Wall clock time and date at job start Tue Mar 31 2020 18:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35586 * 118.80603 * 2 1 4 4 C 1.34863 * 121.79928 * 179.97438 * 3 2 1 5 5 C 1.41669 * 119.34268 * 359.97438 * 4 3 2 6 6 O 1.22088 * 121.07194 * 180.02562 * 5 4 3 7 7 C 1.47103 * 117.85946 * 359.97438 * 5 4 3 8 8 C 1.47287 * 120.87866 * 180.02562 * 7 5 4 9 9 O 1.21622 * 120.00363 * 359.72413 * 8 7 5 10 10 N 1.34779 * 119.99894 * 180.02562 * 8 7 5 11 11 C 1.46504 * 119.99929 * 174.83790 * 10 8 7 12 12 C 1.53003 * 109.45995 * 302.56920 * 11 10 8 13 13 O 1.42901 * 109.47069 * 300.74727 * 12 11 10 14 14 C 1.53040 * 109.45748 * 182.61027 * 11 10 8 15 15 C 1.53195 * 109.31483 * 301.34432 * 14 11 10 16 16 N 1.46930 * 108.77107 * 305.36745 * 15 14 11 17 17 C 1.36939 * 120.62704 * 233.62764 * 16 15 14 18 18 H 1.07991 * 119.99998 * 31.75889 * 17 16 15 19 19 C 1.38814 * 119.99653 * 211.76202 * 17 16 15 20 20 N 1.31619 * 120.00592 * 11.13630 * 19 17 16 21 21 Si 1.86800 * 119.99867 * 191.13538 * 19 17 16 22 22 H 1.48497 * 109.47238 * 90.00063 * 21 19 17 23 23 H 1.48501 * 109.47104 * 210.00128 * 21 19 17 24 24 H 1.48500 * 109.46986 * 330.00010 * 21 19 17 25 25 C 1.46925 * 118.73864 * 53.61141 * 16 15 14 26 26 C 1.53036 * 109.45833 * 62.54186 * 11 10 8 27 27 C 1.34345 * 118.80675 * 180.23688 * 2 1 3 28 28 H 1.09003 * 109.47415 * 90.00100 * 1 2 3 29 29 H 1.08996 * 109.47310 * 209.99768 * 1 2 3 30 30 H 1.09001 * 109.47349 * 329.99944 * 1 2 3 31 31 H 1.08004 * 119.10027 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.32855 * 179.97438 * 4 3 2 33 33 H 0.96995 * 120.00153 * 354.83524 * 10 8 7 34 34 H 1.08997 * 109.47325 * 60.74860 * 12 11 10 35 35 H 1.08996 * 109.46639 * 180.75284 * 12 11 10 36 36 H 0.96696 * 113.99985 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.49903 * 61.29672 * 14 11 10 38 38 H 1.09005 * 109.49564 * 181.39106 * 14 11 10 39 39 H 1.08991 * 109.58837 * 185.58260 * 15 14 11 40 40 H 1.09002 * 109.58614 * 65.15366 * 15 14 11 41 41 H 0.96991 * 120.00275 * 180.02562 * 20 19 17 42 42 H 1.09011 * 109.58362 * 186.60223 * 25 16 15 43 43 H 1.09001 * 109.58899 * 66.17961 * 25 16 15 44 44 H 1.08999 * 109.49674 * 178.60675 * 26 11 10 45 45 H 1.08995 * 109.49921 * 298.69986 * 26 11 10 46 46 H 1.08003 * 119.81627 * 0.05382 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4650 1.2585 0.0005 5 6 4.2228 0.0615 0.0016 6 8 5.4434 0.0884 0.0026 7 6 3.4916 -1.2149 0.0027 8 6 4.2128 -2.4992 0.0045 9 8 5.4289 -2.5138 0.0000 10 7 3.5250 -3.6583 0.0050 11 6 4.2380 -4.9332 -0.1074 12 6 5.0688 -4.9410 -1.3922 13 8 4.2072 -4.7596 -2.5177 14 6 3.2267 -6.0811 -0.1476 15 6 2.3736 -6.0494 1.1245 16 7 3.2650 -6.0710 2.2923 17 6 3.1045 -7.0109 3.2752 18 1 2.7314 -7.9935 3.0270 19 6 3.4214 -6.7006 4.5905 20 7 3.6642 -5.4530 4.9323 21 14 3.5031 -8.0537 5.8757 22 1 4.8831 -8.5992 5.9332 23 1 3.1345 -7.4988 7.2029 24 1 2.5567 -9.1389 5.5128 25 6 4.3321 -5.0653 2.3852 26 6 5.1632 -5.1080 1.0990 27 6 2.1123 -1.1772 -0.0049 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.5444 2.1031 -0.0004 32 1 3.9610 2.2179 0.0001 33 1 2.5580 -3.6484 0.0798 34 1 5.7978 -4.1313 -1.3585 35 1 5.5888 -5.8946 -1.4827 36 1 4.6671 -4.7538 -3.3683 37 1 2.5831 -5.9686 -1.0201 38 1 3.7572 -7.0315 -0.2063 39 1 1.7198 -6.9212 1.1478 40 1 1.7736 -5.1395 1.1395 41 1 3.8860 -5.2362 5.8513 42 1 4.9705 -5.2878 3.2403 43 1 3.8918 -4.0752 2.5031 44 1 5.6755 -6.0675 1.0286 45 1 5.8979 -4.3030 1.1138 46 1 1.5500 -2.0993 -0.0096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485019274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:55 Heat of formation + Delta-G solvation = -46.093475 kcal Electronic energy + Delta-G solvation = -30653.693167 eV Core-core repulsion = 26545.240670 eV Total energy + Delta-G solvation = -4108.452497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08786 -39.77730 -37.92179 -36.93912 -36.02166 -33.91934 -32.78207 -32.46244 -31.35866 -30.11549 -29.61145 -27.13717 -26.63496 -24.81410 -23.82673 -22.86561 -22.21513 -21.25768 -20.42973 -18.65278 -18.15468 -17.33268 -17.06896 -16.84558 -16.45857 -15.94178 -15.76971 -14.97896 -14.78516 -14.57446 -14.51906 -14.06066 -13.96360 -13.59689 -13.38631 -13.34768 -13.29451 -13.02309 -12.86607 -12.55172 -12.44984 -12.24876 -12.13445 -11.78190 -11.35629 -11.16150 -10.83603 -10.72288 -10.31945 -10.22437 -10.00629 -9.89827 -9.78660 -9.66976 -9.47324 -9.30440 -8.75921 -8.43915 -8.41042 -7.94913 -6.57665 -5.74686 -3.23887 0.88653 1.28291 2.25836 3.31211 3.38948 3.45510 3.46413 3.57331 4.04477 4.07913 4.28259 4.50708 4.52345 4.55869 4.68178 4.78780 4.96816 5.04502 5.23320 5.37526 5.43824 5.49308 5.59208 5.61300 5.70486 5.76712 5.85134 6.04566 6.16798 6.27185 6.34737 6.44502 6.46455 6.57641 6.65607 6.71113 6.74288 6.87705 6.98015 7.20414 7.47696 7.78207 7.83376 7.86078 8.09328 8.25698 8.51257 8.85940 9.25665 9.87170 10.45841 11.32650 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.003950 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.738512 B = 7086.719335 C = 7900.266276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.477 5.477 3 C 0.126 3.874 4 C -0.270 4.270 5 C 0.406 3.594 6 O -0.479 6.479 7 C -0.287 4.287 8 C 0.577 3.423 9 O -0.516 6.516 10 N -0.706 5.706 11 C 0.198 3.802 12 C 0.061 3.939 13 O -0.570 6.570 14 C -0.133 4.133 15 C 0.147 3.853 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.182 3.818 26 C -0.154 4.154 27 C 0.169 3.831 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.389 0.611 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.369 0.631 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.010 0.990 41 H 0.254 0.746 42 H 0.085 0.915 43 H 0.019 0.981 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 11.321 -14.121 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.164 5.164 3 C 0.002 3.998 4 C -0.294 4.294 5 C 0.291 3.709 6 O -0.360 6.360 7 C -0.298 4.298 8 C 0.364 3.636 9 O -0.391 6.391 10 N -0.358 5.358 11 C 0.113 3.887 12 C -0.018 4.018 13 O -0.374 6.374 14 C -0.173 4.173 15 C 0.020 3.980 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.081 0.919 19 C -0.193 4.193 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.057 3.943 26 C -0.194 4.194 27 C 0.039 3.961 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.179 0.821 32 H 0.169 0.831 33 H 0.224 0.776 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.215 0.785 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.037 0.963 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.101 11.407 -13.466 19.856 hybrid contribution -0.226 -0.657 0.385 0.794 sum -9.327 10.750 -13.081 19.331 Atomic orbital electron populations 1.22480 0.76271 1.05738 1.04189 1.42621 1.08528 1.04488 1.60732 1.21653 0.94310 0.88300 0.95569 1.22473 0.93166 1.01392 1.12394 1.18189 0.89315 0.86987 0.76396 1.90815 1.14301 1.88958 1.41924 1.22644 0.92176 0.97582 1.17407 1.17340 0.87186 0.82365 0.76723 1.90754 1.12906 1.86768 1.48711 1.45789 1.09678 1.05204 1.75124 1.20233 0.92743 0.82863 0.92897 1.22782 0.93009 1.00191 0.85778 1.86437 1.37868 1.96563 1.16512 1.22249 0.98399 0.97106 0.99539 1.20876 0.91900 0.98190 0.87011 1.44046 1.31309 1.35350 1.20699 1.19160 1.41327 0.91783 0.86243 0.91915 1.25168 1.01247 0.95746 0.97115 1.69987 1.51039 1.16081 1.17479 0.86289 0.77944 0.81337 0.81133 1.21402 1.21763 1.20467 1.20650 0.89382 0.90972 0.93306 1.22610 0.98852 1.01541 0.96386 1.22237 0.93381 0.88955 0.91566 0.90187 0.88820 0.89054 0.82053 0.83119 0.77592 0.91520 0.93601 0.78540 0.91816 0.91033 0.92619 0.97205 0.93613 0.89684 0.96332 0.92177 0.90655 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.15 10.52 59.84 0.63 0.78 16 2 N -0.48 -3.50 2.97 -124.40 -0.37 -3.87 16 3 C 0.13 0.94 10.17 -17.09 -0.17 0.76 16 4 C -0.27 -3.14 10.01 -39.47 -0.40 -3.53 16 5 C 0.41 7.05 6.97 -34.68 -0.24 6.81 16 6 O -0.48 -10.70 16.41 -15.18 -0.25 -10.95 16 7 C -0.29 -4.61 6.05 -102.72 -0.62 -5.23 16 8 C 0.58 11.09 7.18 -12.58 -0.09 11.00 16 9 O -0.52 -11.94 11.82 -14.76 -0.17 -12.12 16 10 N -0.71 -12.10 3.92 -48.67 -0.19 -12.29 16 11 C 0.20 3.60 0.44 -131.78 -0.06 3.54 16 12 C 0.06 1.01 5.68 37.16 0.21 1.22 16 13 O -0.57 -8.24 12.84 -35.23 -0.45 -8.69 16 14 C -0.13 -2.31 4.85 -26.61 -0.13 -2.44 16 15 C 0.15 2.93 6.24 -3.71 -0.02 2.91 16 16 N -0.59 -14.61 2.98 -172.32 -0.51 -15.13 16 17 C -0.26 -6.95 9.57 -15.06 -0.14 -7.10 16 18 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 19 C 0.01 0.17 5.03 -17.43 -0.09 0.09 16 20 N -0.90 -26.47 11.11 55.49 0.62 -25.86 16 21 Si 0.90 21.79 29.57 -169.99 -5.03 16.76 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.18 4.55 4.99 -3.71 -0.02 4.53 16 26 C -0.15 -3.30 4.71 -26.61 -0.13 -3.42 16 27 C 0.17 1.79 9.79 -16.54 -0.16 1.63 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.22 7.96 -51.93 -0.41 -0.20 16 30 H 0.09 0.08 7.96 -51.93 -0.41 -0.34 16 31 H 0.16 0.46 7.97 -52.48 -0.42 0.04 16 32 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.39 5.76 5.29 -40.82 -0.22 5.54 16 34 H 0.07 1.24 6.17 -51.93 -0.32 0.92 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.37 3.74 9.12 45.56 0.42 4.16 16 37 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 40 H 0.01 0.19 6.89 -51.93 -0.36 -0.17 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.08 2.42 6.15 -51.92 -0.32 2.10 16 43 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.72 6.23 -51.93 -0.32 1.40 16 46 H 0.16 1.34 6.37 -52.48 -0.33 1.00 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -39.90 365.38 -7.86 -47.76 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.57 Total: 7.34 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.43 Total: 11.54 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.46 Total: -57.14 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.88 Total: -31.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.90 -7.86 -47.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485019274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.662 kcal (2) G-P(sol) polarization free energy of solvation -39.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds