Wall clock time and date at job start Tue Mar 31 2020 19:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35503 * 116.99650 * 2 1 4 4 C 1.39213 * 120.90304 * 359.97438 * 3 2 1 5 5 C 1.37903 * 119.39285 * 180.02562 * 4 3 2 6 6 N 1.32081 * 121.28752 * 359.97438 * 5 4 3 7 7 C 1.32187 * 121.97780 * 359.70169 * 6 5 4 8 8 O 1.35425 * 119.77433 * 180.28963 * 7 6 5 9 9 C 1.42903 * 117.00276 * 0.29161 * 8 7 6 10 10 C 1.40284 * 120.44537 * 0.58265 * 7 6 5 11 11 C 1.47234 * 120.65333 * 179.70241 * 10 7 6 12 12 O 1.21623 * 120.00192 * 269.72581 * 11 10 7 13 13 N 1.34777 * 119.99507 * 89.99816 * 11 10 7 14 14 C 1.46505 * 119.99724 * 179.72631 * 13 11 10 15 15 H 1.08994 * 109.47052 * 35.00246 * 14 13 11 16 16 C 1.52995 * 109.47024 * 155.00353 * 14 13 11 17 17 N 1.46500 * 109.47361 * 304.99744 * 16 14 13 18 18 C 1.36931 * 120.00091 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00634 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99940 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99939 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00267 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46958 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47370 * 119.99806 * 22 20 18 25 25 H 1.48496 * 109.47061 * 239.99789 * 22 20 18 26 26 C 1.52999 * 109.46989 * 275.00379 * 14 13 11 27 27 C 1.53001 * 117.50043 * 128.74757 * 26 14 13 28 28 C 1.52991 * 117.50296 * 60.08546 * 26 14 13 29 29 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47231 * 299.99121 * 1 2 3 31 31 H 1.08997 * 109.47348 * 59.99974 * 1 2 3 32 32 H 1.08004 * 120.30533 * 0.04219 * 4 3 2 33 33 H 1.07994 * 119.35378 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47207 * 299.99813 * 9 8 7 35 35 H 1.09003 * 109.47142 * 60.00209 * 9 8 7 36 36 H 1.09009 * 109.47085 * 179.97438 * 9 8 7 37 37 H 0.97000 * 120.00483 * 359.73063 * 13 11 10 38 38 H 1.09005 * 109.47349 * 64.99828 * 16 14 13 39 39 H 1.09002 * 109.47351 * 184.99998 * 16 14 13 40 40 H 0.97001 * 119.99299 * 0.02562 * 17 16 14 41 41 H 0.96999 * 120.00064 * 180.02562 * 21 20 18 42 42 H 1.09010 * 115.54747 * 274.41359 * 26 14 13 43 43 H 1.08992 * 117.49618 * 359.97438 * 27 26 14 44 44 H 1.08998 * 117.49687 * 145.01732 * 27 26 14 45 45 H 1.09006 * 117.50426 * 214.97913 * 28 26 14 46 46 H 1.09002 * 117.50103 * 359.97404 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3867 -0.0005 5 6 1.9625 3.5985 -0.0011 6 7 3.2818 3.6626 -0.0006 7 6 4.0354 2.5766 0.0063 8 8 5.3845 2.6943 0.0125 9 6 5.9202 4.0191 0.0176 10 6 3.4471 1.3031 0.0011 11 6 4.2822 0.0905 0.0021 12 8 4.6275 -0.4110 -1.0507 13 7 4.6593 -0.4669 1.1698 14 6 5.4852 -1.6770 1.1709 15 1 6.1789 -1.6441 0.3308 16 6 6.2731 -1.7555 2.4800 17 7 7.0433 -0.5225 2.6612 18 6 7.8309 -0.3639 3.7701 19 1 7.8841 -1.1476 4.5113 20 6 8.5602 0.8046 3.9420 21 7 8.4950 1.7600 3.0389 22 14 9.6342 1.0213 5.4549 23 1 9.5346 -0.1887 6.3100 24 1 11.0456 1.2162 5.0364 25 1 9.1766 2.2084 6.2208 26 6 4.5861 -2.9082 1.0421 27 6 4.9340 -3.9264 -0.0457 28 6 3.7132 -3.0177 -0.2096 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 0.2248 2.3528 -0.0003 33 1 1.3880 4.5130 -0.0019 34 1 5.5840 4.5504 -0.8728 35 1 5.5762 4.5467 0.9072 36 1 7.0092 3.9707 0.0227 37 1 4.3839 -0.0670 2.0095 38 1 5.5815 -1.8777 3.3136 39 1 6.9531 -2.6066 2.4444 40 1 6.9952 0.1815 1.9957 41 1 9.0049 2.5764 3.1589 42 1 4.1760 -3.2907 1.9768 43 1 5.8032 -3.7189 -0.6697 44 1 4.7524 -4.9786 0.1733 45 1 2.7288 -3.4726 -0.0985 46 1 3.7790 -2.2124 -0.9412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483572542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:45 Heat of formation + Delta-G solvation = -24.674729 kcal Electronic energy + Delta-G solvation = -30275.152622 eV Core-core repulsion = 26167.628911 eV Total energy + Delta-G solvation = -4107.523711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08441 -39.29462 -39.15630 -37.23124 -36.92199 -34.88907 -33.26348 -32.00146 -30.96440 -30.65581 -28.08260 -27.90425 -26.72215 -24.63625 -23.79372 -22.50715 -22.03403 -21.42101 -20.83454 -19.87374 -18.94037 -17.70781 -17.55815 -16.86638 -16.49652 -16.37314 -15.91000 -15.58841 -15.21565 -14.93602 -14.84728 -14.66374 -14.21798 -13.75428 -13.72216 -13.26602 -13.17819 -13.04764 -12.94035 -12.66468 -12.03807 -11.85596 -11.78371 -11.57433 -11.46898 -11.10621 -11.00954 -10.94162 -10.84023 -10.78202 -10.14171 -10.09586 -9.97279 -9.83366 -9.62019 -9.33382 -9.03611 -8.86245 -8.57438 -8.45738 -6.88972 -5.71851 -3.01277 0.91641 1.23406 2.61558 2.97025 3.42225 3.44767 3.50486 3.52069 3.52499 3.68595 4.21807 4.34886 4.51178 4.60295 4.80110 4.85860 4.86581 4.97730 5.01241 5.19057 5.29069 5.35408 5.42544 5.51462 5.57518 5.58762 5.62658 5.66860 5.79530 5.89700 5.93255 5.95204 6.02254 6.05041 6.20356 6.33502 6.47002 6.58717 6.66269 6.77475 6.93928 7.07015 7.33293 7.73503 7.79115 8.00836 8.45328 8.67380 9.57467 10.14533 10.50803 11.49887 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.004712 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.068941 B = 5940.400210 C = 7970.750894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.296 6.296 3 C 0.232 3.768 4 C -0.308 4.308 5 C 0.189 3.811 6 N -0.561 5.561 7 C 0.394 3.606 8 O -0.279 6.279 9 C 0.047 3.953 10 C -0.236 4.236 11 C 0.595 3.405 12 O -0.537 6.537 13 N -0.693 5.693 14 C 0.169 3.831 15 H 0.088 0.912 16 C 0.149 3.851 17 N -0.731 5.731 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.926 5.926 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 C -0.162 4.162 27 C -0.174 4.174 28 C -0.179 4.179 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.403 0.597 38 H 0.023 0.977 39 H 0.035 0.965 40 H 0.388 0.612 41 H 0.253 0.747 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.691 -0.083 -7.062 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.206 6.206 3 C 0.177 3.823 4 C -0.330 4.330 5 C 0.033 3.967 6 N -0.289 5.289 7 C 0.215 3.785 8 O -0.183 6.183 9 C -0.048 4.048 10 C -0.243 4.243 11 C 0.379 3.621 12 O -0.415 6.415 13 N -0.342 5.342 14 C 0.064 3.936 15 H 0.106 0.894 16 C 0.020 3.980 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.182 4.182 27 C -0.211 4.211 28 C -0.216 4.216 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.181 0.819 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.237 0.763 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.223 0.777 41 H 0.063 0.937 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.607 -0.121 -7.639 19.193 hybrid contribution -0.267 0.241 1.162 1.216 sum -17.873 0.120 -6.477 19.011 Atomic orbital electron populations 1.23192 0.77374 1.04556 1.01762 1.86095 1.22056 1.25683 1.86736 1.18809 0.89833 0.85052 0.88589 1.21900 1.01476 0.92555 1.17043 1.22255 0.88657 0.97177 0.88624 1.67480 1.07795 1.30554 1.23103 1.19496 0.85118 0.87341 0.86554 1.86373 1.14374 1.32201 1.85375 1.22949 0.99504 0.80557 1.01817 1.18955 0.91236 0.93827 1.20278 1.17275 0.78647 0.81956 0.84186 1.90686 1.56219 1.63060 1.31563 1.45867 1.52255 1.27911 1.08164 1.20811 0.90559 0.81604 1.00580 0.89412 1.20909 0.93205 0.91502 0.92335 1.42376 1.53146 1.16026 1.26070 1.19248 1.18825 1.00529 0.98517 0.91198 1.24726 1.00794 0.96814 0.98430 1.69707 1.45347 1.07363 1.35026 0.86158 0.80315 0.77389 0.82553 1.20636 1.21935 1.21999 1.22631 1.03189 0.98419 0.93940 1.22902 1.00227 0.95576 1.02411 1.23217 0.94058 1.03362 1.00951 0.87725 0.92060 0.92151 0.83835 0.81911 0.92628 0.91943 0.87683 0.76265 0.95879 0.94716 0.77735 0.93741 0.88020 0.88809 0.89340 0.90061 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.30 -3.70 10.03 -18.20 -0.18 -3.89 16 3 C 0.23 3.18 6.74 -38.32 -0.26 2.92 16 4 C -0.31 -3.24 9.09 -39.34 -0.36 -3.60 16 5 C 0.19 2.09 11.15 -17.57 -0.20 1.90 16 6 N -0.56 -8.29 9.20 -13.06 -0.12 -8.41 16 7 C 0.39 6.86 7.51 -16.63 -0.12 6.73 16 8 O -0.28 -5.35 9.93 -17.97 -0.18 -5.53 16 9 C 0.05 0.72 10.38 101.05 1.05 1.77 16 10 C -0.24 -4.03 5.66 -104.57 -0.59 -4.63 16 11 C 0.59 11.36 5.75 -12.60 -0.07 11.29 16 12 O -0.54 -11.56 14.13 5.26 0.07 -11.49 16 13 N -0.69 -12.72 4.49 -54.94 -0.25 -12.97 16 14 C 0.17 3.11 2.43 -67.93 -0.17 2.94 16 15 H 0.09 1.82 7.33 -51.93 -0.38 1.44 16 16 C 0.15 3.05 5.80 -4.04 -0.02 3.02 16 17 N -0.73 -18.66 5.43 -59.91 -0.33 -18.99 16 18 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.33 5.50 -17.42 -0.10 -0.42 16 21 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 22 Si 0.90 22.40 29.55 -169.99 -5.02 17.37 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C -0.16 -2.50 5.36 -90.62 -0.49 -2.99 16 27 C -0.17 -2.47 10.18 -26.69 -0.27 -2.74 16 28 C -0.18 -2.69 9.73 -26.70 -0.26 -2.95 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 31 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 32 H 0.14 0.98 6.45 -52.48 -0.34 0.65 16 33 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 37 H 0.40 7.31 8.59 -40.82 -0.35 6.96 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.39 10.66 7.33 -40.82 -0.30 10.36 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.10 1.45 8.11 -51.92 -0.42 1.03 16 43 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.12 2.09 5.02 -51.93 -0.26 1.83 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -34.41 387.83 -7.06 -41.47 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -6.62 Total: 15.99 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.01 Total: 7.57 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: 0.03 Total: -67.34 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.29 Total: -20.90 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.41 -7.06 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483572542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.796 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds