C -0.069 4.069 21 N -0.960 5.960 22 Si 0.971 3.029 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.296 1.296 26 C -0.166 4.166 27 C -0.162 4.162 28 C -0.177 4.177 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.214 0.786 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.402 0.598 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 17.285 -6.041 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.234 6.234 3 C 0.166 3.834 4 C -0.314 4.314 5 C 0.041 3.959 6 N -0.293 5.293 7 C 0.201 3.799 8 O -0.218 6.218 9 C -0.058 4.058 10 C -0.280 4.280 11 C 0.382 3.618 12 O -0.453 6.453 13 N -0.338 5.338 14 C 0.074 3.926 15 H 0.074 0.926 16 C 0.025 3.975 17 N -0.386 5.386 18 C -0.379 4.379 19 H 0.095 0.905 20 C -0.262 4.262 21 N -0.610 5.610 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.224 1.224 26 C -0.186 4.186 27 C -0.199 4.199 28 C -0.214 4.214 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.197 0.803 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.237 0.763 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.277 17.173 -6.599 19.139 hybrid contribution -1.602 -1.126 0.816 2.122 sum 3.674 16.046 -5.783 17.448 Atomic orbital electron populations 1.23417 0.74828 1.05421 1.03231 1.86145 1.24898 1.26408 1.85946 1.19282 0.89907 0.86437 0.87810 1.22362 1.03329 0.91216 1.14459 1.23067 0.87888 0.98669 0.86274 1.67541 1.08954 1.29104 1.23740 1.19351 0.85007 0.87316 0.88226 1.86236 1.15154 1.33939 1.86521 1.23174 0.99794 0.79799 1.02988 1.19018 0.92162 0.93350 1.23429 1.17641 0.77993 0.82622 0.83575 1.90651 1.57716 1.64346 1.32620 1.45856 1.51685 1.28171 1.08129 1.20607 0.88841 0.85110 0.98061 0.92613 1.21018 0.85813 0.96857 0.93840 1.42531 1.02692 1.68090 1.25271 1.19641 0.91799 1.27374 0.99057 0.90531 1.25511 0.96237 1.03053 1.01365 1.69865 1.01366 1.52913 1.36838 0.85111 0.78004 0.77535 0.79273 1.19235 1.21931 1.22359 1.22553 0.93915 1.06889 0.95233 1.22992 1.00725 0.95301 1.00891 1.23121 1.03557 0.94922 0.99757 0.90664 0.89367 0.88269 0.80328 0.76996 0.91716 0.91465 0.86203 0.76300 0.94313 0.94374 0.79299 0.94128 0.86015 0.86249 0.90174 0.89437 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.84 113.37 1.12 1.74 16 2 O -0.32 -11.74 10.03 -88.04 -0.88 -12.62 16 3 C 0.22 7.10 6.74 23.09 0.16 7.25 16 4 C -0.29 -6.39 9.09 22.43 0.20 -6.19 16 5 C 0.20 3.70 11.15 84.58 0.94 4.64 16 6 N -0.57 -13.96 9.20 -308.26 -2.84 -16.80 16 7 C 0.38 11.58 7.51 85.14 0.64 12.22 16 8 O -0.31 -8.95 9.93 -87.25 -0.87 -9.82 16 9 C 0.04 0.68 10.38 113.37 1.18 1.86 16 10 C -0.27 -9.63 5.66 -19.83 -0.11 -9.75 16 11 C 0.60 24.05 5.75 86.61 0.50 24.55 16 12 O -0.57 -26.35 14.13 -4.12 -0.06 -26.41 16 13 N -0.69 -26.54 4.49 -446.00 -2.00 -28.55 16 14 C 0.18 6.79 2.43 44.99 0.11 6.90 16 15 H 0.06 2.47 7.33 -2.39 -0.02 2.45 16 16 C 0.15 6.26 5.80 86.38 0.50 6.76 16 17 N -0.74 -38.51 5.43 -343.46 -1.87 -40.38 16 18 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.96 -57.79 13.06 21.65 0.28 -57.51 16 22 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 26 C -0.17 -5.11 5.36 -10.79 -0.06 -5.16 16 27 C -0.16 -4.48 10.18 30.62 0.31 -4.17 16 28 C -0.18 -5.34 9.73 30.62 0.30 -5.04 16 29 H 0.07 1.66 7.71 -2.39 -0.02 1.64 16 30 H 0.09 1.59 7.71 -2.39 -0.02 1.57 16 31 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.18 2.60 6.45 -2.91 -0.02 2.58 16 33 H 0.21 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 36 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.40 15.28 8.59 -92.70 -0.80 14.49 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.37 21.25 7.33 -92.71 -0.68 20.57 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.12 3.28 8.11 -2.39 -0.02 3.26 16 43 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 45 H 0.09 3.28 5.02 -2.38 -0.01 3.27 16 46 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -76.35 387.83 0.43 -75.92 By element: Atomic # 1 Polarization: 49.63 SS G_CDS: -0.45 Total: 49.18 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 7.09 Total: 19.21 kcal Atomic # 7 Polarization: -136.81 SS G_CDS: -6.42 Total: -143.23 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -1.81 Total: -48.85 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.35 0.43 -75.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483572538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.449 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds