Wall clock time and date at job start Tue Mar 31 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34677 * 119.69783 * 2 1 4 4 O 1.21957 * 119.95762 * 359.97382 * 3 2 1 5 5 C 1.41246 * 120.08415 * 180.02562 * 3 2 1 6 6 C 1.36112 * 119.50814 * 359.97403 * 5 3 2 7 7 C 1.40408 * 119.42013 * 0.02562 * 6 5 3 8 8 C 1.36303 * 119.90170 * 0.27571 * 7 6 5 9 9 C 1.47883 * 119.75236 * 179.70348 * 8 7 6 10 10 O 1.21542 * 119.99574 * 186.02531 * 9 8 7 11 11 N 1.34771 * 120.00115 * 6.02034 * 9 8 7 12 12 C 1.46498 * 120.00003 * 185.14871 * 11 9 8 13 13 C 1.53006 * 109.54342 * 296.64675 * 12 11 9 14 14 N 1.46508 * 109.46851 * 305.38558 * 13 12 11 15 15 C 1.36932 * 120.00058 * 185.01020 * 14 13 12 16 16 H 1.08007 * 119.99771 * 4.99269 * 15 14 13 17 17 C 1.38813 * 120.00255 * 184.99038 * 15 14 13 18 18 N 1.31612 * 120.00041 * 184.84129 * 17 15 14 19 19 Si 1.86802 * 119.99428 * 4.84228 * 17 15 14 20 20 H 1.48497 * 109.47077 * 94.59725 * 19 17 15 21 21 H 1.48502 * 109.46747 * 214.59209 * 19 17 15 22 22 H 1.48493 * 109.47364 * 334.59445 * 19 17 15 23 23 C 1.53182 * 109.54680 * 176.46774 * 12 11 9 24 24 C 1.53283 * 109.06020 * 297.02822 * 23 12 11 25 25 O 1.42905 * 109.46159 * 302.44541 * 24 23 12 26 26 C 1.42902 * 114.09843 * 61.15821 * 25 24 23 27 27 C 1.53086 * 109.41546 * 298.84113 * 26 25 24 28 28 H 1.08998 * 109.47443 * 355.35494 * 1 2 3 29 29 H 1.08999 * 109.47258 * 115.36126 * 1 2 3 30 30 H 1.09005 * 109.46625 * 235.35549 * 1 2 3 31 31 H 1.08000 * 120.24051 * 179.97438 * 5 3 2 32 32 H 1.07997 * 120.29168 * 179.97438 * 6 5 3 33 33 H 1.07994 * 120.04637 * 180.02562 * 7 6 5 34 34 H 0.97002 * 119.99984 * 5.14987 * 11 9 8 35 35 H 1.08991 * 109.47056 * 65.38515 * 13 12 11 36 36 H 1.09003 * 109.47089 * 185.39040 * 13 12 11 37 37 H 0.97002 * 119.99820 * 5.01536 * 14 13 12 38 38 H 0.96997 * 119.99779 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.51690 * 57.01623 * 23 12 11 40 40 H 1.08992 * 109.52085 * 177.20664 * 23 12 11 41 41 H 1.09003 * 109.45336 * 182.44448 * 24 23 12 42 42 H 1.09004 * 109.46589 * 62.44464 * 24 23 12 43 43 H 1.08994 * 109.47969 * 178.85956 * 26 25 24 44 44 H 1.08997 * 109.49140 * 58.82948 * 26 25 24 45 45 H 1.09000 * 109.52641 * 297.70221 * 27 26 25 46 46 H 1.08997 * 109.57733 * 177.54726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1322 1.1699 0.0000 4 8 1.5161 2.2224 -0.0005 5 6 3.5446 1.1794 -0.0005 6 6 4.2230 -0.0006 -0.0005 7 6 3.5065 -1.2081 -0.0005 8 6 2.1436 -1.1895 -0.0062 9 6 1.3923 -2.4632 -0.0128 10 8 0.1824 -2.4544 -0.1284 11 7 2.0491 -3.6337 0.1092 12 6 1.3200 -4.8987 -0.0103 13 6 0.2938 -5.0066 1.1195 14 7 0.9670 -4.8327 2.4090 15 6 0.2659 -4.9915 3.5744 16 1 -0.7615 -5.3234 3.5455 17 6 0.8754 -4.7260 4.7929 18 7 0.2343 -4.9691 5.9163 19 14 2.6058 -4.0236 4.8381 20 1 2.5368 -2.5439 4.9427 21 1 3.3311 -4.5696 6.0132 22 1 3.3250 -4.3988 3.5943 23 6 2.3050 -6.0684 0.0788 24 6 3.2790 -5.9936 -1.1025 25 8 2.5438 -6.0149 -2.3278 26 6 1.6407 -4.9187 -2.4854 27 6 0.6012 -4.9502 -1.3620 28 1 -0.3634 1.0242 0.0832 29 1 -0.3634 -0.4402 -0.9286 30 1 -0.3633 -0.5843 0.8455 31 1 4.0823 2.1161 -0.0010 32 1 5.3030 -0.0081 -0.0014 33 1 4.0345 -2.1502 -0.0001 34 1 3.0046 -3.6385 0.2761 35 1 -0.4635 -4.2323 0.9976 36 1 -0.1808 -5.9874 1.0868 37 1 1.9095 -4.6049 2.4372 38 1 0.6601 -4.7832 6.7677 39 1 2.8594 -6.0071 1.0152 40 1 1.7571 -7.0098 0.0397 41 1 3.9557 -6.8475 -1.0697 42 1 3.8552 -5.0705 -1.0403 43 1 1.1372 -4.9982 -3.4488 44 1 2.1952 -3.9814 -2.4413 45 1 0.0189 -5.8691 -1.4302 46 1 -0.0627 -4.0907 -1.4545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484868526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:39 Heat of formation + Delta-G solvation = -48.044382 kcal Electronic energy + Delta-G solvation = -31030.869459 eV Core-core repulsion = 26922.332364 eV Total energy + Delta-G solvation = -4108.537095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79504 -40.61168 -38.70128 -36.92421 -36.19606 -34.73184 -33.90178 -32.45477 -31.31294 -30.93613 -29.92387 -27.68852 -27.03809 -25.12252 -23.90617 -23.49111 -22.78707 -21.72430 -21.35545 -19.49516 -18.43207 -17.88042 -17.55268 -17.07590 -16.37376 -16.26564 -16.13697 -15.84535 -15.56524 -15.03541 -14.82503 -14.70165 -14.52941 -14.24871 -13.83015 -13.46708 -13.12049 -12.95984 -12.83150 -12.70192 -12.65495 -12.63441 -12.31304 -12.11305 -11.96572 -11.84102 -11.41833 -11.29129 -10.97575 -10.80094 -10.52097 -10.32210 -10.28220 -10.21982 -9.86256 -9.69419 -9.61992 -9.05125 -8.90619 -8.23133 -7.27148 -5.83119 -3.18098 0.21852 1.42770 2.24751 2.71766 2.94497 3.19145 3.29833 3.36161 3.48076 3.74199 4.12021 4.36015 4.49839 4.52308 4.59272 4.70557 4.80674 4.85889 4.89748 4.92640 5.04271 5.20186 5.38938 5.44839 5.47006 5.50162 5.52858 5.57761 5.59271 5.74622 5.75098 5.78206 5.81519 5.88052 5.92331 6.05031 6.09858 6.14130 6.21429 6.55644 6.72418 6.81938 7.04214 7.27840 7.80502 7.93658 7.94164 8.35504 9.14744 9.86148 10.06233 11.35464 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008253 B = 0.005824 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.760735 B = 4806.513774 C = 6683.948721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.473 5.473 3 C 0.512 3.488 4 O -0.549 6.549 5 C -0.220 4.220 6 C -0.026 4.026 7 C -0.192 4.192 8 C 0.129 3.871 9 C 0.560 3.440 10 O -0.504 6.504 11 N -0.701 5.701 12 C 0.171 3.829 13 C 0.148 3.852 14 N -0.751 5.751 15 C -0.240 4.240 16 H 0.089 0.911 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.886 3.114 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.156 4.156 24 C 0.060 3.940 25 O -0.382 6.382 26 C 0.065 3.935 27 C -0.165 4.165 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.399 0.601 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.359 0.641 38 H 0.259 0.741 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 3.235 -18.065 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.184 5.184 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.243 4.243 6 C -0.047 4.047 7 C -0.217 4.217 8 C 0.016 3.984 9 C 0.344 3.656 10 O -0.379 6.379 11 N -0.354 5.354 12 C 0.086 3.914 13 C 0.020 3.980 14 N -0.397 5.397 15 C -0.369 4.369 16 H 0.107 0.893 17 C -0.191 4.191 18 N -0.579 5.579 19 Si 0.717 3.283 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.209 1.209 23 C -0.194 4.194 24 C -0.017 4.017 25 O -0.301 6.301 26 C -0.012 4.012 27 C -0.204 4.204 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.235 0.765 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.192 0.808 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.417 3.715 -18.131 20.332 hybrid contribution 1.825 0.622 0.741 2.065 sum 10.242 4.337 -17.390 20.643 Atomic orbital electron populations 1.22384 0.75639 1.04642 1.05243 1.45425 1.10201 1.05055 1.57680 1.17331 0.89314 0.82576 0.79427 1.90932 1.69909 1.29069 1.53236 1.22373 0.92673 1.00279 1.08941 1.21374 1.00985 0.91397 0.90962 1.20862 0.91233 1.00104 1.09501 1.20267 0.92468 0.87102 0.98523 1.17680 0.87094 0.82908 0.77875 1.90796 1.12762 1.86616 1.47747 1.45881 1.12080 1.05084 1.72313 1.20816 0.92930 0.81417 0.96260 1.21072 0.93389 0.99861 0.83700 1.42643 1.08887 1.86728 1.01450 1.19030 0.97497 1.37606 0.82815 0.89272 1.24684 0.97579 1.01607 0.95252 1.69696 1.37486 1.54024 0.96736 0.86544 0.85922 0.79396 0.76450 1.21334 1.21694 1.20866 1.22508 0.98438 0.98833 0.99603 1.22652 0.93375 1.01722 0.83946 1.87928 1.56221 1.47587 1.38333 1.22527 0.90686 0.89281 0.98683 1.22565 0.99249 1.05131 0.93417 0.88963 0.89499 0.88832 0.82944 0.83961 0.83622 0.76531 0.93228 0.94382 0.80776 0.93056 0.89417 0.88705 0.88538 0.93638 0.88956 0.93584 0.89640 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 8.93 59.85 0.53 1.39 16 2 N -0.47 -6.68 3.02 -122.80 -0.37 -7.05 16 3 C 0.51 7.58 7.43 -15.16 -0.11 7.47 16 4 O -0.55 -9.84 16.39 4.96 0.08 -9.76 16 5 C -0.22 -2.45 10.00 -39.20 -0.39 -2.84 16 6 C -0.03 -0.22 10.08 -39.53 -0.40 -0.62 16 7 C -0.19 -1.84 9.47 -39.46 -0.37 -2.21 16 8 C 0.13 1.62 6.63 -82.33 -0.55 1.08 16 9 C 0.56 7.67 7.09 -12.31 -0.09 7.58 16 10 O -0.50 -7.97 9.52 5.33 0.05 -7.92 16 11 N -0.70 -8.51 3.46 -48.35 -0.17 -8.68 16 12 C 0.17 2.25 0.32 -131.63 -0.04 2.21 16 13 C 0.15 2.67 4.93 -4.03 -0.02 2.65 16 14 N -0.75 -16.51 4.94 -59.90 -0.30 -16.80 16 15 C -0.24 -6.57 10.47 -15.06 -0.16 -6.73 16 16 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 17 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 18 N -0.93 -28.88 13.97 55.49 0.78 -28.10 16 19 Si 0.89 21.36 28.01 -169.99 -4.76 16.60 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -5.99 6.15 56.52 0.35 -5.65 16 23 C -0.16 -1.81 4.81 -26.49 -0.13 -1.94 16 24 C 0.06 0.57 6.67 37.30 0.25 0.82 16 25 O -0.38 -4.24 10.77 -35.23 -0.38 -4.62 16 26 C 0.07 0.66 6.68 37.20 0.25 0.91 16 27 C -0.16 -1.92 4.72 -26.59 -0.13 -2.05 16 28 H 0.09 1.28 6.88 -51.93 -0.36 0.92 16 29 H 0.09 1.11 7.34 -51.93 -0.38 0.73 16 30 H 0.09 1.42 7.11 -51.93 -0.37 1.06 16 31 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.15 0.96 6.38 -52.49 -0.34 0.63 16 34 H 0.40 3.91 5.70 -40.82 -0.23 3.68 16 35 H 0.05 1.01 6.41 -51.93 -0.33 0.67 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.36 7.53 4.38 -40.82 -0.18 7.35 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.09 1.10 7.43 -51.93 -0.39 0.72 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.36 7.17 -51.93 -0.37 -0.01 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.45 7.75 -51.93 -0.40 0.04 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.10 1.25 6.05 -51.93 -0.31 0.94 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -34.99 359.97 -7.32 -42.32 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.23 Total: 10.85 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.45 Total: 7.73 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.06 Total: -60.63 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.25 Total: -22.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.76 Total: 16.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.99 -7.32 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484868526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.726 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds