Wall clock time and date at job start Tue Mar 31 2020 19:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35503 * 116.99650 * 2 1 4 4 C 1.39213 * 120.90304 * 359.97438 * 3 2 1 5 5 C 1.37903 * 119.39285 * 180.02562 * 4 3 2 6 6 N 1.32081 * 121.28752 * 359.97438 * 5 4 3 7 7 C 1.32187 * 121.97780 * 359.70169 * 6 5 4 8 8 O 1.35425 * 119.77433 * 180.28963 * 7 6 5 9 9 C 1.42903 * 117.00276 * 0.29161 * 8 7 6 10 10 C 1.40284 * 120.44537 * 0.58265 * 7 6 5 11 11 C 1.47234 * 120.65333 * 179.70241 * 10 7 6 12 12 O 1.21623 * 120.00192 * 269.72581 * 11 10 7 13 13 N 1.34777 * 119.99507 * 89.99816 * 11 10 7 14 14 C 1.46505 * 119.99724 * 179.72631 * 13 11 10 15 15 H 1.08994 * 109.47052 * 35.00246 * 14 13 11 16 16 C 1.52995 * 109.47024 * 155.00353 * 14 13 11 17 17 N 1.46500 * 109.47361 * 304.99744 * 16 14 13 18 18 C 1.36931 * 120.00091 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00634 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99940 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99939 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00267 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46958 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47370 * 119.99806 * 22 20 18 25 25 H 1.48496 * 109.47061 * 239.99789 * 22 20 18 26 26 C 1.52999 * 109.46989 * 275.00379 * 14 13 11 27 27 C 1.53001 * 117.50043 * 128.74757 * 26 14 13 28 28 C 1.52991 * 117.50296 * 60.08546 * 26 14 13 29 29 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47231 * 299.99121 * 1 2 3 31 31 H 1.08997 * 109.47348 * 59.99974 * 1 2 3 32 32 H 1.08004 * 120.30533 * 0.04219 * 4 3 2 33 33 H 1.07994 * 119.35378 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47207 * 299.99813 * 9 8 7 35 35 H 1.09003 * 109.47142 * 60.00209 * 9 8 7 36 36 H 1.09009 * 109.47085 * 179.97438 * 9 8 7 37 37 H 0.97000 * 120.00483 * 359.73063 * 13 11 10 38 38 H 1.09005 * 109.47349 * 64.99828 * 16 14 13 39 39 H 1.09002 * 109.47351 * 184.99998 * 16 14 13 40 40 H 0.97001 * 119.99299 * 0.02562 * 17 16 14 41 41 H 0.96999 * 120.00064 * 180.02562 * 21 20 18 42 42 H 1.09010 * 115.54747 * 274.41359 * 26 14 13 43 43 H 1.08992 * 117.49618 * 359.97438 * 27 26 14 44 44 H 1.08998 * 117.49687 * 145.01732 * 27 26 14 45 45 H 1.09006 * 117.50426 * 214.97913 * 28 26 14 46 46 H 1.09002 * 117.50103 * 359.97404 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3867 -0.0005 5 6 1.9625 3.5985 -0.0011 6 7 3.2818 3.6626 -0.0006 7 6 4.0354 2.5766 0.0063 8 8 5.3845 2.6943 0.0125 9 6 5.9202 4.0191 0.0176 10 6 3.4471 1.3031 0.0011 11 6 4.2822 0.0905 0.0021 12 8 4.6275 -0.4110 -1.0507 13 7 4.6593 -0.4669 1.1698 14 6 5.4852 -1.6770 1.1709 15 1 6.1789 -1.6441 0.3308 16 6 6.2731 -1.7555 2.4800 17 7 7.0433 -0.5225 2.6612 18 6 7.8309 -0.3639 3.7701 19 1 7.8841 -1.1476 4.5113 20 6 8.5602 0.8046 3.9420 21 7 8.4950 1.7600 3.0389 22 14 9.6342 1.0213 5.4549 23 1 9.5346 -0.1887 6.3100 24 1 11.0456 1.2162 5.0364 25 1 9.1766 2.2084 6.2208 26 6 4.5861 -2.9082 1.0421 27 6 4.9340 -3.9264 -0.0457 28 6 3.7132 -3.0177 -0.2096 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 0.2248 2.3528 -0.0003 33 1 1.3880 4.5130 -0.0019 34 1 5.5840 4.5504 -0.8728 35 1 5.5762 4.5467 0.9072 36 1 7.0092 3.9707 0.0227 37 1 4.3839 -0.0670 2.0095 38 1 5.5815 -1.8777 3.3136 39 1 6.9531 -2.6066 2.4444 40 1 6.9952 0.1815 1.9957 41 1 9.0049 2.5764 3.1589 42 1 4.1760 -3.2907 1.9768 43 1 5.8032 -3.7189 -0.6697 44 1 4.7524 -4.9786 0.1733 45 1 2.7288 -3.4726 -0.0985 46 1 3.7790 -2.2124 -0.9412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483572542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:44 Heat of formation + Delta-G solvation = -51.495658 kcal Electronic energy + Delta-G solvation = -30276.315664 eV Core-core repulsion = 26167.628911 eV Total energy + Delta-G solvation = -4108.686753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18060 -40.67867 -40.19880 -38.35932 -38.28405 -36.59853 -34.96163 -33.33751 -32.60464 -31.76915 -29.63899 -28.86871 -27.76365 -26.13769 -25.38788 -23.53655 -23.30615 -23.04242 -22.13130 -21.29905 -19.99276 -19.31498 -18.78056 -18.44650 -17.66183 -17.56194 -17.06727 -16.68987 -16.60942 -16.38663 -16.12219 -15.83327 -15.69260 -15.15481 -14.97916 -14.90583 -14.60821 -14.35854 -14.25330 -13.76063 -13.70303 -13.17685 -12.83066 -12.79340 -12.70132 -12.58872 -12.49077 -12.41345 -12.27057 -12.14226 -12.02817 -11.83228 -11.40555 -11.17676 -11.02229 -10.96970 -10.60064 -10.04183 -9.94749 -9.66622 -8.99040 -7.89750 -5.20721 -0.11918 0.21137 1.47930 1.48975 1.54881 1.58766 1.66913 2.13901 2.48039 2.56831 2.61549 3.02912 3.32697 3.42600 3.58047 3.61804 3.81553 3.95260 4.00053 4.12141 4.18098 4.22090 4.33835 4.36572 4.38421 4.40871 4.41648 4.46342 4.58613 4.63884 4.73121 4.78629 4.83355 4.88323 4.89486 5.05986 5.10955 5.15068 5.29891 5.39388 5.51788 5.58070 6.10629 6.17448 6.28965 6.52933 6.76368 7.21985 7.36032 8.08297 8.33833 9.32616 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.004712 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.068941 B = 5940.400210 C = 7970.750894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.231 3.769 4 C -0.287 4.287 5 C 0.189 3.811 6 N -0.573 5.573 7 C 0.371 3.629 8 O -0.319 6.319 9 C 0.049 3.951 10 C -0.272 4.272 11 C 0.595 3.405 12 O -0.573 6.573 13 N -0.690 5.690 14 C 0.178 3.822 15 H 0.055 0.945 16 C 0.152 3.848 17 N -0.743 5.743 18 C -0.247 4.247 19 H 0.078 0.922 20 C -0.070 4.070 21 N -0.960 5.960 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.293 1.293 26 C -0.165 4.165 27 C -0.163 4.163 28 C -0.175 4.175 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.190 0.810 33 H 0.211 0.789 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.402 0.598 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.732 -0.585 -6.047 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.228 6.228 3 C 0.176 3.824 4 C -0.308 4.308 5 C 0.035 3.965 6 N -0.302 5.302 7 C 0.192 3.808 8 O -0.225 6.225 9 C -0.045 4.045 10 C -0.279 4.279 11 C 0.382 3.618 12 O -0.453 6.453 13 N -0.338 5.338 14 C 0.073 3.927 15 H 0.073 0.927 16 C 0.025 3.975 17 N -0.387 5.387 18 C -0.378 4.378 19 H 0.096 0.904 20 C -0.263 4.263 21 N -0.611 5.611 22 Si 0.801 3.199 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.221 1.221 26 C -0.185 4.185 27 C -0.200 4.200 28 C -0.212 4.212 29 H 0.138 0.862 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.207 0.793 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.237 0.763 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.141 0.859 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.124 0.876 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.691 -0.666 -6.604 21.730 hybrid contribution 0.521 0.360 0.803 1.023 sum -20.170 -0.305 -5.801 20.990 Atomic orbital electron populations 1.23605 0.74489 1.06357 1.03574 1.86078 1.25012 1.25439 1.86308 1.18959 0.88806 0.86687 0.87951 1.22363 1.03450 0.90821 1.14184 1.23142 0.87545 0.99391 0.86462 1.67527 1.09517 1.29451 1.23658 1.19623 0.84635 0.88256 0.88253 1.86295 1.16265 1.33762 1.86197 1.22966 0.99068 0.79848 1.02625 1.19015 0.92872 0.92650 1.23391 1.17643 0.78299 0.82318 0.83576 1.90650 1.57713 1.64346 1.32629 1.45855 1.51905 1.27947 1.08123 1.20613 0.90703 0.83341 0.98021 0.92713 1.21025 0.93141 0.89507 0.93856 1.42546 1.53639 1.17237 1.25231 1.19643 1.18581 1.00585 0.99038 0.90404 1.25547 1.02580 0.96783 1.01413 1.69877 1.46453 1.07769 1.36962 0.85099 0.77949 0.77566 0.79242 1.19034 1.22364 1.22052 1.22541 1.03237 0.97485 0.95240 1.22993 0.99230 0.96871 1.00943 1.23120 0.95523 1.02892 0.99676 0.86189 0.90066 0.90329 0.79257 0.77241 0.90784 0.92020 0.88415 0.76302 0.94307 0.94319 0.79356 0.94175 0.85950 0.90272 0.86224 0.87587 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.32 -7.48 10.03 -88.04 -0.88 -8.36 16 3 C 0.23 6.09 6.74 23.09 0.16 6.24 16 4 C -0.29 -5.08 9.09 22.42 0.20 -4.88 16 5 C 0.19 3.64 11.15 84.58 0.94 4.59 16 6 N -0.57 -16.63 9.20 -308.28 -2.84 -19.46 16 7 C 0.37 13.42 7.51 85.14 0.64 14.06 16 8 O -0.32 -13.19 9.93 -87.20 -0.87 -14.06 16 9 C 0.05 1.64 10.38 113.37 1.18 2.81 16 10 C -0.27 -9.62 5.66 -19.83 -0.11 -9.74 16 11 C 0.60 24.06 5.75 86.61 0.50 24.56 16 12 O -0.57 -26.38 14.13 -4.10 -0.06 -26.43 16 13 N -0.69 -26.56 4.49 -445.99 -2.00 -28.56 16 14 C 0.18 6.77 2.43 44.99 0.11 6.88 16 15 H 0.05 2.44 7.33 -2.39 -0.02 2.42 16 16 C 0.15 6.29 5.80 86.38 0.50 6.79 16 17 N -0.74 -39.06 5.43 -343.46 -1.87 -40.93 16 18 C -0.25 -13.94 9.99 84.04 0.84 -13.10 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 21 N -0.96 -59.33 13.06 21.65 0.28 -59.05 16 22 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 C -0.17 -5.00 5.36 -10.80 -0.06 -5.06 16 27 C -0.16 -4.46 10.18 30.62 0.31 -4.14 16 28 C -0.18 -5.15 9.73 30.61 0.30 -4.86 16 29 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.08 0.57 7.71 -2.39 -0.02 0.55 16 31 H 0.08 0.58 7.71 -2.39 -0.02 0.56 16 32 H 0.19 1.52 6.45 -2.91 -0.02 1.50 16 33 H 0.21 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 35 H 0.06 1.98 8.11 -2.39 -0.02 1.96 16 36 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 37 H 0.40 15.29 8.59 -92.71 -0.80 14.50 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.37 21.63 7.33 -92.71 -0.68 20.95 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.12 3.22 8.11 -2.38 -0.02 3.20 16 43 H 0.08 2.40 8.05 -2.39 -0.02 2.38 16 44 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 46 H 0.09 3.21 5.02 -2.39 -0.01 3.20 16 Total: -1.00 -79.20 387.83 0.43 -78.76 By element: Atomic # 1 Polarization: 48.16 SS G_CDS: -0.45 Total: 47.71 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 7.09 Total: 21.81 kcal Atomic # 7 Polarization: -141.57 SS G_CDS: -6.42 Total: -147.99 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.81 Total: -48.85 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -79.20 0.43 -78.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483572542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.268 kcal (2) G-P(sol) polarization free energy of solvation -79.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds