Wall clock time and date at job start Tue Mar 31 2020 19:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35494 * 117.00317 * 2 1 4 4 C 1.39172 * 119.52965 * 179.97438 * 3 2 1 5 5 C 1.37948 * 119.26337 * 180.02562 * 4 3 2 6 6 C 1.40281 * 118.35953 * 359.74909 * 5 4 3 7 7 C 1.47616 * 120.49938 * 180.26568 * 6 5 4 8 8 O 1.21584 * 120.00164 * 0.23188 * 7 6 5 9 9 N 1.34777 * 120.00397 * 180.22683 * 7 6 5 10 10 C 1.46501 * 120.00259 * 174.68384 * 9 7 6 11 11 C 1.52997 * 109.54504 * 304.14638 * 10 9 7 12 12 N 1.46502 * 109.47058 * 305.58733 * 11 10 9 13 13 C 1.36940 * 119.99563 * 175.02449 * 12 11 10 14 14 H 1.08002 * 120.00247 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99522 * 179.97438 * 13 12 11 16 16 N 1.31627 * 120.00084 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 120.00367 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47017 * 89.99505 * 17 15 13 19 19 H 1.48500 * 109.46876 * 209.99608 * 17 15 13 20 20 H 1.48502 * 109.46582 * 329.99379 * 17 15 13 21 21 C 1.53175 * 109.53994 * 183.96955 * 10 9 7 22 22 C 1.53281 * 109.06716 * 297.02817 * 21 10 9 23 23 O 1.42906 * 109.46274 * 302.44999 * 22 21 10 24 24 C 1.42902 * 114.09602 * 61.15343 * 23 22 21 25 25 C 1.53093 * 109.41686 * 298.84572 * 24 23 22 26 26 C 1.39516 * 119.00330 * 0.48906 * 6 5 4 27 27 N 1.31663 * 120.63099 * 359.49938 * 26 6 5 28 28 H 1.08996 * 109.47272 * 59.99935 * 1 2 3 29 29 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46977 * 300.00040 * 1 2 3 31 31 H 1.08001 * 120.36291 * 359.97438 * 4 3 2 32 32 H 1.08006 * 120.81863 * 179.97438 * 5 4 3 33 33 H 0.97003 * 119.99799 * 354.68716 * 9 7 6 34 34 H 1.09003 * 109.46584 * 65.58591 * 11 10 9 35 35 H 1.08998 * 109.47164 * 185.58094 * 11 10 9 36 36 H 0.96994 * 120.00362 * 355.02155 * 12 11 10 37 37 H 0.96997 * 120.00520 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.52733 * 57.02497 * 21 10 9 39 39 H 1.09004 * 109.52216 * 177.20925 * 21 10 9 40 40 H 1.08997 * 109.46020 * 182.45173 * 22 21 10 41 41 H 1.09005 * 109.46503 * 62.44898 * 22 21 10 42 42 H 1.09000 * 109.47925 * 178.85963 * 24 23 22 43 43 H 1.09004 * 109.48984 * 58.83312 * 24 23 22 44 44 H 1.09001 * 109.52098 * 297.70238 * 25 24 23 45 45 H 1.09002 * 109.57333 * 177.54902 * 25 24 23 46 46 H 1.08008 * 119.68558 * 179.77966 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0551 2.5006 0.0011 6 6 3.2525 3.6510 -0.0044 7 6 3.8669 4.9932 -0.0099 8 8 5.0773 5.1077 -0.0141 9 7 3.0862 6.0918 -0.0105 10 6 3.6920 7.4210 0.1015 11 6 4.5517 7.4869 1.3654 12 7 3.7444 7.1021 2.5258 13 6 4.3289 6.9877 3.7588 14 1 5.3851 7.1807 3.8758 15 6 3.5639 6.6238 4.8584 16 7 4.1257 6.5133 6.0436 17 14 1.7372 6.2893 4.6559 18 1 1.5284 4.8519 4.3472 19 1 1.0286 6.6332 5.9148 20 1 1.2027 7.1171 3.5449 21 6 2.5895 8.4819 0.1760 22 6 1.7843 8.4595 -1.1281 23 8 2.6614 8.6865 -2.2333 24 6 3.6841 7.6991 -2.3789 25 6 4.5656 7.6911 -1.1273 26 6 1.8647 3.5076 0.0004 27 7 1.3138 2.3118 -0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0210 0.3617 0.0014 32 1 5.1325 2.5774 0.0019 33 1 2.1232 6.0024 -0.0850 34 1 5.3952 6.8035 1.2669 35 1 4.9215 8.5032 1.5007 36 1 2.7959 6.9285 2.4207 37 1 3.5911 6.2593 6.8120 38 1 1.9310 8.2646 1.0170 39 1 3.0392 9.4658 0.3091 40 1 1.0254 9.2414 -1.0997 41 1 1.3018 7.4885 -1.2405 42 1 4.2938 7.9333 -3.2515 43 1 3.2267 6.7181 -2.5076 44 1 5.0552 8.6591 -1.0204 45 1 5.3200 6.9094 -1.2169 46 1 1.2362 4.3860 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484865444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:35 Heat of formation + Delta-G solvation = -83.968263 kcal Electronic energy + Delta-G solvation = -30390.184584 eV Core-core repulsion = 26280.089713 eV Total energy + Delta-G solvation = -4110.094871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.17525 -41.42408 -39.69743 -38.66783 -37.32535 -35.58380 -33.74545 -33.67209 -32.83627 -32.08777 -31.39782 -28.56685 -28.27691 -25.55728 -25.13843 -24.70595 -24.27240 -22.99638 -22.19620 -20.56559 -19.79499 -19.65455 -18.99667 -18.15846 -17.18565 -17.11860 -16.98304 -16.76104 -16.45565 -16.21191 -16.08711 -15.58187 -15.53773 -15.33866 -15.12939 -14.87878 -14.51973 -14.43485 -14.28608 -13.90655 -13.88177 -13.73672 -13.39094 -13.13180 -12.90972 -12.82951 -12.80683 -12.30186 -12.23000 -12.16481 -11.88649 -11.77022 -11.45316 -11.14966 -11.10321 -10.99020 -10.67396 -10.52709 -10.04066 -9.66109 -9.28515 -8.04143 -5.36958 -0.40271 0.06519 1.28300 1.35996 1.43226 1.77974 1.95591 2.08299 2.44865 2.73042 2.97207 3.06473 3.26847 3.44899 3.56152 3.70071 3.74081 3.81312 3.91456 3.95190 4.02063 4.09565 4.26931 4.40861 4.41208 4.42352 4.51532 4.58449 4.65914 4.73200 4.76052 4.80104 4.83935 4.85979 4.98758 5.05364 5.11373 5.12900 5.19754 5.20626 5.54033 5.73874 6.03659 6.18233 6.26087 6.49189 6.55808 7.05995 7.20594 7.79618 8.03233 9.18019 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.005318 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.039368 B = 5263.744542 C = 7320.798184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.311 6.311 3 C 0.329 3.671 4 C -0.193 4.193 5 C 0.010 3.990 6 C -0.236 4.236 7 C 0.575 3.425 8 O -0.557 6.557 9 N -0.707 5.707 10 C 0.179 3.821 11 C 0.146 3.854 12 N -0.742 5.742 13 C -0.229 4.229 14 H 0.046 0.954 15 C -0.065 4.065 16 N -0.986 5.986 17 Si 0.952 3.048 18 H -0.283 1.283 19 H -0.296 1.296 20 H -0.238 1.238 21 C -0.154 4.154 22 C 0.063 3.937 23 O -0.392 6.392 24 C 0.072 3.928 25 C -0.157 4.157 26 C 0.178 3.822 27 N -0.550 5.550 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.171 0.829 32 H 0.155 0.845 33 H 0.406 0.594 34 H 0.030 0.970 35 H 0.026 0.974 36 H 0.366 0.634 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 -6.831 -21.126 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.151 3.849 4 C -0.214 4.214 5 C -0.016 4.016 6 C -0.242 4.242 7 C 0.363 3.637 8 O -0.436 6.436 9 N -0.360 5.360 10 C 0.093 3.907 11 C 0.019 3.981 12 N -0.388 5.388 13 C -0.360 4.360 14 H 0.064 0.936 15 C -0.256 4.256 16 N -0.637 5.637 17 Si 0.779 3.221 18 H -0.210 1.210 19 H -0.222 1.222 20 H -0.162 1.162 21 C -0.192 4.192 22 C -0.014 4.014 23 O -0.310 6.310 24 C -0.005 4.005 25 C -0.196 4.196 26 C 0.020 3.980 27 N -0.274 5.274 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.188 0.812 32 H 0.173 0.827 33 H 0.244 0.756 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.200 0.800 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.344 -6.933 -21.111 24.510 hybrid contribution -0.158 -0.330 1.170 1.226 sum -10.502 -7.263 -19.941 23.679 Atomic orbital electron populations 1.23159 0.75358 1.05041 1.02592 1.86211 1.24804 1.23883 1.86783 1.20346 0.90033 0.85082 0.89474 1.21259 0.91846 1.00032 1.08231 1.21667 1.01628 0.90072 0.88197 1.20871 0.95768 0.94491 1.13026 1.17970 0.86347 0.84227 0.75176 1.90716 1.15221 1.87150 1.50539 1.45793 1.10389 1.05098 1.74689 1.20514 0.94008 0.81933 0.94257 1.21112 0.94144 0.97425 0.85399 1.42385 1.07587 1.84622 1.04186 1.18964 0.93806 1.37551 0.85714 0.93608 1.25507 1.02918 1.02376 0.94763 1.69902 1.37141 1.56647 0.99993 0.85450 0.80462 0.78335 0.77847 1.20983 1.22246 1.16213 1.22502 0.97711 0.98980 1.00019 1.22757 0.91762 1.03082 0.83790 1.87919 1.43618 1.50478 1.49028 1.22524 0.89063 0.91904 0.96982 1.22479 0.99180 1.03505 0.94415 1.22897 0.91331 0.94629 0.89110 1.67338 1.40662 0.98795 1.20632 0.91693 0.85599 0.92670 0.81157 0.82705 0.75605 0.95219 0.95576 0.79971 0.93442 0.90148 0.89297 0.86516 0.91713 0.87491 0.92823 0.90043 0.90255 0.79817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.37 113.37 1.18 1.67 16 2 O -0.31 -6.62 10.46 -87.94 -0.92 -7.54 16 3 C 0.33 7.93 7.49 84.83 0.64 8.57 16 4 C -0.19 -4.38 10.02 22.43 0.22 -4.15 16 5 C 0.01 0.25 9.70 22.70 0.22 0.48 16 6 C -0.24 -6.43 5.89 -20.00 -0.12 -6.55 16 7 C 0.57 17.83 7.18 86.72 0.62 18.46 16 8 O -0.56 -21.13 12.72 -3.98 -0.05 -21.18 16 9 N -0.71 -18.42 3.70 -425.44 -1.57 -19.99 16 10 C 0.18 5.07 0.32 3.72 0.00 5.07 16 11 C 0.15 5.84 4.79 86.38 0.41 6.26 16 12 N -0.74 -34.49 5.02 -343.45 -1.72 -36.21 16 13 C -0.23 -13.46 10.47 84.03 0.88 -12.58 16 14 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 15 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 16 N -0.99 -64.56 13.97 21.65 0.30 -64.25 16 17 Si 0.95 44.91 27.74 68.60 1.90 46.81 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 20 H -0.24 -9.52 6.52 99.48 0.65 -8.87 16 21 C -0.15 -3.60 4.84 30.75 0.15 -3.45 16 22 C 0.06 1.10 6.67 72.08 0.48 1.58 16 23 O -0.39 -8.29 10.77 -148.98 -1.60 -9.89 16 24 C 0.07 1.46 6.68 72.01 0.48 1.94 16 25 C -0.16 -3.99 4.82 30.68 0.15 -3.84 16 26 C 0.18 4.17 10.70 85.03 0.91 5.08 16 27 N -0.55 -13.44 9.18 -307.81 -2.82 -16.27 16 28 H 0.06 0.92 8.10 -2.39 -0.02 0.91 16 29 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16 31 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.16 3.92 7.73 -2.91 -0.02 3.90 16 33 H 0.41 7.96 5.47 -92.71 -0.51 7.46 16 34 H 0.03 1.38 6.25 -2.39 -0.01 1.36 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.37 15.58 4.37 -92.71 -0.41 15.18 16 37 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 38 H 0.08 1.97 7.22 -2.39 -0.02 1.95 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 0.91 7.01 -2.38 -0.02 0.89 16 42 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.04 7.75 -2.38 -0.02 1.02 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.08 2.34 6.26 -2.39 -0.01 2.32 16 46 H 0.19 3.09 6.42 -2.91 -0.02 3.07 16 Total: -1.00 -78.69 367.70 0.25 -78.44 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.05 Total: 34.97 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 6.69 Total: 15.13 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -5.82 Total: -136.73 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -2.57 Total: -38.62 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -78.69 0.25 -78.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484865444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.529 kcal (2) G-P(sol) polarization free energy of solvation -78.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds