Wall clock time and date at job start Tue Mar 31 2020 19:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35664 * 116.99985 * 2 1 4 4 C 1.39295 * 119.61575 * 180.29554 * 3 2 1 5 5 C 1.38334 * 119.30545 * 180.25096 * 4 3 2 6 6 C 1.38782 * 118.55491 * 359.46163 * 5 4 3 7 7 C 1.39128 * 119.19342 * 0.27331 * 6 5 4 8 8 C 1.48145 * 119.69079 * 180.02562 * 7 6 5 9 9 O 1.21523 * 119.99962 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00196 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00137 * 174.69638 * 10 8 7 12 12 C 1.52999 * 109.54224 * 304.11000 * 11 10 8 13 13 N 1.46504 * 109.47328 * 305.58398 * 12 11 10 14 14 C 1.36937 * 120.00074 * 175.02569 * 13 12 11 15 15 H 1.08004 * 120.00212 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99812 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00215 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47050 * 89.99892 * 18 16 14 20 20 H 1.48496 * 109.47416 * 210.00089 * 18 16 14 21 21 H 1.48503 * 109.47080 * 330.00035 * 18 16 14 22 22 C 1.53175 * 109.54161 * 183.93804 * 11 10 8 23 23 C 1.53285 * 109.06226 * 297.02459 * 22 11 10 24 24 O 1.42904 * 109.45957 * 302.44911 * 23 22 11 25 25 C 1.42900 * 114.09778 * 61.15895 * 24 23 22 26 26 C 1.53097 * 109.41417 * 298.83707 * 25 24 23 27 27 N 1.31899 * 119.62072 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46974 * 300.00467 * 1 2 3 30 30 H 1.09000 * 109.46772 * 59.99511 * 1 2 3 31 31 H 1.07995 * 120.34730 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.71989 * 179.73744 * 5 4 3 33 33 H 1.08004 * 120.39796 * 180.25012 * 6 5 4 34 34 H 0.97002 * 119.99605 * 354.69657 * 10 8 7 35 35 H 1.09001 * 109.47463 * 65.58663 * 12 11 10 36 36 H 1.08998 * 109.47666 * 185.58607 * 12 11 10 37 37 H 0.97003 * 120.00006 * 355.02961 * 13 12 11 38 38 H 0.96997 * 120.00438 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.52800 * 57.01459 * 22 11 10 40 40 H 1.09004 * 109.52363 * 177.21152 * 22 11 10 41 41 H 1.09000 * 109.46109 * 182.44950 * 23 22 11 42 42 H 1.09002 * 109.46565 * 62.44962 * 23 22 11 43 43 H 1.09002 * 109.48191 * 178.86158 * 25 24 23 44 44 H 1.08996 * 109.49439 * 58.82969 * 25 24 23 45 45 H 1.08993 * 109.52129 * 297.70688 * 26 25 24 46 46 H 1.09001 * 109.56912 * 177.54602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4364 1.2724 -0.0062 5 6 4.0578 2.5083 -0.0009 6 6 3.2666 3.6485 -0.0009 7 6 1.8819 3.5137 -0.0005 8 6 1.0269 4.7235 -0.0010 9 8 1.5356 5.8271 -0.0024 10 7 -0.3153 4.6002 -0.0011 11 6 -1.1603 5.7912 0.1156 12 6 -0.7851 6.5628 1.3824 13 7 -0.8578 5.6671 2.5394 14 6 -0.4651 6.1103 3.7741 15 1 -0.1021 7.1203 3.8951 16 6 -0.5335 5.2614 4.8703 17 7 -0.9754 4.0304 4.7228 18 14 0.0016 5.8661 6.5548 19 1 -1.1615 6.4639 7.2585 20 1 0.5262 4.7248 7.3468 21 1 1.0653 6.8904 6.3981 22 6 -2.6314 5.3705 0.1888 23 6 -3.0168 4.6680 -1.1179 24 8 -2.7727 5.5447 -2.2197 25 6 -1.4052 5.9335 -2.3641 26 6 -0.9553 6.6871 -1.1097 27 7 1.3192 2.3102 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0240 0.3663 -0.0107 32 1 5.1351 2.5842 -0.0013 33 1 3.7205 4.6286 -0.0009 34 1 -0.7217 3.7228 -0.0784 35 1 0.2295 6.9493 1.2853 36 1 -1.4782 7.3925 1.5212 37 1 -1.1841 4.7601 2.4309 38 1 -1.0235 3.4373 5.4888 39 1 -2.7740 4.6887 1.0271 40 1 -3.2563 6.2531 0.3254 41 1 -4.0741 4.4044 -1.0903 42 1 -2.4196 3.7635 -1.2339 43 1 -1.3016 6.5818 -3.2343 44 1 -0.7867 5.0459 -2.4964 45 1 -1.5463 7.5962 -0.9993 46 1 0.0996 6.9469 -1.1986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484871571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:43 Heat of formation + Delta-G solvation = -85.592046 kcal Electronic energy + Delta-G solvation = -30710.324819 eV Core-core repulsion = 26600.159535 eV Total energy + Delta-G solvation = -4110.165284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11686 -41.33113 -39.65925 -38.59039 -37.22464 -35.52100 -34.03669 -32.93494 -32.32334 -32.04250 -31.64320 -28.38022 -28.16829 -25.92737 -25.33516 -24.62929 -23.91816 -23.10313 -22.32301 -20.37229 -19.70013 -19.28489 -18.73017 -17.45874 -17.09484 -17.04017 -17.01849 -16.88456 -16.81515 -16.31839 -16.15413 -15.65475 -15.48317 -15.29118 -15.16762 -14.87990 -14.40778 -14.35287 -14.15209 -13.83133 -13.63957 -13.30517 -13.18852 -13.06986 -12.83530 -12.80248 -12.69801 -12.35108 -12.16748 -12.14821 -11.98662 -11.77276 -11.51552 -11.23451 -10.99786 -10.97798 -10.67315 -10.50225 -9.98202 -9.59631 -8.97662 -7.96899 -5.23443 -0.38422 0.24064 1.41987 1.43274 1.51705 1.71172 2.02655 2.12322 2.52484 2.81796 2.91652 2.99990 3.36078 3.54704 3.72886 3.82890 3.84687 3.94889 3.97819 4.03221 4.21477 4.24464 4.25920 4.41931 4.43258 4.46032 4.48231 4.62042 4.71665 4.76300 4.78525 4.83116 4.85423 4.92565 5.02465 5.08426 5.10357 5.12039 5.17781 5.34203 5.44681 5.57534 6.11054 6.20410 6.24486 6.41131 6.68307 7.17398 7.32218 8.06119 8.33649 9.25603 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007311 B = 0.005690 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.138745 B = 4919.824272 C = 6919.466198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.298 3.702 4 C -0.162 4.162 5 C -0.036 4.036 6 C -0.157 4.157 7 C 0.096 3.904 8 C 0.574 3.426 9 O -0.551 6.551 10 N -0.686 5.686 11 C 0.175 3.825 12 C 0.143 3.857 13 N -0.728 5.728 14 C -0.242 4.242 15 H 0.064 0.936 16 C -0.069 4.069 17 N -0.962 5.962 18 Si 0.967 3.033 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.277 1.277 22 C -0.148 4.148 23 C 0.066 3.934 24 O -0.389 6.389 25 C 0.071 3.929 26 C -0.156 4.156 27 N -0.527 5.527 28 H 0.126 0.874 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.177 0.823 32 H 0.192 0.808 33 H 0.149 0.851 34 H 0.408 0.592 35 H 0.027 0.973 36 H 0.023 0.977 37 H 0.376 0.624 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -6.732 -16.683 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.117 3.883 4 C -0.182 4.182 5 C -0.061 4.061 6 C -0.178 4.178 7 C -0.040 4.040 8 C 0.360 3.640 9 O -0.430 6.430 10 N -0.336 5.336 11 C 0.089 3.911 12 C 0.015 3.985 13 N -0.371 5.371 14 C -0.374 4.374 15 H 0.082 0.918 16 C -0.262 4.262 17 N -0.612 5.612 18 Si 0.797 3.203 19 H -0.211 1.211 20 H -0.221 1.221 21 H -0.202 1.202 22 C -0.186 4.186 23 C -0.011 4.011 24 O -0.308 6.308 25 C -0.005 4.005 26 C -0.195 4.195 27 N -0.255 5.255 28 H 0.144 0.856 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.195 0.805 32 H 0.209 0.791 33 H 0.167 0.833 34 H 0.244 0.756 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.209 0.791 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.131 0.869 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.489 -6.051 -16.678 18.081 hybrid contribution 0.663 -0.234 1.686 1.827 sum 4.153 -6.285 -14.992 16.778 Atomic orbital electron populations 1.23048 0.76100 1.04782 1.01996 1.86219 1.24076 1.23723 1.87940 1.20209 0.90609 0.84349 0.93158 1.21711 0.91170 1.01315 1.04005 1.21884 1.02589 0.89397 0.92252 1.22186 0.92620 1.02101 1.00941 1.20809 0.93069 0.90025 1.00088 1.18028 0.82670 0.87541 0.75757 1.90681 1.74483 1.26742 1.51055 1.45705 1.05112 1.10443 1.72362 1.20581 0.90324 0.85475 0.94683 1.21132 0.98406 0.92746 0.86168 1.42266 1.78078 1.13179 1.03571 1.19517 1.34247 0.96809 0.86780 0.91754 1.25425 1.03199 0.96339 1.01229 1.69792 1.54422 1.06740 1.30275 0.85230 0.77914 0.76798 0.80374 1.21109 1.22051 1.20191 1.22398 0.93606 1.03013 0.99559 1.22685 1.02856 0.91447 0.84070 1.87896 1.26821 1.66877 1.49178 1.22533 0.82322 0.98380 0.97280 1.22490 1.03597 0.99134 0.94261 1.67005 1.41796 0.98409 1.18240 0.85591 0.93808 0.91900 0.80512 0.79123 0.83295 0.75569 0.95497 0.95942 0.79140 0.94164 0.91022 0.89312 0.86450 0.92776 0.86892 0.93691 0.89580 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.38 113.37 1.18 1.94 16 2 O -0.31 -7.95 10.48 -89.80 -0.94 -8.89 16 3 C 0.30 8.26 7.49 84.94 0.64 8.89 16 4 C -0.16 -3.41 10.05 22.55 0.23 -3.18 16 5 C -0.04 -0.72 10.16 22.42 0.23 -0.50 16 6 C -0.16 -4.38 9.63 22.61 0.22 -4.16 16 7 C 0.10 3.23 6.75 41.84 0.28 3.52 16 8 C 0.57 21.55 7.22 86.87 0.63 22.17 16 9 O -0.55 -22.95 12.62 -3.79 -0.05 -23.00 16 10 N -0.69 -23.48 3.74 -424.94 -1.59 -25.07 16 11 C 0.18 5.95 0.32 3.72 0.00 5.95 16 12 C 0.14 6.26 4.79 86.38 0.41 6.68 16 13 N -0.73 -38.05 5.21 -343.44 -1.79 -39.84 16 14 C -0.24 -14.10 9.99 84.03 0.84 -13.26 16 15 H 0.06 3.73 7.83 -2.91 -0.02 3.70 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 17 N -0.96 -59.07 13.06 21.65 0.28 -58.79 16 18 Si 0.97 47.71 29.55 68.60 2.03 49.73 16 19 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 C -0.15 -4.42 4.84 30.75 0.15 -4.27 16 23 C 0.07 1.58 6.67 72.08 0.48 2.06 16 24 O -0.39 -9.96 10.77 -148.98 -1.60 -11.57 16 25 C 0.07 1.75 6.68 72.01 0.48 2.23 16 26 C -0.16 -4.55 4.82 30.68 0.15 -4.40 16 27 N -0.53 -16.74 8.40 -298.21 -2.50 -19.24 16 28 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 30 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 31 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.15 4.08 7.63 -2.91 -0.02 4.06 16 34 H 0.41 13.12 6.74 -92.71 -0.63 12.49 16 35 H 0.03 1.32 6.25 -2.39 -0.01 1.30 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.38 20.38 6.51 -92.71 -0.60 19.78 16 38 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 39 H 0.07 2.43 7.22 -2.39 -0.02 2.42 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 1.23 7.01 -2.39 -0.02 1.21 16 43 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.04 1.13 7.75 -2.39 -0.02 1.11 16 45 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.08 2.62 6.25 -2.39 -0.01 2.60 16 Total: -1.00 -73.85 373.10 0.00 -73.84 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.21 Total: 42.77 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.37 Total: 20.05 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -5.60 Total: -142.94 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -2.59 Total: -43.46 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -73.85 0.00 -73.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484871571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.748 kcal (2) G-P(sol) polarization free energy of solvation -73.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds