Wall clock time and date at job start Tue Mar 31 2020 18:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00263 * 2 1 4 4 O 1.21498 * 119.99779 * 176.13771 * 3 2 1 5 5 C 1.48327 * 120.00241 * 356.13930 * 3 2 1 6 6 N 1.31601 * 127.15462 * 5.89070 * 5 3 2 7 7 O 1.21563 * 111.54768 * 179.97438 * 6 5 3 8 8 C 1.32812 * 111.51776 * 359.97433 * 7 6 5 9 9 C 1.35713 * 106.70274 * 359.83201 * 8 7 6 10 10 C 1.50037 * 123.86508 * 179.48229 * 9 8 7 11 11 O 1.43629 * 107.87506 * 345.80312 * 10 9 8 12 12 C 1.42992 * 114.37796 * 49.80796 * 11 10 9 13 13 C 1.50669 * 130.82838 * 180.19072 * 8 7 6 14 14 C 1.46500 * 119.99764 * 180.28143 * 2 1 3 15 15 H 1.08997 * 109.47571 * 179.72285 * 14 2 1 16 16 C 1.53004 * 109.46824 * 299.72484 * 14 2 1 17 17 N 1.46500 * 109.46845 * 304.99523 * 16 14 2 18 18 C 1.36942 * 119.99931 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00029 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99729 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00581 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99731 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46653 * 90.00466 * 22 20 18 24 24 H 1.48500 * 109.46984 * 210.00169 * 22 20 18 25 25 H 1.48497 * 109.47340 * 330.00299 * 22 20 18 26 26 C 1.52996 * 109.47401 * 59.71883 * 14 2 1 27 27 C 1.53005 * 117.50398 * 248.75237 * 26 14 2 28 28 C 1.53005 * 117.50261 * 180.09142 * 26 14 2 29 29 H 1.09003 * 109.46512 * 275.39553 * 1 2 3 30 30 H 1.09006 * 109.47088 * 35.38808 * 1 2 3 31 31 H 1.08994 * 109.47915 * 155.39466 * 1 2 3 32 32 H 1.09000 * 109.93571 * 226.10878 * 10 9 8 33 33 H 1.08996 * 109.64128 * 105.32455 * 10 9 8 34 34 H 1.08999 * 109.39797 * 169.44688 * 12 11 10 35 35 H 1.08996 * 109.33557 * 49.66244 * 12 11 10 36 36 H 1.08998 * 109.82029 * 283.56553 * 13 8 7 37 37 H 1.08997 * 109.82135 * 44.49928 * 13 8 7 38 38 H 1.08991 * 109.47743 * 65.00088 * 16 14 2 39 39 H 1.09003 * 109.46951 * 185.00185 * 16 14 2 40 40 H 0.97003 * 120.00504 * 0.02562 * 17 16 14 41 41 H 0.96996 * 120.00266 * 179.97438 * 21 20 18 42 42 H 1.09005 * 115.54888 * 34.41739 * 26 14 2 43 43 H 1.09006 * 117.49160 * 359.97438 * 27 26 14 44 44 H 1.08992 * 117.50380 * 145.01889 * 27 26 14 45 45 H 1.09000 * 117.49874 * 214.97971 * 28 26 14 46 46 H 1.08993 * 117.49476 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1682 0.0709 5 6 1.3999 2.4503 -0.0865 6 7 0.0951 2.6193 -0.0606 7 8 -0.2049 3.7939 -0.1509 8 6 0.8717 4.5654 -0.2489 9 6 1.9482 3.7400 -0.2080 10 6 3.3688 4.2134 -0.3012 11 8 3.3510 5.5724 -0.7657 12 6 2.4590 6.4296 -0.0486 13 6 1.0036 6.0610 -0.3757 14 6 2.1974 -1.2687 -0.0062 15 1 3.2691 -1.0697 -0.0102 16 6 1.8329 -2.0741 1.2426 17 7 2.0808 -1.2624 2.4367 18 6 1.8266 -1.7776 3.6797 19 1 1.4437 -2.7825 3.7798 20 6 2.0610 -1.0083 4.8111 21 7 2.5271 0.2165 4.6892 22 14 1.7135 -1.7108 6.5068 23 1 2.9303 -2.3898 7.0200 24 1 1.3335 -0.6113 7.4298 25 1 0.6004 -2.6898 6.4184 26 6 1.8225 -2.0680 -1.2558 27 6 1.0069 -3.3473 -1.0580 28 6 2.4851 -3.4340 -1.4460 29 1 -0.3632 0.0966 1.0232 30 1 -0.3633 0.8378 -0.5952 31 1 -0.3635 -0.9342 -0.4278 32 1 3.9228 3.5906 -1.0036 33 1 3.8362 4.1657 0.6823 34 1 2.6433 7.4650 -0.3351 35 1 2.6299 6.3142 1.0216 36 1 0.7644 6.3681 -1.3938 37 1 0.3310 6.5523 0.3273 38 1 0.7791 -2.3494 1.2027 39 1 2.4429 -2.9766 1.2837 40 1 2.4251 -0.3600 2.3469 41 1 2.6905 0.7542 5.4797 42 1 1.6225 -1.4768 -2.1495 43 1 0.7377 -3.6197 -0.0374 44 1 0.2706 -3.5979 -1.8216 45 1 2.7206 -3.7416 -2.4648 46 1 3.1883 -3.7630 -0.6810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485837018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:01 Heat of formation + Delta-G solvation = 47.754681 kcal Electronic energy + Delta-G solvation = -30232.284942 eV Core-core repulsion = 26127.902006 eV Total energy + Delta-G solvation = -4104.382936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.10949 -39.90559 -39.00792 -37.78821 -35.05496 -34.28490 -33.81844 -33.26286 -31.20297 -30.62713 -28.28840 -26.84416 -26.30142 -24.83762 -24.20689 -23.56652 -22.55039 -21.92598 -20.99668 -19.89411 -18.69027 -17.94764 -17.54541 -17.09705 -16.79046 -16.37138 -16.12213 -15.58395 -15.20583 -15.11931 -14.97453 -14.43913 -14.03932 -13.83324 -13.78193 -13.39877 -13.20886 -12.98809 -12.89213 -12.65261 -12.36780 -12.19237 -11.90385 -11.54076 -11.34534 -11.29991 -11.09358 -11.05639 -10.81215 -10.75083 -10.39928 -10.37401 -10.10158 -10.00341 -9.90201 -9.70247 -9.66991 -9.21259 -8.86399 -8.31680 -6.90083 -5.72958 -3.02680 1.14658 1.60809 2.71450 3.02455 3.36260 3.43997 3.48483 3.50466 3.52188 3.92599 4.02724 4.29151 4.52868 4.58663 4.68610 4.78793 4.84546 4.93047 5.03743 5.09127 5.13487 5.24064 5.29821 5.35208 5.39754 5.54667 5.56614 5.58330 5.65999 5.73858 5.76856 5.87433 5.90739 5.93386 6.02637 6.24098 6.25742 6.26351 6.36732 6.42683 6.67787 6.83194 6.91047 7.56100 7.70046 7.96868 8.33556 8.44145 9.55690 10.13689 10.48866 11.49191 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.004318 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.474329 B = 6482.796795 C = 8362.785374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.576 5.576 3 C 0.598 3.402 4 O -0.520 6.520 5 C 0.012 3.988 6 N -0.327 5.327 7 O 0.123 5.877 8 C -0.034 4.034 9 C -0.197 4.197 10 C 0.140 3.860 11 O -0.377 6.377 12 C 0.060 3.940 13 C -0.067 4.067 14 C 0.162 3.838 15 H 0.106 0.894 16 C 0.144 3.856 17 N -0.728 5.728 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.161 4.161 27 C -0.184 4.184 28 C -0.170 4.170 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.030 0.970 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 8.892 -15.612 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.307 5.307 3 C 0.383 3.617 4 O -0.394 6.394 5 C -0.146 4.146 6 N -0.033 5.033 7 O 0.054 5.946 8 C -0.099 4.099 9 C -0.203 4.203 10 C 0.064 3.936 11 O -0.295 6.295 12 C -0.018 4.018 13 C -0.105 4.105 14 C 0.059 3.941 15 H 0.124 0.876 16 C 0.016 3.984 17 N -0.372 5.372 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.180 4.180 27 C -0.220 4.220 28 C -0.208 4.208 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.535 7.952 -15.470 17.975 hybrid contribution 0.126 0.015 1.269 1.275 sum -4.409 7.968 -14.200 16.869 Atomic orbital electron populations 1.22046 0.78727 1.02770 1.03198 1.47436 1.07545 1.04882 1.70820 1.16817 0.86190 0.81417 0.77297 1.90784 1.12479 1.86132 1.50046 1.22839 0.89921 0.96059 1.05772 1.74841 1.15442 0.95437 1.17570 1.84653 1.32652 1.12193 1.65088 1.23920 0.85303 0.96794 1.03912 1.21308 0.99424 0.91383 1.08151 1.20988 0.89127 0.81455 1.02036 1.88102 1.62646 1.19603 1.59151 1.22736 0.86655 0.95166 0.97217 1.21019 0.99823 0.84791 1.04866 1.20940 0.97810 0.81891 0.93499 0.87600 1.21112 0.97875 0.93493 0.85917 1.42308 1.78836 1.15793 1.00302 1.19192 1.36438 0.97984 0.83598 0.91253 1.24744 1.02022 0.96264 0.97768 1.69691 1.50981 1.08753 1.28296 0.86209 0.77816 0.77681 0.84590 1.21687 1.21830 1.20790 1.22567 1.05930 0.90227 0.99315 1.23219 0.94078 1.01240 1.03495 1.22959 0.96153 0.99176 1.02501 0.91605 0.90026 0.90952 0.86271 0.89955 0.87051 0.91874 0.87939 0.87783 0.95552 0.95270 0.77996 0.93596 0.87866 0.87405 0.89187 0.88956 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 8.84 59.85 0.53 1.76 16 2 N -0.58 -10.50 2.24 -174.87 -0.39 -10.89 16 3 C 0.60 11.77 7.40 -12.11 -0.09 11.68 16 4 O -0.52 -11.33 15.74 5.37 0.08 -11.24 16 5 C 0.01 0.21 6.85 -82.90 -0.57 -0.36 16 6 N -0.33 -5.35 8.75 33.26 0.29 -5.05 16 7 O 0.12 1.73 11.17 20.05 0.22 1.96 16 8 C -0.03 -0.43 7.50 -35.23 -0.26 -0.70 16 9 C -0.20 -3.00 6.15 -104.93 -0.65 -3.64 16 10 C 0.14 1.93 6.67 35.69 0.24 2.17 16 11 O -0.38 -4.46 10.76 -35.23 -0.38 -4.84 16 12 C 0.06 0.49 6.77 37.49 0.25 0.75 16 13 C -0.07 -0.52 6.56 -27.56 -0.18 -0.70 16 14 C 0.16 2.89 2.58 -67.93 -0.18 2.72 16 15 H 0.11 2.12 6.91 -51.93 -0.36 1.76 16 16 C 0.14 2.97 4.19 -4.04 -0.02 2.96 16 17 N -0.73 -19.28 5.43 -59.91 -0.33 -19.60 16 18 C -0.24 -6.93 9.99 -15.06 -0.15 -7.09 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -29.21 13.06 55.49 0.72 -28.49 16 22 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.16 -2.23 4.98 -90.62 -0.45 -2.69 16 27 C -0.18 -2.27 9.44 -26.69 -0.25 -2.52 16 28 C -0.17 -2.08 9.94 -26.69 -0.27 -2.34 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.24 5.30 -51.93 -0.28 0.97 16 31 H 0.07 1.02 7.14 -51.93 -0.37 0.65 16 32 H 0.12 1.65 8.11 -51.93 -0.42 1.23 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.54 6.31 -51.93 -0.33 0.21 16 39 H 0.03 0.60 7.44 -51.93 -0.39 0.22 16 40 H 0.39 11.15 7.06 -40.82 -0.29 10.86 16 41 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.11 1.47 5.80 -51.93 -0.30 1.17 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 1.28 7.66 -51.93 -0.40 0.88 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -34.69 372.49 -7.79 -42.48 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.48 Total: 10.58 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.13 Total: 1.56 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.30 Total: -64.04 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.07 Total: -14.13 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.69 -7.79 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485837018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.239 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds