Wall clock time and date at job start Tue Mar 31 2020 18:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35586 * 118.80603 * 2 1 4 4 C 1.34863 * 121.79928 * 179.97438 * 3 2 1 5 5 C 1.41669 * 119.34268 * 359.97438 * 4 3 2 6 6 O 1.22088 * 121.07194 * 180.02562 * 5 4 3 7 7 C 1.47103 * 117.85946 * 359.97438 * 5 4 3 8 8 C 1.47287 * 120.87866 * 180.02562 * 7 5 4 9 9 O 1.21622 * 120.00363 * 359.72413 * 8 7 5 10 10 N 1.34779 * 119.99894 * 180.02562 * 8 7 5 11 11 C 1.46504 * 119.99929 * 174.83790 * 10 8 7 12 12 C 1.53003 * 109.45995 * 302.56920 * 11 10 8 13 13 O 1.42901 * 109.47069 * 300.74727 * 12 11 10 14 14 C 1.53040 * 109.45748 * 182.61027 * 11 10 8 15 15 C 1.53195 * 109.31483 * 301.34432 * 14 11 10 16 16 N 1.46930 * 108.77107 * 305.36745 * 15 14 11 17 17 C 1.36939 * 120.62704 * 233.62764 * 16 15 14 18 18 H 1.07991 * 119.99998 * 31.75889 * 17 16 15 19 19 C 1.38814 * 119.99653 * 211.76202 * 17 16 15 20 20 N 1.31619 * 120.00592 * 11.13630 * 19 17 16 21 21 Si 1.86800 * 119.99867 * 191.13538 * 19 17 16 22 22 H 1.48497 * 109.47238 * 90.00063 * 21 19 17 23 23 H 1.48501 * 109.47104 * 210.00128 * 21 19 17 24 24 H 1.48500 * 109.46986 * 330.00010 * 21 19 17 25 25 C 1.46925 * 118.73864 * 53.61141 * 16 15 14 26 26 C 1.53036 * 109.45833 * 62.54186 * 11 10 8 27 27 C 1.34345 * 118.80675 * 180.23688 * 2 1 3 28 28 H 1.09003 * 109.47415 * 90.00100 * 1 2 3 29 29 H 1.08996 * 109.47310 * 209.99768 * 1 2 3 30 30 H 1.09001 * 109.47349 * 329.99944 * 1 2 3 31 31 H 1.08004 * 119.10027 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.32855 * 179.97438 * 4 3 2 33 33 H 0.96995 * 120.00153 * 354.83524 * 10 8 7 34 34 H 1.08997 * 109.47325 * 60.74860 * 12 11 10 35 35 H 1.08996 * 109.46639 * 180.75284 * 12 11 10 36 36 H 0.96696 * 113.99985 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.49903 * 61.29672 * 14 11 10 38 38 H 1.09005 * 109.49564 * 181.39106 * 14 11 10 39 39 H 1.08991 * 109.58837 * 185.58260 * 15 14 11 40 40 H 1.09002 * 109.58614 * 65.15366 * 15 14 11 41 41 H 0.96991 * 120.00275 * 180.02562 * 20 19 17 42 42 H 1.09011 * 109.58362 * 186.60223 * 25 16 15 43 43 H 1.09001 * 109.58899 * 66.17961 * 25 16 15 44 44 H 1.08999 * 109.49674 * 178.60675 * 26 11 10 45 45 H 1.08995 * 109.49921 * 298.69986 * 26 11 10 46 46 H 1.08003 * 119.81627 * 0.05382 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4650 1.2585 0.0005 5 6 4.2228 0.0615 0.0016 6 8 5.4434 0.0884 0.0026 7 6 3.4916 -1.2149 0.0027 8 6 4.2128 -2.4992 0.0045 9 8 5.4289 -2.5138 0.0000 10 7 3.5250 -3.6583 0.0050 11 6 4.2380 -4.9332 -0.1074 12 6 5.0688 -4.9410 -1.3922 13 8 4.2072 -4.7596 -2.5177 14 6 3.2267 -6.0811 -0.1476 15 6 2.3736 -6.0494 1.1245 16 7 3.2650 -6.0710 2.2923 17 6 3.1045 -7.0109 3.2752 18 1 2.7314 -7.9935 3.0270 19 6 3.4214 -6.7006 4.5905 20 7 3.6642 -5.4530 4.9323 21 14 3.5031 -8.0537 5.8757 22 1 4.8831 -8.5992 5.9332 23 1 3.1345 -7.4988 7.2029 24 1 2.5567 -9.1389 5.5128 25 6 4.3321 -5.0653 2.3852 26 6 5.1632 -5.1080 1.0990 27 6 2.1123 -1.1772 -0.0049 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.5444 2.1031 -0.0004 32 1 3.9610 2.2179 0.0001 33 1 2.5580 -3.6484 0.0798 34 1 5.7978 -4.1313 -1.3585 35 1 5.5888 -5.8946 -1.4827 36 1 4.6671 -4.7538 -3.3683 37 1 2.5831 -5.9686 -1.0201 38 1 3.7572 -7.0315 -0.2063 39 1 1.7198 -6.9212 1.1478 40 1 1.7736 -5.1395 1.1395 41 1 3.8860 -5.2362 5.8513 42 1 4.9705 -5.2878 3.2403 43 1 3.8918 -4.0752 2.5031 44 1 5.6755 -6.0675 1.0286 45 1 5.8979 -4.3030 1.1138 46 1 1.5500 -2.0993 -0.0096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485019274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:54 Heat of formation + Delta-G solvation = -77.686068 kcal Electronic energy + Delta-G solvation = -30655.063125 eV Core-core repulsion = 26545.240670 eV Total energy + Delta-G solvation = -4109.822455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07921 -41.13219 -39.15237 -38.42196 -37.41261 -35.58387 -34.09492 -33.40173 -32.94149 -31.71416 -31.22855 -28.38322 -27.65481 -25.83826 -25.62357 -23.98621 -23.82878 -22.70065 -21.92695 -20.22607 -19.24268 -18.79677 -18.20029 -18.03335 -17.71243 -16.94501 -16.80618 -16.68200 -16.24364 -15.99643 -15.66243 -15.55092 -15.23481 -15.14563 -14.87008 -14.75188 -14.49108 -14.26164 -14.10420 -13.87407 -13.47277 -13.33841 -13.20040 -13.16325 -12.98090 -12.64847 -12.62858 -12.45882 -12.20709 -12.02068 -11.83843 -11.42610 -11.34267 -11.08515 -10.68141 -10.61191 -10.54595 -10.14069 -9.90105 -8.99266 -8.60512 -7.84548 -5.36511 -0.11704 0.41527 1.46240 1.48845 1.56773 1.58595 2.03885 2.25742 2.51534 2.88647 3.26103 3.32501 3.35029 3.67181 3.73118 3.82225 3.88789 3.96489 4.04104 4.24945 4.36421 4.44007 4.49389 4.52637 4.58638 4.65417 4.68204 4.74427 4.76624 4.83663 4.90805 4.99905 5.04512 5.19215 5.20862 5.33272 5.38883 5.47421 5.65028 5.68242 5.73759 5.77863 5.84201 6.42147 6.76297 6.86640 7.14099 7.16389 7.49499 7.86866 8.40953 9.20837 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.003950 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.738512 B = 7086.719335 C = 7900.266276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.459 5.459 3 C 0.167 3.833 4 C -0.303 4.303 5 C 0.379 3.621 6 O -0.568 6.568 7 C -0.350 4.350 8 C 0.569 3.431 9 O -0.571 6.571 10 N -0.696 5.696 11 C 0.198 3.802 12 C 0.075 3.925 13 O -0.569 6.569 14 C -0.116 4.116 15 C 0.143 3.857 16 N -0.605 5.605 17 C -0.260 4.260 18 H 0.071 0.929 19 C -0.049 4.049 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.291 1.291 23 H -0.296 1.296 24 H -0.262 1.262 25 C 0.201 3.799 26 C -0.143 4.143 27 C 0.212 3.788 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.228 0.772 32 H 0.160 0.840 33 H 0.402 0.598 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.391 0.609 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.247 0.753 42 H 0.040 0.960 43 H -0.007 1.007 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.119 11.379 -15.849 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.142 5.142 3 C 0.041 3.959 4 C -0.326 4.326 5 C 0.272 3.728 6 O -0.457 6.457 7 C -0.360 4.360 8 C 0.359 3.641 9 O -0.451 6.451 10 N -0.349 5.349 11 C 0.112 3.888 12 C -0.004 4.004 13 O -0.376 6.376 14 C -0.155 4.155 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.245 4.245 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.186 1.186 25 C 0.074 3.926 26 C -0.183 4.183 27 C 0.077 3.923 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.142 0.858 31 H 0.244 0.756 32 H 0.177 0.823 33 H 0.239 0.761 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.011 0.989 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.333 11.465 -15.250 23.863 hybrid contribution 1.080 -0.605 0.858 1.506 sum -13.253 10.860 -14.392 22.376 Atomic orbital electron populations 1.23023 0.72084 1.08022 1.06650 1.43303 1.10996 1.03557 1.56355 1.22472 0.93112 0.90156 0.90111 1.22383 0.94946 0.99566 1.15720 1.19046 0.88989 0.89446 0.75340 1.90756 1.17345 1.90087 1.47494 1.22346 0.94470 0.95667 1.23558 1.17915 0.86878 0.83786 0.75544 1.90718 1.15416 1.87609 1.51329 1.45632 1.10103 1.04412 1.74715 1.20126 0.92695 0.83926 0.92084 1.22416 0.92238 0.99832 0.85935 1.86352 1.37662 1.96504 1.17063 1.22101 0.97896 0.96323 0.99220 1.21098 0.91822 0.99372 0.85954 1.44219 1.32273 1.34673 1.21729 1.19543 1.40061 0.92611 0.86827 0.91100 1.25923 1.01721 0.97594 0.99234 1.70169 1.52753 1.18142 1.17295 0.85282 0.77786 0.79121 0.78333 1.21840 1.22312 1.18607 1.20204 0.89226 0.89826 0.93295 1.22377 0.98635 1.00494 0.96770 1.22509 0.91518 0.91398 0.86835 0.87562 0.87782 0.85837 0.75573 0.82274 0.76126 0.94404 0.92119 0.76041 0.88610 0.91131 0.91623 0.95532 0.94406 0.94113 0.98875 0.92230 0.93108 0.78744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.07 10.52 127.77 1.34 1.28 16 2 N -0.46 -4.41 2.97 -547.48 -1.63 -6.04 16 3 C 0.17 1.71 10.17 83.34 0.85 2.56 16 4 C -0.30 -6.91 10.01 22.34 0.22 -6.68 16 5 C 0.38 14.21 6.97 25.45 0.18 14.38 16 6 O -0.57 -28.60 16.41 13.54 0.22 -28.37 16 7 C -0.35 -11.59 6.05 -18.63 -0.11 -11.70 16 8 C 0.57 23.20 7.18 86.62 0.62 23.82 16 9 O -0.57 -29.16 11.82 15.04 0.18 -28.98 16 10 N -0.70 -23.88 3.92 -426.14 -1.67 -25.55 16 11 C 0.20 7.17 0.44 3.63 0.00 7.17 16 12 C 0.07 2.46 5.68 71.98 0.41 2.87 16 13 O -0.57 -15.28 12.84 -148.98 -1.91 -17.19 16 14 C -0.12 -3.74 4.85 30.67 0.15 -3.59 16 15 C 0.14 5.38 6.24 86.36 0.54 5.92 16 16 N -0.61 -30.02 2.98 -699.09 -2.08 -32.10 16 17 C -0.26 -14.14 9.57 84.03 0.80 -13.34 16 18 H 0.07 3.69 7.85 -2.91 -0.02 3.66 16 19 C -0.05 -2.79 5.03 84.86 0.43 -2.36 16 20 N -0.94 -57.08 11.11 21.65 0.24 -56.84 16 21 Si 0.97 45.32 29.57 68.60 2.03 47.35 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.20 10.51 4.99 86.36 0.43 10.94 16 26 C -0.14 -6.44 4.71 30.67 0.14 -6.30 16 27 C 0.21 3.92 9.79 84.25 0.82 4.74 16 28 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.10 -0.23 7.96 -2.39 -0.02 -0.25 16 30 H 0.12 -0.81 7.96 -2.39 -0.02 -0.83 16 31 H 0.23 -0.49 7.97 -2.91 -0.02 -0.51 16 32 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.40 11.12 5.29 -92.71 -0.49 10.63 16 34 H 0.04 1.49 6.17 -2.39 -0.01 1.48 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.39 7.07 9.12 -74.06 -0.68 6.39 16 37 H 0.10 2.55 7.66 -2.39 -0.02 2.53 16 38 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 40 H 0.03 0.93 6.89 -2.39 -0.02 0.91 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.04 2.47 6.15 -2.38 -0.01 2.46 16 43 H -0.01 -0.39 7.74 -2.39 -0.02 -0.41 16 44 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.05 2.54 6.23 -2.39 -0.01 2.53 16 46 H 0.20 2.33 6.37 -2.91 -0.02 2.31 16 Total: -1.00 -100.63 365.38 2.07 -98.55 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.14 Total: 19.46 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 6.83 Total: 29.71 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.14 Total: -120.54 kcal Atomic # 8 Polarization: -73.03 SS G_CDS: -1.51 Total: -74.54 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -100.63 2.07 -98.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485019274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.869 kcal (2) G-P(sol) polarization free energy of solvation -100.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds