Wall clock time and date at job start Tue Mar 31 2020 19:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35913 * 117.00197 * 2 1 4 4 C 1.39138 * 120.47391 * 0.24959 * 3 2 1 5 5 C 1.38531 * 118.37599 * 180.26575 * 4 3 2 6 6 C 1.38261 * 119.22042 * 359.74860 * 5 4 3 7 7 N 1.31843 * 120.88634 * 359.97438 * 6 5 4 8 8 C 1.31844 * 121.78185 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65842 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47597 * 89.99652 * 9 8 7 11 11 O 1.21290 * 119.99644 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00294 * 179.97438 * 10 9 8 13 13 C 1.46509 * 120.00099 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46781 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.71117 * 299.94417 * 14 13 12 16 16 C 1.53296 * 109.67734 * 179.40343 * 14 13 12 17 17 O 1.42964 * 109.22056 * 187.97558 * 16 14 13 18 18 C 1.42966 * 114.16788 * 62.58518 * 17 16 14 19 19 C 1.53299 * 109.21970 * 297.41580 * 18 17 16 20 20 N 1.47152 * 108.38366 * 52.30441 * 19 18 17 21 21 C 1.36941 * 120.98422 * 129.18934 * 20 19 18 22 22 H 1.07998 * 119.99927 * 211.62045 * 21 20 19 23 23 C 1.38813 * 119.99706 * 31.61580 * 21 20 19 24 24 N 1.31621 * 119.99866 * 9.82701 * 23 21 20 25 25 Si 1.86797 * 119.99646 * 189.82423 * 23 21 20 26 26 H 1.48497 * 109.47223 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46918 * 120.00609 * 25 23 21 28 28 H 1.48508 * 109.46969 * 240.00051 * 25 23 21 29 29 H 1.09003 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47258 * 299.99804 * 1 2 3 31 31 H 1.08996 * 109.47209 * 60.00228 * 1 2 3 32 32 H 1.07999 * 120.81270 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.39431 * 179.73037 * 5 4 3 34 34 H 1.08000 * 119.55307 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46799 * 329.99002 * 9 8 7 36 36 H 1.09006 * 109.46774 * 209.99963 * 9 8 7 37 37 H 0.97003 * 120.00056 * 0.02562 * 12 10 9 38 38 H 1.08994 * 109.46923 * 60.00334 * 13 12 10 39 39 H 1.09001 * 109.46896 * 300.00004 * 13 12 10 40 40 H 1.08995 * 109.51152 * 68.05561 * 16 14 13 41 41 H 1.08997 * 109.55656 * 307.92367 * 16 14 13 42 42 H 1.09001 * 109.51259 * 177.49712 * 18 17 16 43 43 H 1.08996 * 109.51102 * 57.34113 * 18 17 16 44 44 H 1.08990 * 109.68472 * 292.57832 * 19 18 17 45 45 H 1.08996 * 109.67908 * 172.02025 * 19 18 17 46 46 H 0.96999 * 119.99782 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 0.0052 5 6 1.9716 3.5946 -0.0007 6 6 3.3542 3.5975 -0.0061 7 7 4.0334 2.4675 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0330 0.0003 10 6 4.5346 -0.3839 1.4210 11 8 4.1079 0.2788 2.3429 12 7 5.2593 -1.4932 1.6673 13 6 5.5323 -1.8982 3.0486 14 6 6.3684 -3.1795 3.0485 15 1 5.8225 -3.9747 2.5410 16 6 6.6695 -3.5994 4.4917 17 8 7.6008 -4.6841 4.4817 18 6 8.8718 -4.3591 3.9135 19 6 8.6835 -3.9780 2.4406 20 7 7.6460 -2.9376 2.3594 21 6 7.8650 -1.7761 1.6678 22 1 7.3974 -0.8582 1.9921 23 6 8.6881 -1.7786 0.5500 24 7 9.1018 -2.9193 0.0400 25 14 9.2085 -0.1631 -0.2301 26 1 8.6135 0.9669 0.5276 27 1 10.6891 -0.0534 -0.2004 28 1 8.7370 -0.1187 -1.6377 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2185 2.3519 0.0098 33 1 1.4234 4.5251 -0.0012 34 1 3.8849 4.5381 -0.0111 35 1 5.1960 0.2138 -0.5179 36 1 3.7054 -0.7591 -0.5093 37 1 5.6009 -2.0230 0.9300 38 1 4.5907 -2.0784 3.5672 39 1 6.0817 -1.1062 3.5575 40 1 5.7472 -3.9160 4.9787 41 1 7.0976 -2.7571 5.0351 42 1 9.5338 -5.2221 3.9844 43 1 9.3082 -3.5191 4.4540 44 1 8.3706 -4.8535 1.8720 45 1 9.6208 -3.5939 2.0381 46 1 9.6766 -2.9210 -0.7413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484598593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:43 Heat of formation + Delta-G solvation = -48.106184 kcal Electronic energy + Delta-G solvation = -29902.177165 eV Core-core repulsion = 25793.637390 eV Total energy + Delta-G solvation = -4108.539775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80420 -39.12673 -38.27524 -38.06074 -35.27578 -33.50262 -33.04943 -31.63324 -31.28877 -30.40234 -28.36571 -27.54801 -27.11193 -25.19814 -23.41918 -22.91610 -22.57049 -21.54872 -19.83958 -19.52741 -18.17584 -17.17927 -17.07712 -16.36969 -16.21217 -15.82918 -15.76074 -15.53216 -14.77532 -14.66379 -14.50882 -14.29712 -13.94967 -13.92359 -13.77305 -13.56981 -13.21961 -13.03516 -12.75559 -12.51981 -12.31838 -12.05042 -11.59680 -11.56963 -11.49486 -11.35185 -10.97761 -10.85074 -10.68351 -10.37139 -10.17670 -10.01965 -9.81617 -9.63190 -9.51989 -9.33027 -8.93390 -8.63258 -8.33079 -8.18541 -6.69014 -5.86999 -3.37279 1.09959 1.26640 3.07874 3.29292 3.33193 3.42940 3.49307 3.62233 4.03842 4.37254 4.41649 4.56595 4.57539 4.63187 4.86791 4.93752 5.03594 5.17976 5.20225 5.28141 5.30849 5.37106 5.57447 5.63078 5.65021 5.76480 5.89120 5.94245 5.95374 6.05807 6.10370 6.15020 6.18782 6.28154 6.36237 6.41346 6.55448 6.80200 7.10527 7.12264 7.19553 7.51850 7.75986 7.89226 8.05788 8.29244 8.34063 8.92357 9.09899 9.69722 10.28681 11.19462 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.003729 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.746503 B = 7506.042228 C = 8848.664072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.090 3.910 4 C -0.167 4.167 5 C -0.140 4.140 6 C 0.063 3.937 7 N -0.437 5.437 8 C 0.139 3.861 9 C -0.090 4.090 10 C 0.522 3.478 11 O -0.560 6.560 12 N -0.694 5.694 13 C 0.138 3.862 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.056 3.944 17 O -0.393 6.393 18 C 0.034 3.966 19 C 0.144 3.856 20 N -0.592 5.592 21 C -0.254 4.254 22 H 0.075 0.925 23 C 0.010 3.990 24 N -0.901 5.901 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.289 1.289 28 H -0.287 1.287 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.415 0.585 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.029 0.971 45 H 0.093 0.907 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.787 5.513 -0.767 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.042 3.958 4 C -0.193 4.193 5 C -0.160 4.160 6 C -0.093 4.093 7 N -0.146 5.146 8 C -0.001 4.001 9 C -0.131 4.131 10 C 0.307 3.693 11 O -0.440 6.440 12 N -0.346 5.346 13 C 0.014 3.986 14 C 0.018 3.982 15 H 0.059 0.941 16 C -0.023 4.023 17 O -0.312 6.312 18 C -0.044 4.044 19 C 0.019 3.981 20 N -0.317 5.317 21 C -0.383 4.383 22 H 0.093 0.907 23 C -0.189 4.189 24 N -0.545 5.545 25 Si 0.722 3.278 26 H -0.197 1.197 27 H -0.216 1.216 28 H -0.213 1.213 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.253 0.747 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.111 0.889 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.034 5.594 -0.200 15.109 hybrid contribution -0.526 1.041 -0.951 1.505 sum -14.560 6.635 -1.151 16.042 Atomic orbital electron populations 1.23085 0.78475 1.04223 1.01114 1.86128 1.21243 1.25942 1.88317 1.19836 0.93071 0.85112 0.97789 1.21600 1.00477 0.92161 1.05055 1.21924 0.95747 0.98054 1.00277 1.22605 0.91372 0.96366 0.99005 1.67507 1.39994 0.97536 1.09566 1.20041 0.87685 0.93506 0.98887 1.20463 1.01758 0.94065 0.96786 1.20053 0.78256 0.80819 0.90191 1.90637 1.53187 1.53913 1.46232 1.45937 1.52278 1.26743 1.09646 1.21123 0.97552 0.96634 0.83325 1.21427 0.88962 0.94623 0.93155 0.94081 1.22868 0.92584 0.90075 0.96811 1.87797 1.24485 1.36588 1.82286 1.23363 0.84295 0.99322 0.97382 1.21416 0.94995 0.91466 0.90265 1.44102 1.08825 1.18794 1.60025 1.19305 1.27741 0.86670 1.04594 0.90746 1.25143 1.01131 0.96395 0.96275 1.69986 1.37363 1.23755 1.23360 0.86353 0.78392 0.83784 0.79317 1.19732 1.21559 1.21342 0.87959 0.92659 0.92763 0.84520 0.84730 0.82596 0.86854 0.87189 0.74663 0.92504 0.91651 0.89975 0.93540 0.90280 0.94149 0.95291 0.88904 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.83 101.05 0.99 1.21 16 2 O -0.30 -4.03 9.54 -19.47 -0.19 -4.22 16 3 C 0.09 1.30 6.67 -39.07 -0.26 1.04 16 4 C -0.17 -1.93 9.14 -39.14 -0.36 -2.29 16 5 C -0.14 -1.54 10.11 -39.46 -0.40 -1.94 16 6 C 0.06 0.85 11.18 -17.54 -0.20 0.65 16 7 N -0.44 -7.49 10.27 -9.35 -0.10 -7.59 16 8 C 0.14 2.35 5.29 -82.41 -0.44 1.91 16 9 C -0.09 -1.53 5.78 -29.04 -0.17 -1.69 16 10 C 0.52 10.25 7.82 -10.99 -0.09 10.16 16 11 O -0.56 -12.59 16.03 5.55 0.09 -12.50 16 12 N -0.69 -13.46 3.78 -60.29 -0.23 -13.69 16 13 C 0.14 2.64 4.45 -4.04 -0.02 2.62 16 14 C 0.13 2.48 3.21 -67.42 -0.22 2.27 16 15 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 16 C 0.06 1.00 6.29 37.31 0.23 1.24 16 17 O -0.39 -7.73 10.74 -35.23 -0.38 -8.11 16 18 C 0.03 0.67 6.99 37.31 0.26 0.93 16 19 C 0.14 3.29 5.38 -3.53 -0.02 3.27 16 20 N -0.59 -13.74 3.03 -164.30 -0.50 -14.24 16 21 C -0.25 -6.34 7.04 -15.06 -0.11 -6.44 16 22 H 0.07 1.92 5.82 -52.49 -0.31 1.62 16 23 C 0.01 0.26 5.08 -17.43 -0.09 0.17 16 24 N -0.90 -24.29 11.11 55.49 0.62 -23.67 16 25 Si 0.89 21.09 29.56 -169.99 -5.03 16.06 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.42 7.69 -51.93 -0.40 0.02 16 31 H 0.05 0.35 7.71 -51.93 -0.40 -0.05 16 32 H 0.14 1.14 6.45 -52.49 -0.34 0.80 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 34 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 36 H 0.11 1.59 7.51 -51.93 -0.39 1.20 16 37 H 0.42 8.27 7.31 -40.82 -0.30 7.97 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.37 7.56 -51.93 -0.39 0.98 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.34 6.32 -51.93 -0.33 2.01 16 46 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -32.46 373.71 -7.57 -40.03 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.64 Total: 9.19 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.86 Total: 13.10 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.21 Total: -59.18 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.48 Total: -24.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.46 -7.57 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484598593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.076 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds