Wall clock time and date at job start Tue Mar 31 2020 18:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34671 * 119.70333 * 2 1 4 4 O 1.21961 * 119.95727 * 0.04148 * 3 2 1 5 5 C 1.41244 * 120.08344 * 180.29372 * 3 2 1 6 6 C 1.36104 * 119.50931 * 359.72686 * 5 3 2 7 7 C 1.40408 * 119.42036 * 359.97438 * 6 5 3 8 8 C 1.36300 * 119.90035 * 0.02562 * 7 6 5 9 9 C 1.47887 * 119.75065 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99544 * 268.22100 * 9 8 7 11 11 N 1.34773 * 120.00218 * 88.22352 * 9 8 7 12 12 C 1.46924 * 120.62977 * 354.99441 * 11 9 8 13 13 C 1.53187 * 108.77779 * 233.58737 * 12 11 9 14 14 C 1.53039 * 109.31211 * 305.36571 * 13 12 11 15 15 C 1.53039 * 109.53930 * 61.36271 * 14 13 12 16 16 C 1.52994 * 109.50105 * 178.68027 * 15 14 13 17 17 O 1.42898 * 109.47461 * 184.84227 * 16 15 14 18 18 N 1.46507 * 109.51896 * 58.60412 * 15 14 13 19 19 C 1.36940 * 119.99316 * 180.14733 * 18 15 14 20 20 H 1.07991 * 120.00405 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99308 * 179.97438 * 19 18 15 22 22 N 1.31615 * 120.00583 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99696 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47200 * 60.00077 * 23 21 19 25 25 H 1.48501 * 109.47341 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47274 * 300.00161 * 23 21 19 27 27 C 1.46919 * 120.63359 * 174.97348 * 11 9 8 28 28 H 1.08999 * 109.47443 * 274.76311 * 1 2 3 29 29 H 1.09001 * 109.47121 * 34.76027 * 1 2 3 30 30 H 1.08999 * 109.47207 * 154.75837 * 1 2 3 31 31 H 1.08001 * 120.24013 * 179.70164 * 5 3 2 32 32 H 1.07996 * 120.28868 * 179.97438 * 6 5 3 33 33 H 1.07999 * 120.04640 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.58909 * 113.79902 * 12 11 9 35 35 H 1.08999 * 109.70430 * 353.44399 * 12 11 9 36 36 H 1.09006 * 109.49933 * 65.31892 * 13 12 11 37 37 H 1.09001 * 109.49984 * 185.41379 * 13 12 11 38 38 H 1.08998 * 109.45804 * 181.38620 * 14 13 12 39 39 H 1.09000 * 109.46243 * 301.34527 * 14 13 12 40 40 H 1.09000 * 109.47618 * 304.84524 * 16 15 14 41 41 H 1.09009 * 109.46769 * 64.83878 * 16 15 14 42 42 H 0.96703 * 113.99986 * 180.02562 * 17 16 15 43 43 H 0.96997 * 120.00608 * 0.14349 * 18 15 14 44 44 H 0.97000 * 120.00588 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.59266 * 246.20488 * 27 11 9 46 46 H 1.09005 * 109.58671 * 6.48147 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1698 0.0000 4 8 1.5163 2.2223 0.0008 5 6 3.5447 1.1791 -0.0063 6 6 4.2230 -0.0009 -0.0066 7 6 3.5064 -1.2083 -0.0002 8 6 2.1435 -1.1895 0.0057 9 6 1.3921 -2.4632 0.0119 10 8 1.0505 -2.9723 -1.0376 11 7 1.0860 -3.0594 1.1812 12 6 1.5847 -2.5157 2.4518 13 6 2.3062 -3.6304 3.2157 14 6 1.3663 -4.8283 3.3704 15 6 0.9833 -5.3602 1.9875 16 6 0.0702 -6.5778 2.1436 17 8 -0.1959 -7.1417 0.8578 18 7 2.1942 -5.7473 1.2592 19 6 2.0977 -6.2516 -0.0103 20 1 1.1291 -6.3644 -0.4744 21 6 3.2450 -6.6179 -0.7005 22 7 4.4255 -6.4809 -0.1347 23 14 3.1135 -7.3065 -2.4319 24 1 2.4679 -6.3031 -3.3160 25 1 4.4717 -7.6182 -2.9452 26 1 2.2963 -8.5462 -2.4109 27 6 0.2469 -4.2651 1.2096 28 1 -0.3634 0.0853 1.0241 29 1 -0.3633 0.8443 -0.5859 30 1 -0.3633 -0.9295 -0.4382 31 1 4.0824 2.1158 -0.0111 32 1 5.3029 -0.0084 -0.0118 33 1 4.0343 -2.1504 0.0000 34 1 0.7478 -2.1483 3.0456 35 1 2.2792 -1.6991 2.2547 36 1 3.1949 -3.9343 2.6626 37 1 2.5971 -3.2667 4.2012 38 1 1.8689 -5.6135 3.9351 39 1 0.4668 -4.5179 3.9020 40 1 0.5602 -7.3214 2.7721 41 1 -0.8677 -6.2716 2.6072 42 1 -0.7705 -7.9192 0.8805 43 1 3.0641 -5.6463 1.6762 44 1 5.2272 -6.7372 -0.6169 45 1 -0.6992 -4.0404 1.7021 46 1 0.0572 -4.6024 0.1906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484849568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:46 Heat of formation + Delta-G solvation = -48.719116 kcal Electronic energy + Delta-G solvation = -31344.268468 eV Core-core repulsion = 27235.702114 eV Total energy + Delta-G solvation = -4108.566353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52695 -39.82703 -38.02441 -36.61435 -35.86723 -34.63333 -33.89839 -32.38599 -31.22836 -30.25153 -28.64658 -27.70206 -26.11918 -25.45158 -23.91846 -23.52894 -22.64625 -21.83668 -20.14232 -18.53041 -17.78725 -17.36125 -17.28431 -16.89457 -16.34564 -16.24093 -15.68171 -15.42840 -14.95171 -14.64135 -14.46380 -14.30984 -13.93035 -13.61159 -13.43323 -13.29029 -13.18326 -13.00493 -12.72470 -12.44512 -12.38003 -12.13643 -11.96748 -11.77100 -11.72181 -11.26059 -10.88914 -10.74257 -10.70314 -10.56181 -10.29253 -10.27185 -10.13042 -9.80322 -9.61860 -9.52629 -9.05066 -8.87226 -8.29098 -8.01206 -6.87607 -5.61511 -2.87341 0.65331 1.79147 2.23082 2.85062 3.23382 3.57164 3.57796 3.59937 3.65357 4.26998 4.56559 4.67966 4.75208 4.86197 4.97699 5.06659 5.14358 5.15269 5.20457 5.31086 5.34012 5.41601 5.47030 5.50894 5.57842 5.68002 5.78341 5.82478 5.85587 5.91720 5.99015 6.03364 6.08794 6.16332 6.22738 6.25131 6.39298 6.47215 6.66750 6.71928 6.85992 6.97481 7.57015 7.95115 8.12256 8.28594 8.32265 8.56230 9.70228 10.16076 10.52084 11.61804 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.004825 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.677757 B = 5801.693693 C = 6706.572727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.484 5.484 3 C 0.516 3.484 4 O -0.557 6.557 5 C -0.239 4.239 6 C -0.012 4.012 7 C -0.187 4.187 8 C 0.136 3.864 9 C 0.561 3.439 10 O -0.498 6.498 11 N -0.578 5.578 12 C 0.108 3.892 13 C -0.130 4.130 14 C -0.116 4.116 15 C 0.189 3.811 16 C 0.075 3.925 17 O -0.536 6.536 18 N -0.702 5.702 19 C -0.197 4.197 20 H 0.091 0.909 21 C -0.021 4.021 22 N -0.947 5.947 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.290 1.290 27 C 0.108 3.892 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.023 0.977 42 H 0.352 0.648 43 H 0.382 0.618 44 H 0.250 0.750 45 H 0.051 0.949 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 8.994 9.344 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.198 5.198 3 C 0.318 3.682 4 O -0.440 6.440 5 C -0.260 4.260 6 C -0.034 4.034 7 C -0.210 4.210 8 C 0.026 3.974 9 C 0.344 3.656 10 O -0.371 6.371 11 N -0.310 5.310 12 C -0.016 4.016 13 C -0.168 4.168 14 C -0.154 4.154 15 C 0.095 3.905 16 C -0.006 4.006 17 O -0.339 6.339 18 N -0.342 5.342 19 C -0.328 4.328 20 H 0.109 0.891 21 C -0.214 4.214 22 N -0.597 5.597 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.217 1.217 27 C -0.016 4.016 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.197 0.803 43 H 0.217 0.783 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.215 9.805 8.390 14.323 hybrid contribution 0.139 -1.021 -0.573 1.179 sum -6.076 8.784 7.817 13.236 Atomic orbital electron populations 1.22191 0.77130 1.05109 1.03968 1.45484 1.09124 1.05495 1.59675 1.17285 0.89314 0.82284 0.79333 1.90912 1.70082 1.29190 1.53854 1.22258 0.92493 1.00110 1.11178 1.21448 1.01051 0.91315 0.89600 1.20963 0.90895 1.00700 1.08486 1.20520 0.93399 0.86076 0.97422 1.17733 0.79775 0.83351 0.84758 1.90906 1.51715 1.63840 1.30678 1.47735 1.50433 1.27928 1.04886 1.21722 0.98265 0.96612 0.84966 1.21846 0.99908 0.95108 0.99979 1.21636 0.99245 0.97868 0.96649 1.19931 0.89143 0.90798 0.90639 1.22737 0.96172 0.96160 0.85553 1.86961 1.71352 1.47448 1.28112 1.42411 1.01685 1.74869 1.15228 1.19441 0.93170 1.30457 0.89774 0.89137 1.24632 0.95439 1.03212 0.98163 1.69634 0.96730 1.55941 1.37425 0.86336 0.75857 0.78888 0.85606 1.21401 1.22322 1.21677 1.22290 0.90636 0.83890 1.04786 0.90459 0.88697 0.89463 0.83228 0.84040 0.82469 0.91687 0.90502 0.89770 0.91155 0.91254 0.91912 0.94261 0.95846 0.80306 0.78318 0.94060 0.93064 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 9.97 59.85 0.60 1.31 16 2 N -0.48 -7.02 3.02 -122.80 -0.37 -7.39 16 3 C 0.52 7.87 7.43 -15.17 -0.11 7.76 16 4 O -0.56 -9.94 16.72 4.95 0.08 -9.86 16 5 C -0.24 -3.00 10.00 -39.21 -0.39 -3.39 16 6 C -0.01 -0.14 10.08 -39.53 -0.40 -0.54 16 7 C -0.19 -2.66 9.23 -39.46 -0.36 -3.03 16 8 C 0.14 2.10 4.60 -82.33 -0.38 1.72 16 9 C 0.56 10.04 5.31 -12.31 -0.07 9.98 16 10 O -0.50 -11.16 16.37 5.33 0.09 -11.07 16 11 N -0.58 -9.12 2.89 -173.88 -0.50 -9.62 16 12 C 0.11 1.32 6.31 -3.71 -0.02 1.30 16 13 C -0.13 -1.64 5.91 -26.61 -0.16 -1.79 16 14 C -0.12 -1.53 4.76 -26.69 -0.13 -1.66 16 15 C 0.19 3.22 0.68 -131.70 -0.09 3.13 16 16 C 0.07 1.19 6.09 37.15 0.23 1.42 16 17 O -0.54 -9.67 10.05 -35.23 -0.35 -10.03 16 18 N -0.70 -15.71 4.75 -47.12 -0.22 -15.93 16 19 C -0.20 -5.22 8.07 -15.06 -0.12 -5.34 16 20 H 0.09 2.48 5.27 -52.49 -0.28 2.21 16 21 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 22 N -0.95 -27.83 13.06 55.49 0.72 -27.11 16 23 Si 0.90 23.48 29.55 -169.99 -5.02 18.45 16 24 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 25 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 C 0.11 1.82 4.91 -3.72 -0.02 1.81 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.16 7.54 -51.93 -0.39 0.77 16 30 H 0.09 1.13 6.60 -51.93 -0.34 0.79 16 31 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.91 6.03 -51.93 -0.31 0.60 16 36 H 0.08 1.32 6.75 -51.93 -0.35 0.97 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.35 4.65 9.12 45.56 0.42 5.07 16 43 H 0.38 9.20 6.43 -40.82 -0.26 8.93 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.11 2.24 5.82 -51.93 -0.30 1.94 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -35.35 367.78 -7.17 -42.51 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.61 Total: 12.53 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -1.52 Total: 11.97 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.37 Total: -60.05 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.18 Total: -30.96 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.35 -7.17 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484849568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.205 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds