Wall clock time and date at job start Tue Mar 31 2020 19:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35647 * 116.99441 * 2 1 4 4 C 1.39335 * 120.54809 * 0.23947 * 3 2 1 5 5 C 1.38304 * 118.44485 * 180.23862 * 4 3 2 6 6 C 1.38764 * 119.43998 * 359.48432 * 5 4 3 7 7 N 1.31379 * 121.06988 * 0.29791 * 6 5 4 8 8 C 1.32849 * 121.69419 * 359.97438 * 7 6 5 9 9 C 1.47830 * 119.78348 * 180.02562 * 8 7 6 10 10 O 1.21561 * 120.00281 * 140.03938 * 9 8 7 11 11 N 1.34772 * 119.99962 * 320.04157 * 9 8 7 12 12 C 1.46926 * 120.63102 * 3.45799 * 11 9 8 13 13 C 1.52760 * 109.01100 * 233.58630 * 12 11 9 14 14 C 1.53039 * 109.38545 * 305.59048 * 13 12 11 15 15 O 1.42906 * 109.44707 * 301.22730 * 14 13 12 16 16 C 1.52999 * 109.46052 * 181.26324 * 14 13 12 17 17 N 1.46500 * 109.47171 * 59.92942 * 16 14 13 18 18 C 1.36945 * 119.99561 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00170 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99558 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99990 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00271 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46818 * 90.00212 * 22 20 18 24 24 H 1.48493 * 109.46909 * 210.00435 * 22 20 18 25 25 H 1.48503 * 109.47025 * 330.00279 * 22 20 18 26 26 C 1.53039 * 109.53912 * 61.23568 * 14 13 12 27 27 C 1.46925 * 120.63284 * 183.74691 * 11 9 8 28 28 H 1.08993 * 109.47468 * 59.99906 * 1 2 3 29 29 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47022 * 299.99460 * 1 2 3 31 31 H 1.08007 * 120.77749 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.27812 * 179.75496 * 5 4 3 33 33 H 1.08004 * 119.46342 * 180.27223 * 6 5 4 34 34 H 1.08995 * 109.58494 * 353.42598 * 12 11 9 35 35 H 1.09009 * 109.58667 * 113.84719 * 12 11 9 36 36 H 1.09007 * 109.56096 * 185.55263 * 13 12 11 37 37 H 1.08996 * 109.35729 * 65.50065 * 13 12 11 38 38 H 0.96702 * 113.99609 * 300.05751 * 15 14 13 39 39 H 1.08997 * 109.47032 * 179.97438 * 16 14 13 40 40 H 1.08998 * 109.46592 * 299.92710 * 16 14 13 41 41 H 0.96992 * 120.00575 * 0.02562 * 17 16 14 42 42 H 0.96994 * 120.00199 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.49891 * 178.68024 * 26 14 13 44 44 H 1.08998 * 109.49316 * 58.58899 * 26 14 13 45 45 H 1.09008 * 109.58460 * 246.15455 * 27 11 9 46 46 H 1.08997 * 109.58767 * 6.57586 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2970 2.3844 0.0050 5 6 1.9695 3.5929 -0.0003 6 6 3.3571 3.6012 0.0006 7 7 4.0419 2.4800 0.0004 8 6 3.4410 1.2951 0.0000 9 6 4.2532 0.0599 0.0004 10 8 3.9125 -0.8913 0.6763 11 7 5.3714 -0.0116 -0.7485 12 6 5.8373 1.1545 -1.5113 13 6 6.0279 0.7498 -2.9719 14 6 6.9586 -0.4628 -3.0458 15 8 8.2149 -0.1354 -2.4485 16 6 7.1758 -0.8502 -4.5099 17 7 7.7792 0.2750 -5.2284 18 6 8.0666 0.1604 -6.5625 19 1 7.8480 -0.7592 -7.0849 20 6 8.6388 1.2263 -7.2431 21 7 8.9146 1.1164 -8.5254 22 14 9.0162 2.8171 -6.3396 23 1 10.3918 2.7561 -5.7835 24 1 8.9141 3.9587 -7.2837 25 1 8.0427 3.0010 -5.2333 26 6 6.3283 -1.6383 -2.2954 27 6 6.1442 -1.2590 -0.8227 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2174 2.3527 0.0094 32 1 1.4194 4.5222 -0.0006 33 1 3.8827 4.5447 0.0009 34 1 5.0971 1.9520 -1.4480 35 1 6.7871 1.5016 -1.1043 36 1 6.4666 1.5796 -3.5262 37 1 5.0610 0.4933 -3.4048 38 1 8.6722 0.6028 -2.8741 39 1 7.8390 -1.7135 -4.5628 40 1 6.2177 -1.1004 -4.9654 41 1 7.9752 1.1010 -4.7593 42 1 9.3141 1.8613 -9.0011 43 1 6.9807 -2.5083 -2.3683 44 1 5.3586 -1.8723 -2.7347 45 1 7.1195 -1.1127 -0.3583 46 1 5.6063 -2.0534 -0.3053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484962972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:39 Heat of formation + Delta-G solvation = -49.582476 kcal Electronic energy + Delta-G solvation = -29948.640872 eV Core-core repulsion = 25840.037080 eV Total energy + Delta-G solvation = -4108.603792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37058 -39.92476 -38.58193 -38.30796 -35.53947 -34.12699 -33.01249 -31.90050 -31.40385 -30.88924 -30.59952 -27.91082 -27.12107 -25.11104 -23.57572 -23.34262 -23.07627 -21.68274 -20.57158 -19.50615 -18.43621 -18.03505 -17.77806 -17.34699 -16.49528 -16.08105 -15.80125 -15.49160 -15.17420 -14.90029 -14.75482 -14.48278 -14.34214 -14.05771 -13.86485 -13.79512 -13.38035 -13.18792 -12.96493 -12.83514 -12.55232 -12.31426 -11.97683 -11.90851 -11.87944 -11.57699 -11.38119 -11.11942 -11.04259 -10.91815 -10.39661 -10.30278 -10.25086 -10.13960 -9.75416 -9.61096 -9.34146 -8.96463 -8.86373 -8.49313 -7.30839 -5.81524 -3.18332 0.40312 0.81550 2.57751 2.71589 2.91064 3.29328 3.33149 3.39975 3.40427 3.94978 4.18184 4.27395 4.47335 4.51544 4.53117 4.69027 4.71789 4.77190 4.85019 4.86673 4.99961 5.09393 5.16437 5.19647 5.42682 5.45264 5.49098 5.53500 5.55818 5.62466 5.75174 5.87165 5.94945 5.96876 6.02305 6.10466 6.25657 6.32960 6.57257 6.58671 6.65588 6.76759 7.35309 7.45072 7.88171 7.99469 8.13358 8.36237 9.13565 9.85584 10.03738 11.36832 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.003261 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.685994 B = 8584.775347 C = 9364.910553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.286 6.286 3 C 0.131 3.869 4 C -0.172 4.172 5 C -0.110 4.110 6 C 0.056 3.944 7 N -0.414 5.414 8 C 0.052 3.948 9 C 0.578 3.422 10 O -0.528 6.528 11 N -0.589 5.589 12 C 0.107 3.893 13 C -0.162 4.162 14 C 0.125 3.875 15 O -0.557 6.557 16 C 0.134 3.866 17 N -0.752 5.752 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.005 3.995 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.116 4.116 27 C 0.119 3.881 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.377 0.623 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.357 0.643 42 H 0.260 0.740 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.440 3.817 20.190 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.196 6.196 3 C 0.081 3.919 4 C -0.199 4.199 5 C -0.130 4.130 6 C -0.104 4.104 7 N -0.126 5.126 8 C -0.086 4.086 9 C 0.364 3.636 10 O -0.403 6.403 11 N -0.321 5.321 12 C -0.016 4.016 13 C -0.200 4.200 14 C 0.084 3.916 15 O -0.363 6.363 16 C 0.006 3.994 17 N -0.399 5.399 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.154 4.154 27 C -0.003 4.003 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.184 0.816 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.225 0.775 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.190 0.810 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.772 2.467 20.713 26.766 hybrid contribution -0.753 2.040 -0.160 2.181 sum -17.526 4.507 20.553 27.384 Atomic orbital electron populations 1.23213 0.77976 1.04820 1.01343 1.86281 1.21491 1.24984 1.86821 1.19949 0.92141 0.85747 0.94070 1.21738 1.01102 0.91768 1.05271 1.22199 0.95758 0.98449 0.96560 1.22816 0.91495 0.96538 0.99563 1.67825 1.39168 0.97273 1.08307 1.20562 0.88640 0.93077 1.06354 1.17590 0.80079 0.85761 0.80128 1.90790 1.70104 1.37398 1.42039 1.47921 1.24328 1.13660 1.46183 1.21995 1.01496 0.87714 0.90364 1.22548 1.01219 0.99803 0.96445 1.21387 0.83659 0.93708 0.92818 1.86419 1.33669 1.56558 1.59648 1.21295 0.97090 0.91764 0.89235 1.42646 1.76019 1.12631 1.08645 1.19038 1.33993 1.00743 0.83669 0.89169 1.24685 1.00961 0.97855 0.95597 1.69695 1.48755 1.31942 1.07660 0.86576 0.78305 0.84694 0.79042 1.20847 1.21633 1.20463 1.21844 1.01104 0.97586 0.94890 1.21576 0.96107 0.85894 0.96751 0.92346 0.87537 0.92362 0.83599 0.83868 0.81579 0.87917 0.90658 0.89858 0.90855 0.77518 0.94439 0.94877 0.80994 0.92986 0.89633 0.90312 0.90345 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.29 -3.37 9.26 -34.68 -0.32 -3.69 16 3 C 0.13 1.51 6.67 -38.55 -0.26 1.26 16 4 C -0.17 -1.36 9.13 -39.15 -0.36 -1.72 16 5 C -0.11 -0.75 10.10 -39.36 -0.40 -1.14 16 6 C 0.06 0.48 11.17 -17.55 -0.20 0.28 16 7 N -0.41 -4.93 7.28 -9.71 -0.07 -5.00 16 8 C 0.05 0.71 6.01 -82.88 -0.50 0.21 16 9 C 0.58 9.04 7.28 -12.34 -0.09 8.95 16 10 O -0.53 -9.49 15.55 -10.72 -0.17 -9.65 16 11 N -0.59 -8.55 2.98 -174.15 -0.52 -9.07 16 12 C 0.11 1.47 5.75 -3.93 -0.02 1.45 16 13 C -0.16 -2.42 4.91 -26.83 -0.13 -2.55 16 14 C 0.13 1.96 0.71 -90.58 -0.06 1.90 16 15 O -0.56 -8.86 11.71 -35.23 -0.41 -9.27 16 16 C 0.13 2.56 5.40 -4.04 -0.02 2.54 16 17 N -0.75 -17.16 4.87 -59.91 -0.29 -17.45 16 18 C -0.24 -6.82 10.47 -15.05 -0.16 -6.98 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 22 Si 0.88 21.35 27.74 -169.99 -4.71 16.64 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 26 C -0.12 -1.60 5.11 -26.61 -0.14 -1.74 16 27 C 0.12 1.64 6.19 -3.71 -0.02 1.62 16 28 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 29 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.28 7.69 -51.93 -0.40 -0.12 16 31 H 0.15 0.71 6.46 -52.48 -0.34 0.37 16 32 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.17 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.10 1.37 4.58 -51.93 -0.24 1.13 16 35 H 0.08 1.03 7.81 -51.92 -0.41 0.63 16 36 H 0.08 1.33 6.82 -51.92 -0.35 0.98 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.38 5.74 7.85 45.56 0.36 6.10 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.36 7.71 3.44 -40.82 -0.14 7.57 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.09 7.81 -51.92 -0.41 0.69 16 46 H 0.09 1.25 7.02 -51.93 -0.36 0.89 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -35.53 366.84 -7.31 -42.84 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.66 Total: 12.15 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.46 Total: 5.25 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.11 Total: -59.79 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.90 Total: -22.61 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.53 -7.31 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484962972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.746 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds