Wall clock time and date at job start Tue Mar 31 2020 19:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35664 * 116.99985 * 2 1 4 4 C 1.39295 * 119.61575 * 180.29554 * 3 2 1 5 5 C 1.38334 * 119.30545 * 180.25096 * 4 3 2 6 6 C 1.38782 * 118.55491 * 359.46163 * 5 4 3 7 7 C 1.39128 * 119.19342 * 0.27331 * 6 5 4 8 8 C 1.48145 * 119.69079 * 180.02562 * 7 6 5 9 9 O 1.21523 * 119.99962 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00196 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00137 * 174.69638 * 10 8 7 12 12 C 1.52999 * 109.54224 * 304.11000 * 11 10 8 13 13 N 1.46504 * 109.47328 * 305.58398 * 12 11 10 14 14 C 1.36937 * 120.00074 * 175.02569 * 13 12 11 15 15 H 1.08004 * 120.00212 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99812 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00215 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47050 * 89.99892 * 18 16 14 20 20 H 1.48496 * 109.47416 * 210.00089 * 18 16 14 21 21 H 1.48503 * 109.47080 * 330.00035 * 18 16 14 22 22 C 1.53175 * 109.54161 * 183.93804 * 11 10 8 23 23 C 1.53285 * 109.06226 * 297.02459 * 22 11 10 24 24 O 1.42904 * 109.45957 * 302.44911 * 23 22 11 25 25 C 1.42900 * 114.09778 * 61.15895 * 24 23 22 26 26 C 1.53097 * 109.41417 * 298.83707 * 25 24 23 27 27 N 1.31899 * 119.62072 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46974 * 300.00467 * 1 2 3 30 30 H 1.09000 * 109.46772 * 59.99511 * 1 2 3 31 31 H 1.07995 * 120.34730 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.71989 * 179.73744 * 5 4 3 33 33 H 1.08004 * 120.39796 * 180.25012 * 6 5 4 34 34 H 0.97002 * 119.99605 * 354.69657 * 10 8 7 35 35 H 1.09001 * 109.47463 * 65.58663 * 12 11 10 36 36 H 1.08998 * 109.47666 * 185.58607 * 12 11 10 37 37 H 0.97003 * 120.00006 * 355.02961 * 13 12 11 38 38 H 0.96997 * 120.00438 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.52800 * 57.01459 * 22 11 10 40 40 H 1.09004 * 109.52363 * 177.21152 * 22 11 10 41 41 H 1.09000 * 109.46109 * 182.44950 * 23 22 11 42 42 H 1.09002 * 109.46565 * 62.44962 * 23 22 11 43 43 H 1.09002 * 109.48191 * 178.86158 * 25 24 23 44 44 H 1.08996 * 109.49439 * 58.82969 * 25 24 23 45 45 H 1.08993 * 109.52129 * 297.70688 * 26 25 24 46 46 H 1.09001 * 109.56912 * 177.54602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4364 1.2724 -0.0062 5 6 4.0578 2.5083 -0.0009 6 6 3.2666 3.6485 -0.0009 7 6 1.8819 3.5137 -0.0005 8 6 1.0269 4.7235 -0.0010 9 8 1.5356 5.8271 -0.0024 10 7 -0.3153 4.6002 -0.0011 11 6 -1.1603 5.7912 0.1156 12 6 -0.7851 6.5628 1.3824 13 7 -0.8578 5.6671 2.5394 14 6 -0.4651 6.1103 3.7741 15 1 -0.1021 7.1203 3.8951 16 6 -0.5335 5.2614 4.8703 17 7 -0.9754 4.0304 4.7228 18 14 0.0016 5.8661 6.5548 19 1 -1.1615 6.4639 7.2585 20 1 0.5262 4.7248 7.3468 21 1 1.0653 6.8904 6.3981 22 6 -2.6314 5.3705 0.1888 23 6 -3.0168 4.6680 -1.1179 24 8 -2.7727 5.5447 -2.2197 25 6 -1.4052 5.9335 -2.3641 26 6 -0.9553 6.6871 -1.1097 27 7 1.3192 2.3102 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0240 0.3663 -0.0107 32 1 5.1351 2.5842 -0.0013 33 1 3.7205 4.6286 -0.0009 34 1 -0.7217 3.7228 -0.0784 35 1 0.2295 6.9493 1.2853 36 1 -1.4782 7.3925 1.5212 37 1 -1.1841 4.7601 2.4309 38 1 -1.0235 3.4373 5.4888 39 1 -2.7740 4.6887 1.0271 40 1 -3.2563 6.2531 0.3254 41 1 -4.0741 4.4044 -1.0903 42 1 -2.4196 3.7635 -1.2339 43 1 -1.3016 6.5818 -3.2343 44 1 -0.7867 5.0459 -2.4964 45 1 -1.5463 7.5962 -0.9993 46 1 0.0996 6.9469 -1.1986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484871571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:44 Heat of formation + Delta-G solvation = -60.001201 kcal Electronic energy + Delta-G solvation = -30709.215117 eV Core-core repulsion = 26600.159535 eV Total energy + Delta-G solvation = -4109.055581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92328 -40.16812 -38.49079 -37.50307 -35.71041 -33.69756 -32.85302 -31.45761 -31.04701 -30.64062 -30.33320 -27.38304 -26.54026 -24.67302 -23.72717 -23.33051 -22.89101 -21.52445 -21.10917 -19.00971 -18.56629 -17.61836 -17.20263 -16.29746 -16.06155 -16.03063 -15.89779 -15.64883 -15.39931 -14.84613 -14.48626 -14.40470 -14.21152 -14.11264 -13.59913 -13.38204 -13.21006 -13.03322 -12.72292 -12.41808 -12.35573 -12.22331 -11.83243 -11.78008 -11.52479 -11.19552 -11.14175 -10.89467 -10.80795 -10.54721 -10.37046 -10.11115 -10.03693 -9.98394 -9.68470 -9.50380 -9.28995 -8.79728 -8.63586 -8.47963 -6.84758 -5.72960 -2.99420 0.71848 1.25247 2.97533 3.02069 3.34865 3.45321 3.50618 3.52433 3.96682 3.98542 4.12346 4.61349 4.77451 4.87637 4.97226 4.98615 5.02248 5.10461 5.15510 5.21694 5.27049 5.30903 5.35348 5.45488 5.47879 5.62325 5.67097 5.75862 5.77932 5.90166 5.95604 6.06131 6.08753 6.11945 6.25907 6.28234 6.31659 6.47481 6.55526 6.85325 7.04770 7.14332 7.27371 7.60512 7.75055 7.92170 8.45917 8.52737 9.57600 10.14979 10.50753 11.49903 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007311 B = 0.005690 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.138745 B = 4919.824272 C = 6919.466198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.173 4.173 5 C -0.049 4.049 6 C -0.150 4.150 7 C 0.131 3.869 8 C 0.582 3.418 9 O -0.523 6.523 10 N -0.692 5.692 11 C 0.172 3.828 12 C 0.141 3.859 13 N -0.724 5.724 14 C -0.230 4.230 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.904 3.096 19 H -0.291 1.291 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.154 4.154 23 C 0.061 3.939 24 O -0.385 6.385 25 C 0.066 3.934 26 C -0.163 4.163 27 N -0.513 5.513 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.404 0.596 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.382 0.618 38 H 0.252 0.748 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -5.783 -15.790 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.216 6.216 3 C 0.139 3.861 4 C -0.194 4.194 5 C -0.074 4.074 6 C -0.171 4.171 7 C -0.006 4.006 8 C 0.367 3.633 9 O -0.398 6.398 10 N -0.343 5.343 11 C 0.086 3.914 12 C 0.013 3.987 13 N -0.369 5.369 14 C -0.361 4.361 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.584 5.584 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.192 4.192 23 C -0.016 4.016 24 O -0.304 6.304 25 C -0.011 4.011 26 C -0.202 4.202 27 N -0.239 5.239 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.240 0.760 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.216 0.784 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.791 -5.118 -15.759 16.802 hybrid contribution 0.843 -0.509 1.422 1.730 sum 3.634 -5.627 -14.337 15.824 Atomic orbital electron populations 1.22915 0.76931 1.03045 1.02920 1.86217 1.23190 1.24218 1.87930 1.19737 0.89368 0.84472 0.92554 1.21233 0.91994 0.99754 1.06400 1.21406 1.00755 0.90884 0.94373 1.21980 0.93175 1.00800 1.01150 1.20907 0.92289 0.90305 0.97088 1.17619 0.82229 0.87092 0.76397 1.90714 1.73971 1.25593 1.49554 1.45742 1.05310 1.10329 1.72889 1.20654 0.89308 0.85381 0.96044 1.21088 0.99719 0.92667 0.85212 1.42212 1.78416 1.12994 1.03239 1.19216 1.34724 0.96891 0.85304 0.91360 1.24677 1.02512 0.96043 0.97841 1.69648 1.53247 1.05837 1.29637 0.86218 0.78170 0.77356 0.84671 1.21816 1.21925 1.20847 1.22468 0.94956 1.03176 0.98620 1.22641 1.01325 0.91821 0.85844 1.87890 1.26605 1.66732 1.49181 1.22511 0.82663 0.98277 0.97650 1.22561 1.04228 0.99087 0.94344 1.67139 1.40976 0.98227 1.17579 0.88649 0.91490 0.92388 0.83853 0.83509 0.83218 0.76048 0.93239 0.96029 0.78432 0.93773 0.89131 0.89389 0.88760 0.93526 0.89233 0.93542 0.90235 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -4.09 10.48 -18.69 -0.20 -4.29 16 3 C 0.32 4.57 7.49 -17.13 -0.13 4.44 16 4 C -0.17 -2.05 10.05 -39.15 -0.39 -2.44 16 5 C -0.05 -0.55 10.16 -39.35 -0.40 -0.95 16 6 C -0.15 -2.12 9.63 -39.05 -0.38 -2.50 16 7 C 0.13 2.17 6.75 -83.03 -0.56 1.61 16 8 C 0.58 10.51 7.22 -12.19 -0.09 10.42 16 9 O -0.52 -10.40 12.62 5.35 0.07 -10.33 16 10 N -0.69 -11.47 3.74 -48.28 -0.18 -11.65 16 11 C 0.17 2.85 0.32 -131.64 -0.04 2.81 16 12 C 0.14 2.99 4.79 -4.04 -0.02 2.97 16 13 N -0.72 -18.34 5.21 -59.91 -0.31 -18.65 16 14 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 18 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 C -0.15 -2.30 4.84 -26.49 -0.13 -2.43 16 23 C 0.06 0.76 6.67 37.30 0.25 1.01 16 24 O -0.39 -5.30 10.77 -35.23 -0.38 -5.68 16 25 C 0.07 0.85 6.68 37.21 0.25 1.10 16 26 C -0.16 -2.39 4.82 -26.59 -0.13 -2.51 16 27 N -0.51 -8.05 8.40 -9.87 -0.08 -8.13 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.15 2.03 7.63 -52.48 -0.40 1.63 16 34 H 0.40 6.28 6.74 -40.82 -0.28 6.01 16 35 H 0.05 1.15 6.25 -51.93 -0.32 0.83 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.38 9.99 6.51 -40.82 -0.27 9.73 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.09 1.50 7.22 -51.93 -0.37 1.13 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.56 7.01 -51.93 -0.36 0.19 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.61 7.75 -51.93 -0.40 0.20 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.09 1.50 6.25 -51.93 -0.32 1.17 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -33.53 373.10 -7.22 -40.76 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -6.50 Total: 14.17 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.96 Total: 7.73 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.15 Total: -65.93 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.51 Total: -20.31 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.53 -7.22 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484871571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.243 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds