Wall clock time and date at job start Tue Mar 31 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34677 * 119.69783 * 2 1 4 4 O 1.21957 * 119.95762 * 359.97382 * 3 2 1 5 5 C 1.41246 * 120.08415 * 180.02562 * 3 2 1 6 6 C 1.36112 * 119.50814 * 359.97403 * 5 3 2 7 7 C 1.40408 * 119.42013 * 0.02562 * 6 5 3 8 8 C 1.36303 * 119.90170 * 0.27571 * 7 6 5 9 9 C 1.47883 * 119.75236 * 179.70348 * 8 7 6 10 10 O 1.21542 * 119.99574 * 186.02531 * 9 8 7 11 11 N 1.34771 * 120.00115 * 6.02034 * 9 8 7 12 12 C 1.46498 * 120.00003 * 185.14871 * 11 9 8 13 13 C 1.53006 * 109.54342 * 296.64675 * 12 11 9 14 14 N 1.46508 * 109.46851 * 305.38558 * 13 12 11 15 15 C 1.36932 * 120.00058 * 185.01020 * 14 13 12 16 16 H 1.08007 * 119.99771 * 4.99269 * 15 14 13 17 17 C 1.38813 * 120.00255 * 184.99038 * 15 14 13 18 18 N 1.31612 * 120.00041 * 184.84129 * 17 15 14 19 19 Si 1.86802 * 119.99428 * 4.84228 * 17 15 14 20 20 H 1.48497 * 109.47077 * 94.59725 * 19 17 15 21 21 H 1.48502 * 109.46747 * 214.59209 * 19 17 15 22 22 H 1.48493 * 109.47364 * 334.59445 * 19 17 15 23 23 C 1.53182 * 109.54680 * 176.46774 * 12 11 9 24 24 C 1.53283 * 109.06020 * 297.02822 * 23 12 11 25 25 O 1.42905 * 109.46159 * 302.44541 * 24 23 12 26 26 C 1.42902 * 114.09843 * 61.15821 * 25 24 23 27 27 C 1.53086 * 109.41546 * 298.84113 * 26 25 24 28 28 H 1.08998 * 109.47443 * 355.35494 * 1 2 3 29 29 H 1.08999 * 109.47258 * 115.36126 * 1 2 3 30 30 H 1.09005 * 109.46625 * 235.35549 * 1 2 3 31 31 H 1.08000 * 120.24051 * 179.97438 * 5 3 2 32 32 H 1.07997 * 120.29168 * 179.97438 * 6 5 3 33 33 H 1.07994 * 120.04637 * 180.02562 * 7 6 5 34 34 H 0.97002 * 119.99984 * 5.14987 * 11 9 8 35 35 H 1.08991 * 109.47056 * 65.38515 * 13 12 11 36 36 H 1.09003 * 109.47089 * 185.39040 * 13 12 11 37 37 H 0.97002 * 119.99820 * 5.01536 * 14 13 12 38 38 H 0.96997 * 119.99779 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.51690 * 57.01623 * 23 12 11 40 40 H 1.08992 * 109.52085 * 177.20664 * 23 12 11 41 41 H 1.09003 * 109.45336 * 182.44448 * 24 23 12 42 42 H 1.09004 * 109.46589 * 62.44464 * 24 23 12 43 43 H 1.08994 * 109.47969 * 178.85956 * 26 25 24 44 44 H 1.08997 * 109.49140 * 58.82948 * 26 25 24 45 45 H 1.09000 * 109.52641 * 297.70221 * 27 26 25 46 46 H 1.08997 * 109.57733 * 177.54726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1322 1.1699 0.0000 4 8 1.5161 2.2224 -0.0005 5 6 3.5446 1.1794 -0.0005 6 6 4.2230 -0.0006 -0.0005 7 6 3.5065 -1.2081 -0.0005 8 6 2.1436 -1.1895 -0.0062 9 6 1.3923 -2.4632 -0.0128 10 8 0.1824 -2.4544 -0.1284 11 7 2.0491 -3.6337 0.1092 12 6 1.3200 -4.8987 -0.0103 13 6 0.2938 -5.0066 1.1195 14 7 0.9670 -4.8327 2.4090 15 6 0.2659 -4.9915 3.5744 16 1 -0.7615 -5.3234 3.5455 17 6 0.8754 -4.7260 4.7929 18 7 0.2343 -4.9691 5.9163 19 14 2.6058 -4.0236 4.8381 20 1 2.5368 -2.5439 4.9427 21 1 3.3311 -4.5696 6.0132 22 1 3.3250 -4.3988 3.5943 23 6 2.3050 -6.0684 0.0788 24 6 3.2790 -5.9936 -1.1025 25 8 2.5438 -6.0149 -2.3278 26 6 1.6407 -4.9187 -2.4854 27 6 0.6012 -4.9502 -1.3620 28 1 -0.3634 1.0242 0.0832 29 1 -0.3634 -0.4402 -0.9286 30 1 -0.3633 -0.5843 0.8455 31 1 4.0823 2.1161 -0.0010 32 1 5.3030 -0.0081 -0.0014 33 1 4.0345 -2.1502 -0.0001 34 1 3.0046 -3.6385 0.2761 35 1 -0.4635 -4.2323 0.9976 36 1 -0.1808 -5.9874 1.0868 37 1 1.9095 -4.6049 2.4372 38 1 0.6601 -4.7832 6.7677 39 1 2.8594 -6.0071 1.0152 40 1 1.7571 -7.0098 0.0397 41 1 3.9557 -6.8475 -1.0697 42 1 3.8552 -5.0705 -1.0403 43 1 1.1372 -4.9982 -3.4488 44 1 2.1952 -3.9814 -2.4413 45 1 0.0189 -5.8691 -1.4302 46 1 -0.0627 -4.0907 -1.4545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484868526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:38 Heat of formation + Delta-G solvation = -74.385386 kcal Electronic energy + Delta-G solvation = -31032.011690 eV Core-core repulsion = 26922.332364 eV Total energy + Delta-G solvation = -4109.679326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.78413 -41.62515 -39.66370 -37.97480 -37.39591 -35.95297 -35.27806 -33.75574 -32.79811 -32.08367 -30.85603 -28.72144 -28.49774 -26.10487 -25.15100 -24.63807 -23.75184 -23.07034 -22.48827 -20.62373 -19.81767 -19.38282 -18.52585 -17.98164 -17.42982 -17.21415 -16.96605 -16.88822 -16.71675 -16.44872 -16.09995 -15.62023 -15.58546 -15.37381 -15.30705 -14.88259 -14.48709 -14.26920 -14.02693 -13.84154 -13.67315 -13.52821 -13.46685 -13.25714 -13.09241 -12.91992 -12.86408 -12.78354 -12.28314 -12.08488 -11.87051 -11.73989 -11.47393 -11.29795 -11.17953 -11.08157 -10.76902 -10.56632 -10.09412 -9.27620 -9.19828 -8.03997 -5.37306 -0.65882 0.55777 1.26127 1.27626 1.39627 1.46063 1.69796 1.94105 2.46115 2.55791 2.99387 3.18920 3.28673 3.43717 3.52468 3.69693 3.80213 3.82810 3.95029 4.08672 4.10012 4.16797 4.29393 4.32999 4.36793 4.43620 4.56985 4.69247 4.75259 4.78506 4.81355 4.82251 4.87198 4.92593 5.04662 5.09811 5.11726 5.15874 5.17215 5.35634 5.44295 5.74522 5.84345 6.18216 6.28498 6.32868 6.78440 6.95652 7.07016 7.79934 8.04270 9.17911 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008253 B = 0.005824 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.760735 B = 4806.513774 C = 6683.948721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.481 5.481 3 C 0.493 3.507 4 O -0.601 6.601 5 C -0.231 4.231 6 C -0.003 4.003 7 C -0.161 4.161 8 C 0.092 3.908 9 C 0.557 3.443 10 O -0.536 6.536 11 N -0.691 5.691 12 C 0.182 3.818 13 C 0.147 3.853 14 N -0.743 5.743 15 C -0.232 4.232 16 H 0.045 0.955 17 C -0.068 4.068 18 N -0.986 5.986 19 Si 0.957 3.043 20 H -0.292 1.292 21 H -0.295 1.295 22 H -0.228 1.228 23 C -0.152 4.152 24 C 0.062 3.938 25 O -0.393 6.393 26 C 0.072 3.928 27 C -0.160 4.160 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.169 0.831 32 H 0.195 0.805 33 H 0.187 0.813 34 H 0.414 0.586 35 H 0.024 0.976 36 H 0.029 0.971 37 H 0.369 0.631 38 H 0.257 0.743 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.137 2.901 -20.142 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.192 5.192 3 C 0.297 3.703 4 O -0.488 6.488 5 C -0.252 4.252 6 C -0.024 4.024 7 C -0.185 4.185 8 C -0.018 4.018 9 C 0.343 3.657 10 O -0.413 6.413 11 N -0.345 5.345 12 C 0.096 3.904 13 C 0.019 3.981 14 N -0.390 5.390 15 C -0.363 4.363 16 H 0.063 0.937 17 C -0.259 4.259 18 N -0.636 5.636 19 Si 0.783 3.217 20 H -0.219 1.219 21 H -0.222 1.222 22 H -0.152 1.152 23 C -0.190 4.190 24 C -0.015 4.015 25 O -0.311 6.311 26 C -0.005 4.005 27 C -0.199 4.199 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.187 0.813 32 H 0.212 0.788 33 H 0.204 0.796 34 H 0.253 0.747 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.204 0.796 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.133 0.867 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.648 3.329 -20.275 24.666 hybrid contribution 0.110 0.646 1.388 1.535 sum 13.758 3.975 -18.887 23.703 Atomic orbital electron populations 1.22153 0.76721 1.03575 1.04562 1.45419 1.09889 1.05803 1.58091 1.18039 0.90871 0.82001 0.79349 1.90895 1.71036 1.30616 1.56219 1.22559 0.90617 1.02487 1.09577 1.21912 1.03288 0.89540 0.87669 1.21524 0.89808 1.02406 1.04760 1.20362 0.93647 0.85806 1.02032 1.17954 0.86878 0.83666 0.77215 1.90797 1.14341 1.87082 1.49099 1.45731 1.12716 1.04126 1.71954 1.20578 0.92425 0.82823 0.94599 1.21123 0.94591 0.98300 0.84055 1.42452 1.09071 1.86361 1.01069 1.18950 0.96120 1.36177 0.85024 0.93671 1.25602 1.03135 1.02626 0.94543 1.69911 1.40134 1.56085 0.97506 0.85379 0.80109 0.77643 0.78521 1.21882 1.22180 1.15209 1.22489 0.98351 0.97311 1.00882 1.22795 0.92687 1.03994 0.81989 1.87934 1.56334 1.47923 1.38951 1.22517 0.90161 0.89639 0.98181 1.22498 0.99629 1.04316 0.93423 0.89836 0.89011 0.90905 0.81313 0.78757 0.79553 0.74676 0.95771 0.95286 0.79647 0.93457 0.89691 0.89559 0.86653 0.91026 0.87773 0.92479 0.89986 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 8.93 127.77 1.14 3.25 16 2 N -0.48 -13.47 3.02 -660.59 -1.99 -15.46 16 3 C 0.49 14.39 7.43 85.00 0.63 15.02 16 4 O -0.60 -22.31 16.39 -5.17 -0.08 -22.39 16 5 C -0.23 -4.39 10.00 22.51 0.23 -4.17 16 6 C 0.00 -0.03 10.08 22.30 0.22 0.19 16 7 C -0.16 -2.18 9.47 22.35 0.21 -1.97 16 8 C 0.09 2.09 6.63 40.45 0.27 2.35 16 9 C 0.56 14.34 7.09 86.80 0.62 14.96 16 10 O -0.54 -17.28 9.52 -3.85 -0.04 -17.32 16 11 N -0.69 -14.53 3.46 -425.17 -1.47 -16.00 16 12 C 0.18 4.44 0.32 3.73 0.00 4.44 16 13 C 0.15 5.37 4.93 86.38 0.43 5.79 16 14 N -0.74 -32.23 4.94 -343.43 -1.70 -33.92 16 15 C -0.23 -13.05 10.47 84.03 0.88 -12.17 16 16 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 17 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 18 N -0.99 -63.21 13.97 21.65 0.30 -62.90 16 19 Si 0.96 42.96 28.01 68.60 1.92 44.88 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.23 -8.13 6.15 99.48 0.61 -7.52 16 23 C -0.15 -3.04 4.81 30.75 0.15 -2.90 16 24 C 0.06 0.86 6.67 72.08 0.48 1.34 16 25 O -0.39 -7.13 10.77 -148.98 -1.60 -8.74 16 26 C 0.07 1.22 6.68 72.01 0.48 1.71 16 27 C -0.16 -3.53 4.72 30.68 0.14 -3.38 16 28 H 0.08 2.55 6.88 -2.39 -0.02 2.53 16 29 H 0.09 2.53 7.34 -2.39 -0.02 2.51 16 30 H 0.07 2.41 7.11 -2.38 -0.02 2.40 16 31 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 33 H 0.19 0.96 6.38 -2.91 -0.02 0.94 16 34 H 0.41 5.77 5.70 -92.71 -0.53 5.24 16 35 H 0.02 1.03 6.41 -2.39 -0.02 1.01 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.37 14.37 4.38 -92.71 -0.41 13.96 16 38 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.08 1.77 7.43 -2.39 -0.02 1.76 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 0.65 7.17 -2.39 -0.02 0.64 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 0.87 7.75 -2.39 -0.02 0.85 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 2.11 6.05 -2.39 -0.01 2.10 16 Total: -1.00 -83.42 359.97 1.68 -81.74 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.00 Total: 29.12 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 6.35 Total: 20.99 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -4.86 Total: -128.29 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -1.73 Total: -48.45 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.92 Total: 44.88 kcal Total: -83.42 1.68 -81.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484868526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.353 kcal (2) G-P(sol) polarization free energy of solvation -83.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds