Wall clock time and date at job start Tue Mar 31 2020 19:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35494 * 117.00317 * 2 1 4 4 C 1.39172 * 119.52965 * 179.97438 * 3 2 1 5 5 C 1.37948 * 119.26337 * 180.02562 * 4 3 2 6 6 C 1.40281 * 118.35953 * 359.74909 * 5 4 3 7 7 C 1.47616 * 120.49938 * 180.26568 * 6 5 4 8 8 O 1.21584 * 120.00164 * 0.23188 * 7 6 5 9 9 N 1.34777 * 120.00397 * 180.22683 * 7 6 5 10 10 C 1.46501 * 120.00259 * 174.68384 * 9 7 6 11 11 C 1.52997 * 109.54504 * 304.14638 * 10 9 7 12 12 N 1.46502 * 109.47058 * 305.58733 * 11 10 9 13 13 C 1.36940 * 119.99563 * 175.02449 * 12 11 10 14 14 H 1.08002 * 120.00247 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99522 * 179.97438 * 13 12 11 16 16 N 1.31627 * 120.00084 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 120.00367 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47017 * 89.99505 * 17 15 13 19 19 H 1.48500 * 109.46876 * 209.99608 * 17 15 13 20 20 H 1.48502 * 109.46582 * 329.99379 * 17 15 13 21 21 C 1.53175 * 109.53994 * 183.96955 * 10 9 7 22 22 C 1.53281 * 109.06716 * 297.02817 * 21 10 9 23 23 O 1.42906 * 109.46274 * 302.44999 * 22 21 10 24 24 C 1.42902 * 114.09602 * 61.15343 * 23 22 21 25 25 C 1.53093 * 109.41686 * 298.84572 * 24 23 22 26 26 C 1.39516 * 119.00330 * 0.48906 * 6 5 4 27 27 N 1.31663 * 120.63099 * 359.49938 * 26 6 5 28 28 H 1.08996 * 109.47272 * 59.99935 * 1 2 3 29 29 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46977 * 300.00040 * 1 2 3 31 31 H 1.08001 * 120.36291 * 359.97438 * 4 3 2 32 32 H 1.08006 * 120.81863 * 179.97438 * 5 4 3 33 33 H 0.97003 * 119.99799 * 354.68716 * 9 7 6 34 34 H 1.09003 * 109.46584 * 65.58591 * 11 10 9 35 35 H 1.08998 * 109.47164 * 185.58094 * 11 10 9 36 36 H 0.96994 * 120.00362 * 355.02155 * 12 11 10 37 37 H 0.96997 * 120.00520 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.52733 * 57.02497 * 21 10 9 39 39 H 1.09004 * 109.52216 * 177.20925 * 21 10 9 40 40 H 1.08997 * 109.46020 * 182.45173 * 22 21 10 41 41 H 1.09005 * 109.46503 * 62.44898 * 22 21 10 42 42 H 1.09000 * 109.47925 * 178.85963 * 24 23 22 43 43 H 1.09004 * 109.48984 * 58.83312 * 24 23 22 44 44 H 1.09001 * 109.52098 * 297.70238 * 25 24 23 45 45 H 1.09002 * 109.57333 * 177.54902 * 25 24 23 46 46 H 1.08008 * 119.68558 * 179.77966 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0551 2.5006 0.0011 6 6 3.2525 3.6510 -0.0044 7 6 3.8669 4.9932 -0.0099 8 8 5.0773 5.1077 -0.0141 9 7 3.0862 6.0918 -0.0105 10 6 3.6920 7.4210 0.1015 11 6 4.5517 7.4869 1.3654 12 7 3.7444 7.1021 2.5258 13 6 4.3289 6.9877 3.7588 14 1 5.3851 7.1807 3.8758 15 6 3.5639 6.6238 4.8584 16 7 4.1257 6.5133 6.0436 17 14 1.7372 6.2893 4.6559 18 1 1.5284 4.8519 4.3472 19 1 1.0286 6.6332 5.9148 20 1 1.2027 7.1171 3.5449 21 6 2.5895 8.4819 0.1760 22 6 1.7843 8.4595 -1.1281 23 8 2.6614 8.6865 -2.2333 24 6 3.6841 7.6991 -2.3789 25 6 4.5656 7.6911 -1.1273 26 6 1.8647 3.5076 0.0004 27 7 1.3138 2.3118 -0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0210 0.3617 0.0014 32 1 5.1325 2.5774 0.0019 33 1 2.1232 6.0024 -0.0850 34 1 5.3952 6.8035 1.2669 35 1 4.9215 8.5032 1.5007 36 1 2.7959 6.9285 2.4207 37 1 3.5911 6.2593 6.8120 38 1 1.9310 8.2646 1.0170 39 1 3.0392 9.4658 0.3091 40 1 1.0254 9.2414 -1.0997 41 1 1.3018 7.4885 -1.2405 42 1 4.2938 7.9333 -3.2515 43 1 3.2267 6.7181 -2.5076 44 1 5.0552 8.6591 -1.0204 45 1 5.3200 6.9094 -1.2169 46 1 1.2362 4.3860 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484865444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:36 Heat of formation + Delta-G solvation = -56.258497 kcal Electronic energy + Delta-G solvation = -30388.982998 eV Core-core repulsion = 26280.089713 eV Total energy + Delta-G solvation = -4108.893286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10797 -40.38850 -38.68825 -37.68573 -35.91493 -33.85596 -32.68452 -32.35925 -31.20672 -30.88006 -30.38089 -27.60989 -26.88817 -24.45727 -23.78565 -23.63623 -23.14398 -21.39896 -21.10008 -19.30428 -18.72804 -17.93413 -17.77617 -17.18978 -16.27256 -16.10585 -16.03400 -15.46114 -15.14247 -14.90795 -14.66339 -14.55935 -14.41697 -14.25983 -13.65675 -13.57792 -13.39976 -13.14711 -12.91005 -12.81685 -12.54199 -12.46946 -12.10931 -12.02333 -11.77878 -11.41449 -11.30910 -11.16970 -10.93909 -10.69767 -10.42343 -10.23656 -10.11703 -10.05886 -9.67461 -9.58733 -9.43759 -8.88980 -8.81619 -8.65614 -7.19366 -5.75461 -3.09638 0.62028 1.03731 2.81161 2.91866 3.19953 3.28941 3.33756 3.40922 3.78014 3.83631 3.97339 4.56289 4.57135 4.66617 4.71128 4.83923 4.87463 4.91345 4.92660 5.00834 5.06565 5.08425 5.14717 5.31859 5.36672 5.39734 5.54430 5.58744 5.61554 5.64248 5.68942 5.86643 5.90558 5.96395 6.03365 6.13933 6.16139 6.26426 6.38830 6.73534 6.89428 6.92716 7.13958 7.52421 7.61621 8.01654 8.37058 8.43450 9.22329 9.94215 10.14354 11.43447 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.005318 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.039368 B = 5263.744542 C = 7320.798184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.337 3.663 4 C -0.195 4.195 5 C 0.019 3.981 6 C -0.216 4.216 7 C 0.578 3.422 8 O -0.521 6.521 9 N -0.716 5.716 10 C 0.172 3.828 11 C 0.147 3.853 12 N -0.749 5.749 13 C -0.235 4.235 14 H 0.090 0.910 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.881 3.119 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.158 4.158 22 C 0.061 3.939 23 O -0.383 6.383 24 C 0.065 3.935 25 C -0.162 4.162 26 C 0.175 3.825 27 N -0.543 5.543 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.391 0.609 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.357 0.643 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -6.447 -18.936 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.158 3.842 4 C -0.216 4.216 5 C -0.006 4.006 6 C -0.222 4.222 7 C 0.365 3.635 8 O -0.397 6.397 9 N -0.368 5.368 10 C 0.086 3.914 11 C 0.019 3.981 12 N -0.394 5.394 13 C -0.365 4.365 14 H 0.108 0.892 15 C -0.192 4.192 16 N -0.583 5.583 17 Si 0.712 3.288 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.196 4.196 22 C -0.016 4.016 23 O -0.302 6.302 24 C -0.011 4.011 25 C -0.201 4.201 26 C 0.018 3.982 27 N -0.267 5.267 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.226 0.774 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.190 0.810 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.029 -6.560 -18.856 21.166 hybrid contribution -1.298 -0.401 0.470 1.437 sum -8.327 -6.962 -18.386 21.351 Atomic orbital electron populations 1.22909 0.76947 1.03077 1.02746 1.86207 1.23209 1.24532 1.87169 1.20072 0.89539 0.84660 0.89921 1.21049 0.91757 0.99687 1.09091 1.21544 1.01463 0.89604 0.88033 1.20890 0.94881 0.95260 1.11167 1.17646 0.86655 0.83292 0.75904 1.90727 1.13597 1.86587 1.48815 1.45901 1.09666 1.05861 1.75412 1.20679 0.93606 0.80733 0.96371 1.21065 0.94123 0.98785 0.84103 1.42553 1.07025 1.84826 1.05012 1.19055 0.95422 1.38588 0.83398 0.89241 1.24633 0.97149 1.02014 0.95387 1.69693 1.34877 1.54890 0.98861 0.86608 0.87457 0.77980 0.76790 1.21317 1.21736 1.20595 1.22519 0.98386 1.00179 0.98497 1.22625 0.92131 1.01044 0.85805 1.87913 1.43449 1.50164 1.48694 1.22531 0.89286 0.91551 0.97772 1.22549 0.99368 1.04155 0.94043 1.22532 0.91704 0.93826 0.90159 1.67269 1.40568 0.98621 1.20234 0.92132 0.88508 0.91999 0.83347 0.82582 0.77397 0.92355 0.95183 0.81040 0.93161 0.89739 0.88946 0.88672 0.93700 0.89082 0.93472 0.90084 0.88536 0.82439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.37 101.05 1.05 1.38 16 2 O -0.30 -3.57 10.46 -18.17 -0.19 -3.76 16 3 C 0.34 4.37 7.49 -16.95 -0.13 4.24 16 4 C -0.20 -2.34 10.02 -39.34 -0.39 -2.73 16 5 C 0.02 0.25 9.70 -38.92 -0.38 -0.13 16 6 C -0.22 -3.06 5.89 -104.83 -0.62 -3.68 16 7 C 0.58 9.12 7.18 -12.43 -0.09 9.03 16 8 O -0.52 -9.62 12.72 5.29 0.07 -9.55 16 9 N -0.72 -9.98 3.70 -48.44 -0.18 -10.16 16 10 C 0.17 2.53 0.32 -131.64 -0.04 2.49 16 11 C 0.15 2.89 4.79 -4.04 -0.02 2.87 16 12 N -0.75 -17.47 5.02 -59.91 -0.30 -17.77 16 13 C -0.23 -6.70 10.47 -15.06 -0.16 -6.86 16 14 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 15 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 16 N -0.93 -29.72 13.97 55.49 0.78 -28.95 16 17 Si 0.88 22.07 27.74 -169.99 -4.71 17.36 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 21 C -0.16 -2.06 4.84 -26.50 -0.13 -2.18 16 22 C 0.06 0.66 6.67 37.30 0.25 0.91 16 23 O -0.38 -4.72 10.77 -35.23 -0.38 -5.10 16 24 C 0.07 0.75 6.68 37.21 0.25 0.99 16 25 C -0.16 -2.14 4.82 -26.59 -0.13 -2.27 16 26 C 0.18 2.26 10.70 -17.15 -0.18 2.08 16 27 N -0.54 -7.25 9.18 -12.96 -0.12 -7.37 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.10 -51.92 -0.42 0.16 16 31 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.16 1.92 7.73 -52.48 -0.41 1.52 16 33 H 0.39 4.49 5.47 -40.82 -0.22 4.26 16 34 H 0.06 1.29 6.25 -51.93 -0.32 0.96 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.36 7.97 4.37 -40.82 -0.18 7.79 16 37 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 38 H 0.08 1.19 7.22 -51.93 -0.37 0.81 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.42 7.01 -51.93 -0.36 0.06 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.53 7.75 -51.93 -0.40 0.12 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.41 6.26 -51.93 -0.32 1.08 16 46 H 0.16 1.61 6.42 -52.48 -0.34 1.27 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -35.14 367.70 -6.64 -41.78 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.33 Total: 11.82 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.81 Total: 6.15 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: 0.18 Total: -64.25 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.50 Total: -18.41 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.14 -6.64 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484865444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.476 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds