Wall clock time and date at job start Tue Mar 31 2020 18:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34671 * 119.70333 * 2 1 4 4 O 1.21961 * 119.95727 * 0.04148 * 3 2 1 5 5 C 1.41244 * 120.08344 * 180.29372 * 3 2 1 6 6 C 1.36104 * 119.50931 * 359.72686 * 5 3 2 7 7 C 1.40408 * 119.42036 * 359.97438 * 6 5 3 8 8 C 1.36300 * 119.90035 * 0.02562 * 7 6 5 9 9 C 1.47887 * 119.75065 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99544 * 268.22100 * 9 8 7 11 11 N 1.34773 * 120.00218 * 88.22352 * 9 8 7 12 12 C 1.46924 * 120.62977 * 354.99441 * 11 9 8 13 13 C 1.53187 * 108.77779 * 233.58737 * 12 11 9 14 14 C 1.53039 * 109.31211 * 305.36571 * 13 12 11 15 15 C 1.53039 * 109.53930 * 61.36271 * 14 13 12 16 16 C 1.52994 * 109.50105 * 178.68027 * 15 14 13 17 17 O 1.42898 * 109.47461 * 184.84227 * 16 15 14 18 18 N 1.46507 * 109.51896 * 58.60412 * 15 14 13 19 19 C 1.36940 * 119.99316 * 180.14733 * 18 15 14 20 20 H 1.07991 * 120.00405 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99308 * 179.97438 * 19 18 15 22 22 N 1.31615 * 120.00583 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99696 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47200 * 60.00077 * 23 21 19 25 25 H 1.48501 * 109.47341 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47274 * 300.00161 * 23 21 19 27 27 C 1.46919 * 120.63359 * 174.97348 * 11 9 8 28 28 H 1.08999 * 109.47443 * 274.76311 * 1 2 3 29 29 H 1.09001 * 109.47121 * 34.76027 * 1 2 3 30 30 H 1.08999 * 109.47207 * 154.75837 * 1 2 3 31 31 H 1.08001 * 120.24013 * 179.70164 * 5 3 2 32 32 H 1.07996 * 120.28868 * 179.97438 * 6 5 3 33 33 H 1.07999 * 120.04640 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.58909 * 113.79902 * 12 11 9 35 35 H 1.08999 * 109.70430 * 353.44399 * 12 11 9 36 36 H 1.09006 * 109.49933 * 65.31892 * 13 12 11 37 37 H 1.09001 * 109.49984 * 185.41379 * 13 12 11 38 38 H 1.08998 * 109.45804 * 181.38620 * 14 13 12 39 39 H 1.09000 * 109.46243 * 301.34527 * 14 13 12 40 40 H 1.09000 * 109.47618 * 304.84524 * 16 15 14 41 41 H 1.09009 * 109.46769 * 64.83878 * 16 15 14 42 42 H 0.96703 * 113.99986 * 180.02562 * 17 16 15 43 43 H 0.96997 * 120.00608 * 0.14349 * 18 15 14 44 44 H 0.97000 * 120.00588 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.59266 * 246.20488 * 27 11 9 46 46 H 1.09005 * 109.58671 * 6.48147 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1698 0.0000 4 8 1.5163 2.2223 0.0008 5 6 3.5447 1.1791 -0.0063 6 6 4.2230 -0.0009 -0.0066 7 6 3.5064 -1.2083 -0.0002 8 6 2.1435 -1.1895 0.0057 9 6 1.3921 -2.4632 0.0119 10 8 1.0505 -2.9723 -1.0376 11 7 1.0860 -3.0594 1.1812 12 6 1.5847 -2.5157 2.4518 13 6 2.3062 -3.6304 3.2157 14 6 1.3663 -4.8283 3.3704 15 6 0.9833 -5.3602 1.9875 16 6 0.0702 -6.5778 2.1436 17 8 -0.1959 -7.1417 0.8578 18 7 2.1942 -5.7473 1.2592 19 6 2.0977 -6.2516 -0.0103 20 1 1.1291 -6.3644 -0.4744 21 6 3.2450 -6.6179 -0.7005 22 7 4.4255 -6.4809 -0.1347 23 14 3.1135 -7.3065 -2.4319 24 1 2.4679 -6.3031 -3.3160 25 1 4.4717 -7.6182 -2.9452 26 1 2.2963 -8.5462 -2.4109 27 6 0.2469 -4.2651 1.2096 28 1 -0.3634 0.0853 1.0241 29 1 -0.3633 0.8443 -0.5859 30 1 -0.3633 -0.9295 -0.4382 31 1 4.0824 2.1158 -0.0111 32 1 5.3029 -0.0084 -0.0118 33 1 4.0343 -2.1504 0.0000 34 1 0.7478 -2.1483 3.0456 35 1 2.2792 -1.6991 2.2547 36 1 3.1949 -3.9343 2.6626 37 1 2.5971 -3.2667 4.2012 38 1 1.8689 -5.6135 3.9351 39 1 0.4668 -4.5179 3.9020 40 1 0.5602 -7.3214 2.7721 41 1 -0.8677 -6.2716 2.6072 42 1 -0.7705 -7.9192 0.8805 43 1 3.0641 -5.6463 1.6762 44 1 5.2272 -6.7372 -0.6169 45 1 -0.6992 -4.0404 1.7021 46 1 0.0572 -4.6024 0.1906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484849568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:45 Heat of formation + Delta-G solvation = -76.317403 kcal Electronic energy + Delta-G solvation = -31345.465219 eV Core-core repulsion = 27235.702114 eV Total energy + Delta-G solvation = -4109.763105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69750 -41.11445 -39.40166 -37.86359 -37.18787 -35.69103 -35.53238 -33.98248 -32.59515 -31.49200 -30.34074 -28.74163 -27.39493 -26.60826 -25.54732 -25.03864 -23.73627 -22.99758 -21.41556 -19.89081 -19.30155 -18.75007 -18.48988 -18.06609 -17.74480 -17.57681 -16.90817 -16.82049 -16.26746 -16.02141 -15.66615 -15.64844 -15.57544 -15.04967 -14.81326 -14.51838 -14.37741 -14.28128 -13.82771 -13.68415 -13.62998 -13.45323 -13.22268 -13.05470 -12.92246 -12.84878 -12.73269 -12.52822 -12.08533 -11.92261 -11.83414 -11.55732 -11.32929 -11.28957 -11.14916 -10.96253 -10.76380 -10.53150 -9.66406 -9.16374 -8.77893 -7.76687 -4.96664 -0.42474 0.65474 1.00343 1.43595 1.47089 1.52011 1.57271 2.02712 2.48256 2.67413 3.08948 3.43086 3.49568 3.71096 3.90070 3.91242 3.93515 4.03709 4.08741 4.15927 4.17545 4.21415 4.31115 4.35879 4.51978 4.53656 4.58464 4.64904 4.76132 4.82357 4.84615 4.91357 4.99666 5.01292 5.06527 5.15644 5.20405 5.33786 5.43643 5.52680 5.57379 5.84840 5.97915 6.27742 6.48533 6.80403 6.95637 7.19561 7.58091 8.25856 8.48960 9.47277 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.004825 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.677757 B = 5801.693693 C = 6706.572727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.482 5.482 3 C 0.505 3.495 4 O -0.589 6.589 5 C -0.233 4.233 6 C 0.001 3.999 7 C -0.183 4.183 8 C 0.125 3.875 9 C 0.557 3.443 10 O -0.559 6.559 11 N -0.573 5.573 12 C 0.103 3.897 13 C -0.126 4.126 14 C -0.110 4.110 15 C 0.175 3.825 16 C 0.074 3.926 17 O -0.572 6.572 18 N -0.708 5.708 19 C -0.161 4.161 20 H 0.081 0.919 21 C -0.085 4.085 22 N -0.975 5.975 23 Si 0.939 3.061 24 H -0.303 1.303 25 H -0.301 1.301 26 H -0.284 1.284 27 C 0.111 3.889 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.373 0.627 43 H 0.372 0.628 44 H 0.240 0.760 45 H 0.091 0.909 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 10.339 12.173 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.195 5.195 3 C 0.309 3.691 4 O -0.475 6.475 5 C -0.254 4.254 6 C -0.020 4.020 7 C -0.207 4.207 8 C 0.014 3.986 9 C 0.341 3.659 10 O -0.437 6.437 11 N -0.303 5.303 12 C -0.018 4.018 13 C -0.164 4.164 14 C -0.147 4.147 15 C 0.084 3.916 16 C -0.006 4.006 17 O -0.377 6.377 18 N -0.347 5.347 19 C -0.293 4.293 20 H 0.098 0.902 21 C -0.275 4.275 22 N -0.630 5.630 23 Si 0.773 3.227 24 H -0.231 1.231 25 H -0.228 1.228 26 H -0.211 1.211 27 C -0.013 4.013 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.192 0.808 32 H 0.197 0.803 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.221 0.779 43 H 0.206 0.794 44 H 0.049 0.951 45 H 0.109 0.891 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.069 11.129 11.288 17.357 hybrid contribution 0.241 -1.430 -1.359 1.988 sum -6.828 9.699 9.930 15.469 Atomic orbital electron populations 1.22285 0.76304 1.04481 1.05401 1.45498 1.09780 1.05001 1.59202 1.17734 0.90338 0.81839 0.79178 1.90896 1.70849 1.30042 1.55721 1.22488 0.91245 1.01448 1.10207 1.21690 1.02669 0.89527 0.88099 1.21020 0.90625 1.01328 1.07683 1.20197 0.93528 0.85362 0.99478 1.18119 0.79212 0.84007 0.84514 1.90871 1.54336 1.65695 1.32789 1.47892 1.49459 1.27198 1.05724 1.22040 0.99767 0.96579 0.83433 1.21818 0.98263 0.94976 1.01323 1.21649 1.01097 0.97950 0.94030 1.20426 0.87370 0.91467 0.92375 1.22728 0.97785 0.95296 0.84812 1.86858 1.72308 1.48799 1.29773 1.42517 1.03372 1.74615 1.14225 1.19532 0.92119 1.26780 0.90905 0.90175 1.25078 0.95909 1.06131 1.00367 1.69725 0.96642 1.58688 1.37896 0.85685 0.75235 0.78235 0.83521 1.23135 1.22759 1.21113 1.22160 0.92464 0.84269 1.02362 0.88048 0.88744 0.90506 0.80838 0.80287 0.84109 0.87882 0.90091 0.93566 0.87403 0.91235 0.87837 0.94456 0.91539 0.77926 0.79447 0.95142 0.89134 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.36 9.97 127.77 1.27 2.64 16 2 N -0.48 -13.55 3.02 -660.59 -1.99 -15.55 16 3 C 0.51 14.70 7.43 85.00 0.63 15.33 16 4 O -0.59 -20.38 16.72 -5.19 -0.09 -20.46 16 5 C -0.23 -5.25 10.00 22.51 0.23 -5.03 16 6 C 0.00 0.03 10.08 22.30 0.22 0.25 16 7 C -0.18 -5.08 9.23 22.35 0.21 -4.87 16 8 C 0.12 3.80 4.60 40.45 0.19 3.98 16 9 C 0.56 20.21 5.31 86.80 0.46 20.67 16 10 O -0.56 -26.30 16.37 -3.84 -0.06 -26.36 16 11 N -0.57 -17.36 2.89 -822.32 -2.38 -19.74 16 12 C 0.10 2.20 6.31 86.36 0.55 2.75 16 13 C -0.13 -2.75 5.91 30.67 0.18 -2.57 16 14 C -0.11 -2.47 4.76 30.62 0.15 -2.32 16 15 C 0.18 5.63 0.68 3.68 0.00 5.63 16 16 C 0.07 2.16 6.09 71.98 0.44 2.59 16 17 O -0.57 -20.10 10.05 -148.98 -1.50 -21.60 16 18 N -0.71 -31.84 4.75 -303.00 -1.44 -33.28 16 19 C -0.16 -8.69 8.07 84.03 0.68 -8.01 16 20 H 0.08 4.52 5.27 -2.92 -0.02 4.51 16 21 C -0.09 -4.98 5.50 84.86 0.47 -4.51 16 22 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 23 Si 0.94 49.99 29.55 68.60 2.03 52.02 16 24 H -0.30 -16.68 7.11 99.48 0.71 -15.97 16 25 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 26 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 27 C 0.11 3.60 4.91 86.36 0.42 4.02 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.09 2.28 7.54 -2.39 -0.02 2.27 16 30 H 0.08 2.02 6.60 -2.39 -0.02 2.01 16 31 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.70 6.03 -2.39 -0.01 1.69 16 36 H 0.05 1.39 6.75 -2.38 -0.02 1.38 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.37 9.41 9.12 -74.06 -0.68 8.73 16 43 H 0.37 18.17 6.43 -92.71 -0.60 17.58 16 44 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.06 2.51 5.82 -2.38 -0.01 2.50 16 Total: -1.00 -82.20 367.78 0.71 -81.49 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.24 Total: 31.83 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 6.09 Total: 30.56 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -5.53 Total: -127.48 kcal Atomic # 8 Polarization: -66.78 SS G_CDS: -1.65 Total: -68.42 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.03 Total: 52.02 kcal Total: -82.20 0.71 -81.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484849568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.173 kcal (2) G-P(sol) polarization free energy of solvation -82.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds