Wall clock time and date at job start Tue Mar 31 2020 19:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35913 * 117.00197 * 2 1 4 4 C 1.39138 * 120.47391 * 0.24959 * 3 2 1 5 5 C 1.38531 * 118.37599 * 180.26575 * 4 3 2 6 6 C 1.38261 * 119.22042 * 359.74860 * 5 4 3 7 7 N 1.31843 * 120.88634 * 359.97438 * 6 5 4 8 8 C 1.31844 * 121.78185 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65842 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47597 * 89.99652 * 9 8 7 11 11 O 1.21290 * 119.99644 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00294 * 179.97438 * 10 9 8 13 13 C 1.46509 * 120.00099 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46781 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.71117 * 299.94417 * 14 13 12 16 16 C 1.53296 * 109.67734 * 179.40343 * 14 13 12 17 17 O 1.42964 * 109.22056 * 187.97558 * 16 14 13 18 18 C 1.42966 * 114.16788 * 62.58518 * 17 16 14 19 19 C 1.53299 * 109.21970 * 297.41580 * 18 17 16 20 20 N 1.47152 * 108.38366 * 52.30441 * 19 18 17 21 21 C 1.36941 * 120.98422 * 129.18934 * 20 19 18 22 22 H 1.07998 * 119.99927 * 211.62045 * 21 20 19 23 23 C 1.38813 * 119.99706 * 31.61580 * 21 20 19 24 24 N 1.31621 * 119.99866 * 9.82701 * 23 21 20 25 25 Si 1.86797 * 119.99646 * 189.82423 * 23 21 20 26 26 H 1.48497 * 109.47223 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46918 * 120.00609 * 25 23 21 28 28 H 1.48508 * 109.46969 * 240.00051 * 25 23 21 29 29 H 1.09003 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47258 * 299.99804 * 1 2 3 31 31 H 1.08996 * 109.47209 * 60.00228 * 1 2 3 32 32 H 1.07999 * 120.81270 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.39431 * 179.73037 * 5 4 3 34 34 H 1.08000 * 119.55307 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46799 * 329.99002 * 9 8 7 36 36 H 1.09006 * 109.46774 * 209.99963 * 9 8 7 37 37 H 0.97003 * 120.00056 * 0.02562 * 12 10 9 38 38 H 1.08994 * 109.46923 * 60.00334 * 13 12 10 39 39 H 1.09001 * 109.46896 * 300.00004 * 13 12 10 40 40 H 1.08995 * 109.51152 * 68.05561 * 16 14 13 41 41 H 1.08997 * 109.55656 * 307.92367 * 16 14 13 42 42 H 1.09001 * 109.51259 * 177.49712 * 18 17 16 43 43 H 1.08996 * 109.51102 * 57.34113 * 18 17 16 44 44 H 1.08990 * 109.68472 * 292.57832 * 19 18 17 45 45 H 1.08996 * 109.67908 * 172.02025 * 19 18 17 46 46 H 0.96999 * 119.99782 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 0.0052 5 6 1.9716 3.5946 -0.0007 6 6 3.3542 3.5975 -0.0061 7 7 4.0334 2.4675 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0330 0.0003 10 6 4.5346 -0.3839 1.4210 11 8 4.1079 0.2788 2.3429 12 7 5.2593 -1.4932 1.6673 13 6 5.5323 -1.8982 3.0486 14 6 6.3684 -3.1795 3.0485 15 1 5.8225 -3.9747 2.5410 16 6 6.6695 -3.5994 4.4917 17 8 7.6008 -4.6841 4.4817 18 6 8.8718 -4.3591 3.9135 19 6 8.6835 -3.9780 2.4406 20 7 7.6460 -2.9376 2.3594 21 6 7.8650 -1.7761 1.6678 22 1 7.3974 -0.8582 1.9921 23 6 8.6881 -1.7786 0.5500 24 7 9.1018 -2.9193 0.0400 25 14 9.2085 -0.1631 -0.2301 26 1 8.6135 0.9669 0.5276 27 1 10.6891 -0.0534 -0.2004 28 1 8.7370 -0.1187 -1.6377 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2185 2.3519 0.0098 33 1 1.4234 4.5251 -0.0012 34 1 3.8849 4.5381 -0.0111 35 1 5.1960 0.2138 -0.5179 36 1 3.7054 -0.7591 -0.5093 37 1 5.6009 -2.0230 0.9300 38 1 4.5907 -2.0784 3.5672 39 1 6.0817 -1.1062 3.5575 40 1 5.7472 -3.9160 4.9787 41 1 7.0976 -2.7571 5.0351 42 1 9.5338 -5.2221 3.9844 43 1 9.3082 -3.5191 4.4540 44 1 8.3706 -4.8535 1.8720 45 1 9.6208 -3.5939 2.0381 46 1 9.6766 -2.9210 -0.7413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484598593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:43 Heat of formation + Delta-G solvation = -71.358214 kcal Electronic energy + Delta-G solvation = -29903.185449 eV Core-core repulsion = 25793.637390 eV Total energy + Delta-G solvation = -4109.548058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83078 -40.67797 -39.79135 -39.06690 -36.93755 -35.27418 -34.18013 -33.25379 -32.46495 -32.07284 -29.55668 -28.89539 -28.29450 -26.71588 -25.23149 -23.84644 -23.81314 -23.06448 -21.47151 -21.14851 -19.09292 -18.77085 -18.17413 -17.82088 -17.63101 -17.43517 -16.96981 -16.68502 -16.26909 -16.21219 -16.12664 -15.56088 -15.43047 -15.26667 -15.03349 -14.80864 -14.69389 -14.40070 -14.17702 -13.98560 -13.66993 -13.17833 -13.16107 -12.95003 -12.77694 -12.73163 -12.47493 -12.33950 -12.29797 -12.11192 -11.99531 -11.85746 -11.30489 -11.04448 -10.72064 -10.58292 -10.55742 -10.51663 -9.83928 -9.33105 -8.60258 -7.86654 -5.37603 0.10898 0.31047 1.39827 1.47017 1.55569 1.74164 2.24877 2.31748 2.46545 2.86104 3.04437 3.29876 3.32342 3.45473 3.63608 3.82286 3.98339 4.04848 4.08782 4.22075 4.27185 4.34746 4.36208 4.38532 4.47430 4.48149 4.49038 4.60660 4.64786 4.66716 4.70584 4.74136 4.81468 5.01330 5.04097 5.10484 5.12723 5.31736 5.51191 5.58918 5.65859 5.71276 6.25307 6.30171 6.38817 6.71147 7.04143 7.12605 7.35018 7.77369 8.33248 9.17803 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.003729 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.746503 B = 7506.042228 C = 8848.664072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.081 3.919 4 C -0.164 4.164 5 C -0.124 4.124 6 C 0.044 3.956 7 N -0.480 5.480 8 C 0.098 3.902 9 C -0.084 4.084 10 C 0.521 3.479 11 O -0.589 6.589 12 N -0.695 5.695 13 C 0.144 3.856 14 C 0.127 3.873 15 H 0.040 0.960 16 C 0.058 3.942 17 O -0.396 6.396 18 C 0.046 3.954 19 C 0.149 3.851 20 N -0.606 5.606 21 C -0.239 4.239 22 H 0.065 0.935 23 C -0.027 4.027 24 N -0.924 5.924 25 Si 0.939 3.061 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.412 0.588 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.008 0.992 45 H 0.066 0.934 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.178 6.279 -0.163 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.033 3.967 4 C -0.190 4.190 5 C -0.143 4.143 6 C -0.113 4.113 7 N -0.190 5.190 8 C -0.042 4.042 9 C -0.124 4.124 10 C 0.308 3.692 11 O -0.471 6.471 12 N -0.346 5.346 13 C 0.020 3.980 14 C 0.021 3.979 15 H 0.058 0.942 16 C -0.021 4.021 17 O -0.315 6.315 18 C -0.032 4.032 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.369 4.369 22 H 0.082 0.918 23 C -0.224 4.224 24 N -0.570 5.570 25 Si 0.769 3.231 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.213 1.213 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.191 0.809 33 H 0.196 0.804 34 H 0.195 0.805 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.249 0.751 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.065 0.935 42 H 0.123 0.877 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.439 6.338 0.415 17.623 hybrid contribution 0.090 0.851 -1.105 1.397 sum -16.349 7.189 -0.690 17.873 Atomic orbital electron populations 1.23423 0.76031 1.05879 1.02511 1.86088 1.23819 1.25810 1.88223 1.19910 0.92608 0.86526 0.97646 1.22072 1.02222 0.91241 1.03472 1.22395 0.94917 0.99682 0.97346 1.23140 0.92989 0.96117 0.99028 1.67397 1.41873 0.98687 1.11037 1.19988 0.88992 0.93132 1.02042 1.20399 1.01781 0.95535 0.94708 1.20520 0.77422 0.80141 0.91131 1.90599 1.54412 1.54699 1.47410 1.45977 1.52134 1.26798 1.09658 1.21077 0.98112 0.95521 0.83285 1.21551 0.87465 0.94815 0.94081 0.94203 1.22982 0.93765 0.89980 0.95373 1.87803 1.24553 1.37232 1.81910 1.23229 0.84902 1.00536 0.94561 1.21248 0.93639 0.90333 0.92403 1.44298 1.10448 1.18308 1.60146 1.19260 1.26572 0.87051 1.04044 0.91757 1.25541 1.01931 0.97935 0.97021 1.70085 1.38363 1.24767 1.23794 0.85630 0.77543 0.81335 0.78558 1.20739 1.21911 1.21271 0.86381 0.91792 0.90665 0.80897 0.80398 0.80468 0.87983 0.85464 0.75060 0.90365 0.93695 0.86398 0.93464 0.87666 0.93965 0.97352 0.91544 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.83 113.37 1.11 1.34 16 2 O -0.33 -8.28 9.54 -92.57 -0.88 -9.17 16 3 C 0.08 2.27 6.67 22.60 0.15 2.42 16 4 C -0.16 -3.34 9.14 22.56 0.21 -3.13 16 5 C -0.12 -2.35 10.11 22.35 0.23 -2.12 16 6 C 0.04 1.13 11.18 84.70 0.95 2.08 16 7 N -0.48 -16.66 10.27 -183.50 -1.88 -18.55 16 8 C 0.10 3.32 5.29 42.67 0.23 3.55 16 9 C -0.08 -2.94 5.78 29.10 0.17 -2.77 16 10 C 0.52 20.94 7.82 87.66 0.69 21.63 16 11 O -0.59 -26.97 16.03 -3.06 -0.05 -27.02 16 12 N -0.70 -27.39 3.78 -463.05 -1.75 -29.14 16 13 C 0.14 5.48 4.45 86.38 0.38 5.86 16 14 C 0.13 4.95 3.21 44.96 0.14 5.09 16 15 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 16 C 0.06 1.95 6.29 72.08 0.45 2.40 16 17 O -0.40 -14.75 10.74 -148.98 -1.60 -16.35 16 18 C 0.05 1.71 6.99 72.08 0.50 2.22 16 19 C 0.15 6.88 5.38 86.36 0.46 7.34 16 20 N -0.61 -28.33 3.03 -673.72 -2.04 -30.37 16 21 C -0.24 -12.16 7.04 84.03 0.59 -11.57 16 22 H 0.06 3.41 5.82 -2.91 -0.02 3.39 16 23 C -0.03 -1.45 5.08 84.86 0.43 -1.02 16 24 N -0.92 -51.01 11.11 21.65 0.24 -50.77 16 25 Si 0.94 44.60 29.56 68.60 2.03 46.63 16 26 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 0.79 7.69 -2.39 -0.02 0.77 16 31 H 0.07 0.74 7.71 -2.39 -0.02 0.72 16 32 H 0.17 2.12 6.45 -2.91 -0.02 2.10 16 33 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 36 H 0.13 3.80 7.51 -2.38 -0.02 3.79 16 37 H 0.41 16.82 7.31 -92.71 -0.68 16.14 16 38 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.04 1.89 7.56 -2.39 -0.02 1.88 16 40 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 45 H 0.07 3.42 6.32 -2.39 -0.02 3.40 16 46 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -72.13 373.71 1.08 -71.04 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.33 Total: 30.37 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 6.70 Total: 33.32 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.44 Total: -128.83 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -2.53 Total: -52.53 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.13 1.08 -71.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484598593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.315 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds