Wall clock time and date at job start Tue Mar 31 2020 19:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35647 * 116.99441 * 2 1 4 4 C 1.39335 * 120.54809 * 0.23947 * 3 2 1 5 5 C 1.38304 * 118.44485 * 180.23862 * 4 3 2 6 6 C 1.38764 * 119.43998 * 359.48432 * 5 4 3 7 7 N 1.31379 * 121.06988 * 0.29791 * 6 5 4 8 8 C 1.32849 * 121.69419 * 359.97438 * 7 6 5 9 9 C 1.47830 * 119.78348 * 180.02562 * 8 7 6 10 10 O 1.21561 * 120.00281 * 140.03938 * 9 8 7 11 11 N 1.34772 * 119.99962 * 320.04157 * 9 8 7 12 12 C 1.46926 * 120.63102 * 3.45799 * 11 9 8 13 13 C 1.52760 * 109.01100 * 233.58630 * 12 11 9 14 14 C 1.53039 * 109.38545 * 305.59048 * 13 12 11 15 15 O 1.42906 * 109.44707 * 301.22730 * 14 13 12 16 16 C 1.52999 * 109.46052 * 181.26324 * 14 13 12 17 17 N 1.46500 * 109.47171 * 59.92942 * 16 14 13 18 18 C 1.36945 * 119.99561 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00170 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99558 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99990 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00271 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46818 * 90.00212 * 22 20 18 24 24 H 1.48493 * 109.46909 * 210.00435 * 22 20 18 25 25 H 1.48503 * 109.47025 * 330.00279 * 22 20 18 26 26 C 1.53039 * 109.53912 * 61.23568 * 14 13 12 27 27 C 1.46925 * 120.63284 * 183.74691 * 11 9 8 28 28 H 1.08993 * 109.47468 * 59.99906 * 1 2 3 29 29 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47022 * 299.99460 * 1 2 3 31 31 H 1.08007 * 120.77749 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.27812 * 179.75496 * 5 4 3 33 33 H 1.08004 * 119.46342 * 180.27223 * 6 5 4 34 34 H 1.08995 * 109.58494 * 353.42598 * 12 11 9 35 35 H 1.09009 * 109.58667 * 113.84719 * 12 11 9 36 36 H 1.09007 * 109.56096 * 185.55263 * 13 12 11 37 37 H 1.08996 * 109.35729 * 65.50065 * 13 12 11 38 38 H 0.96702 * 113.99609 * 300.05751 * 15 14 13 39 39 H 1.08997 * 109.47032 * 179.97438 * 16 14 13 40 40 H 1.08998 * 109.46592 * 299.92710 * 16 14 13 41 41 H 0.96992 * 120.00575 * 0.02562 * 17 16 14 42 42 H 0.96994 * 120.00199 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.49891 * 178.68024 * 26 14 13 44 44 H 1.08998 * 109.49316 * 58.58899 * 26 14 13 45 45 H 1.09008 * 109.58460 * 246.15455 * 27 11 9 46 46 H 1.08997 * 109.58767 * 6.57586 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2970 2.3844 0.0050 5 6 1.9695 3.5929 -0.0003 6 6 3.3571 3.6012 0.0006 7 7 4.0419 2.4800 0.0004 8 6 3.4410 1.2951 0.0000 9 6 4.2532 0.0599 0.0004 10 8 3.9125 -0.8913 0.6763 11 7 5.3714 -0.0116 -0.7485 12 6 5.8373 1.1545 -1.5113 13 6 6.0279 0.7498 -2.9719 14 6 6.9586 -0.4628 -3.0458 15 8 8.2149 -0.1354 -2.4485 16 6 7.1758 -0.8502 -4.5099 17 7 7.7792 0.2750 -5.2284 18 6 8.0666 0.1604 -6.5625 19 1 7.8480 -0.7592 -7.0849 20 6 8.6388 1.2263 -7.2431 21 7 8.9146 1.1164 -8.5254 22 14 9.0162 2.8171 -6.3396 23 1 10.3918 2.7561 -5.7835 24 1 8.9141 3.9587 -7.2837 25 1 8.0427 3.0010 -5.2333 26 6 6.3283 -1.6383 -2.2954 27 6 6.1442 -1.2590 -0.8227 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2174 2.3527 0.0094 32 1 1.4194 4.5222 -0.0006 33 1 3.8827 4.5447 0.0009 34 1 5.0971 1.9520 -1.4480 35 1 6.7871 1.5016 -1.1043 36 1 6.4666 1.5796 -3.5262 37 1 5.0610 0.4933 -3.4048 38 1 8.6722 0.6028 -2.8741 39 1 7.8390 -1.7135 -4.5628 40 1 6.2177 -1.1004 -4.9654 41 1 7.9752 1.1010 -4.7593 42 1 9.3141 1.8613 -9.0011 43 1 6.9807 -2.5083 -2.3683 44 1 5.3586 -1.8723 -2.7347 45 1 7.1195 -1.1127 -0.3583 46 1 5.6063 -2.0534 -0.3053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484962972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:38 Heat of formation + Delta-G solvation = -76.298318 kcal Electronic energy + Delta-G solvation = -29949.799358 eV Core-core repulsion = 25840.037080 eV Total energy + Delta-G solvation = -4109.762277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18766 -40.99387 -39.60178 -39.21796 -36.89739 -35.85896 -33.85484 -33.52521 -32.53919 -32.03075 -31.74995 -28.73079 -28.33167 -26.23131 -24.85994 -24.55895 -23.84412 -23.16231 -21.81085 -20.59961 -20.01459 -19.13107 -18.73927 -18.11526 -17.46349 -17.21396 -16.85403 -16.71917 -16.31934 -16.11130 -16.03644 -15.70310 -15.34707 -15.07231 -14.87292 -14.75084 -14.65441 -14.56611 -14.42590 -14.08973 -13.59584 -13.49358 -13.40478 -13.11396 -12.85170 -12.76070 -12.50103 -12.45156 -12.24382 -12.22799 -12.11966 -11.88542 -11.40919 -11.38027 -11.02550 -10.93724 -10.81980 -10.35930 -9.76246 -9.48833 -9.35077 -8.03475 -5.39325 -0.31142 0.18033 1.37197 1.43789 1.50090 1.57260 1.86676 2.14604 2.48349 2.66380 3.08132 3.19201 3.30351 3.44038 3.55663 3.68092 3.72748 3.83512 3.91009 3.99389 4.08145 4.12230 4.27356 4.31426 4.33323 4.35417 4.46289 4.56772 4.68035 4.70163 4.79009 4.81735 4.86461 4.89214 4.96753 5.00826 5.01709 5.07934 5.26862 5.39677 5.52027 5.72747 6.13732 6.18210 6.30085 6.69675 6.69871 7.04543 7.04900 7.76713 7.97615 9.17971 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.003261 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.685994 B = 8584.775347 C = 9364.910553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.167 4.167 5 C -0.091 4.091 6 C 0.051 3.949 7 N -0.437 5.437 8 C 0.010 3.990 9 C 0.572 3.428 10 O -0.565 6.565 11 N -0.591 5.591 12 C 0.116 3.884 13 C -0.155 4.155 14 C 0.136 3.864 15 O -0.557 6.557 16 C 0.133 3.867 17 N -0.749 5.749 18 C -0.239 4.239 19 H 0.052 0.948 20 C -0.064 4.064 21 N -0.985 5.985 22 Si 0.957 3.043 23 H -0.274 1.274 24 H -0.296 1.296 25 H -0.243 1.243 26 C -0.111 4.111 27 C 0.122 3.878 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.179 0.821 32 H 0.187 0.813 33 H 0.196 0.804 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.381 0.619 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.366 0.634 42 H 0.259 0.741 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.081 6.701 22.191 30.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.066 3.934 4 C -0.194 4.194 5 C -0.110 4.110 6 C -0.110 4.110 7 N -0.149 5.149 8 C -0.126 4.126 9 C 0.360 3.640 10 O -0.443 6.443 11 N -0.322 5.322 12 C -0.007 4.007 13 C -0.194 4.194 14 C 0.095 3.905 15 O -0.364 6.364 16 C 0.006 3.994 17 N -0.396 5.396 18 C -0.370 4.370 19 H 0.070 0.930 20 C -0.255 4.255 21 N -0.635 5.635 22 Si 0.783 3.217 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.167 1.167 26 C -0.149 4.149 27 C 0.000 4.000 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.095 0.905 31 H 0.196 0.804 32 H 0.204 0.796 33 H 0.213 0.787 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.201 0.799 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.429 5.322 22.753 29.760 hybrid contribution -0.347 1.111 -0.805 1.415 sum -18.776 6.432 21.948 29.591 Atomic orbital electron populations 1.23505 0.75669 1.05953 1.03030 1.86229 1.24074 1.25924 1.86996 1.20170 0.91895 0.86878 0.94410 1.22160 1.02607 0.90759 1.03828 1.22705 0.95240 0.99692 0.93380 1.23464 0.92796 0.96461 0.98328 1.67703 1.40210 0.97623 1.09363 1.20289 0.89377 0.92718 1.10247 1.18083 0.80062 0.86446 0.79372 1.90741 1.70998 1.39068 1.43540 1.48009 1.24294 1.13872 1.46044 1.21960 1.01877 0.87667 0.89159 1.22471 1.00560 0.99022 0.97311 1.21266 0.84009 0.94772 0.90469 1.86432 1.33702 1.56820 1.59478 1.21413 0.96228 0.90443 0.91314 1.42511 1.76041 1.14057 1.06996 1.18973 1.33063 0.99294 0.85657 0.93030 1.25584 1.01300 1.02171 0.96452 1.69896 1.50400 1.33267 1.09906 0.85402 0.79083 0.78820 0.78441 1.19994 1.22326 1.16713 1.21818 1.01255 0.97181 0.94665 1.21523 0.96033 0.85982 0.96471 0.90609 0.86914 0.90536 0.80390 0.79553 0.78699 0.87024 0.90372 0.90355 0.91318 0.77038 0.95331 0.95183 0.79901 0.93243 0.88761 0.90071 0.90275 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.25 16 2 O -0.32 -7.47 9.26 -74.29 -0.69 -8.16 16 3 C 0.12 2.56 6.67 22.94 0.15 2.71 16 4 C -0.17 -2.08 9.13 22.55 0.21 -1.87 16 5 C -0.09 -0.83 10.10 22.41 0.23 -0.60 16 6 C 0.05 0.69 11.17 84.89 0.95 1.64 16 7 N -0.44 -9.70 7.28 -184.62 -1.34 -11.04 16 8 C 0.01 0.26 6.01 41.93 0.25 0.52 16 9 C 0.57 18.19 7.28 86.78 0.63 18.82 16 10 O -0.56 -21.07 15.55 11.42 0.18 -20.89 16 11 N -0.59 -17.05 2.98 -823.16 -2.45 -19.51 16 12 C 0.12 3.04 5.75 86.22 0.50 3.53 16 13 C -0.15 -4.43 4.91 30.53 0.15 -4.28 16 14 C 0.14 4.12 0.71 -10.77 -0.01 4.11 16 15 O -0.56 -16.84 11.71 -148.98 -1.74 -18.58 16 16 C 0.13 5.05 5.40 86.38 0.47 5.51 16 17 N -0.75 -33.62 4.87 -343.45 -1.67 -35.29 16 18 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 19 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 20 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 21 N -0.98 -62.75 13.97 21.65 0.30 -62.45 16 22 Si 0.96 43.41 27.74 68.60 1.90 45.31 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.24 -9.51 6.52 99.48 0.65 -8.86 16 26 C -0.11 -3.00 5.11 30.67 0.16 -2.84 16 27 C 0.12 3.36 6.19 86.36 0.53 3.89 16 28 H 0.08 0.55 7.71 -2.39 -0.02 0.53 16 29 H 0.11 1.04 8.14 -2.38 -0.02 1.03 16 30 H 0.08 0.54 7.69 -2.39 -0.02 0.52 16 31 H 0.18 0.93 6.46 -2.91 -0.02 0.91 16 32 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 33 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.11 2.82 4.58 -2.39 -0.01 2.81 16 35 H 0.08 2.01 7.81 -2.38 -0.02 1.99 16 36 H 0.08 2.33 6.82 -2.38 -0.02 2.31 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.38 10.77 7.85 -74.06 -0.58 10.19 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.37 15.05 3.44 -92.71 -0.32 14.73 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.08 2.16 7.81 -2.38 -0.02 2.14 16 46 H 0.09 2.46 7.02 -2.39 -0.02 2.44 16 Total: -1.00 -80.68 366.84 1.22 -79.45 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.07 Total: 34.63 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 6.67 Total: 16.53 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.17 Total: -128.29 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -2.25 Total: -47.64 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.90 Total: 45.31 kcal Total: -80.68 1.22 -79.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484962972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.154 kcal (2) G-P(sol) polarization free energy of solvation -80.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds