Wall clock time and date at job start Tue Mar 31 2020 18:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00263 * 2 1 4 4 O 1.21498 * 119.99779 * 176.13771 * 3 2 1 5 5 C 1.48327 * 120.00241 * 356.13930 * 3 2 1 6 6 N 1.31601 * 127.15462 * 5.89070 * 5 3 2 7 7 O 1.21563 * 111.54768 * 179.97438 * 6 5 3 8 8 C 1.32812 * 111.51776 * 359.97433 * 7 6 5 9 9 C 1.35713 * 106.70274 * 359.83201 * 8 7 6 10 10 C 1.50037 * 123.86508 * 179.48229 * 9 8 7 11 11 O 1.43629 * 107.87506 * 345.80312 * 10 9 8 12 12 C 1.42992 * 114.37796 * 49.80796 * 11 10 9 13 13 C 1.50669 * 130.82838 * 180.19072 * 8 7 6 14 14 C 1.46500 * 119.99764 * 180.28143 * 2 1 3 15 15 H 1.08997 * 109.47571 * 179.72285 * 14 2 1 16 16 C 1.53004 * 109.46824 * 299.72484 * 14 2 1 17 17 N 1.46500 * 109.46845 * 304.99523 * 16 14 2 18 18 C 1.36942 * 119.99931 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00029 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99729 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00581 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99731 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46653 * 90.00466 * 22 20 18 24 24 H 1.48500 * 109.46984 * 210.00169 * 22 20 18 25 25 H 1.48497 * 109.47340 * 330.00299 * 22 20 18 26 26 C 1.52996 * 109.47401 * 59.71883 * 14 2 1 27 27 C 1.53005 * 117.50398 * 248.75237 * 26 14 2 28 28 C 1.53005 * 117.50261 * 180.09142 * 26 14 2 29 29 H 1.09003 * 109.46512 * 275.39553 * 1 2 3 30 30 H 1.09006 * 109.47088 * 35.38808 * 1 2 3 31 31 H 1.08994 * 109.47915 * 155.39466 * 1 2 3 32 32 H 1.09000 * 109.93571 * 226.10878 * 10 9 8 33 33 H 1.08996 * 109.64128 * 105.32455 * 10 9 8 34 34 H 1.08999 * 109.39797 * 169.44688 * 12 11 10 35 35 H 1.08996 * 109.33557 * 49.66244 * 12 11 10 36 36 H 1.08998 * 109.82029 * 283.56553 * 13 8 7 37 37 H 1.08997 * 109.82135 * 44.49928 * 13 8 7 38 38 H 1.08991 * 109.47743 * 65.00088 * 16 14 2 39 39 H 1.09003 * 109.46951 * 185.00185 * 16 14 2 40 40 H 0.97003 * 120.00504 * 0.02562 * 17 16 14 41 41 H 0.96996 * 120.00266 * 179.97438 * 21 20 18 42 42 H 1.09005 * 115.54888 * 34.41739 * 26 14 2 43 43 H 1.09006 * 117.49160 * 359.97438 * 27 26 14 44 44 H 1.08992 * 117.50380 * 145.01889 * 27 26 14 45 45 H 1.09000 * 117.49874 * 214.97971 * 28 26 14 46 46 H 1.08993 * 117.49476 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1682 0.0709 5 6 1.3999 2.4503 -0.0865 6 7 0.0951 2.6193 -0.0606 7 8 -0.2049 3.7939 -0.1509 8 6 0.8717 4.5654 -0.2489 9 6 1.9482 3.7400 -0.2080 10 6 3.3688 4.2134 -0.3012 11 8 3.3510 5.5724 -0.7657 12 6 2.4590 6.4296 -0.0486 13 6 1.0036 6.0610 -0.3757 14 6 2.1974 -1.2687 -0.0062 15 1 3.2691 -1.0697 -0.0102 16 6 1.8329 -2.0741 1.2426 17 7 2.0808 -1.2624 2.4367 18 6 1.8266 -1.7776 3.6797 19 1 1.4437 -2.7825 3.7798 20 6 2.0610 -1.0083 4.8111 21 7 2.5271 0.2165 4.6892 22 14 1.7135 -1.7108 6.5068 23 1 2.9303 -2.3898 7.0200 24 1 1.3335 -0.6113 7.4298 25 1 0.6004 -2.6898 6.4184 26 6 1.8225 -2.0680 -1.2558 27 6 1.0069 -3.3473 -1.0580 28 6 2.4851 -3.4340 -1.4460 29 1 -0.3632 0.0966 1.0232 30 1 -0.3633 0.8378 -0.5952 31 1 -0.3635 -0.9342 -0.4278 32 1 3.9228 3.5906 -1.0036 33 1 3.8362 4.1657 0.6823 34 1 2.6433 7.4650 -0.3351 35 1 2.6299 6.3142 1.0216 36 1 0.7644 6.3681 -1.3938 37 1 0.3310 6.5523 0.3273 38 1 0.7791 -2.3494 1.2027 39 1 2.4429 -2.9766 1.2837 40 1 2.4251 -0.3600 2.3469 41 1 2.6905 0.7542 5.4797 42 1 1.6225 -1.4768 -2.1495 43 1 0.7377 -3.6197 -0.0374 44 1 0.2706 -3.5979 -1.8216 45 1 2.7206 -3.7416 -2.4648 46 1 3.1883 -3.7630 -0.6810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485837018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:00 Heat of formation + Delta-G solvation = 24.389099 kcal Electronic energy + Delta-G solvation = -30233.298149 eV Core-core repulsion = 26127.902006 eV Total energy + Delta-G solvation = -4105.396143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.31357 -41.36122 -39.92312 -39.11383 -36.51875 -36.04858 -35.15646 -34.23356 -33.13970 -31.69492 -29.93141 -28.14972 -27.57657 -26.54912 -25.20724 -24.89437 -24.03591 -23.14421 -22.13256 -21.09116 -20.16162 -19.18492 -19.09516 -18.70599 -18.05969 -17.72062 -17.18862 -16.73969 -16.66834 -16.49292 -16.16998 -15.93537 -15.39327 -15.14693 -15.05091 -14.73875 -14.63165 -14.61337 -14.15150 -13.87972 -13.74738 -13.53109 -13.11877 -13.01608 -12.84573 -12.79020 -12.43646 -12.30045 -12.27622 -12.08049 -12.04938 -11.82814 -11.63157 -11.51668 -11.22806 -11.03804 -10.94032 -10.87009 -10.28706 -9.79564 -9.07429 -7.99181 -5.30310 -0.08029 0.43382 1.41034 1.44151 1.52324 1.54846 1.79011 1.93932 2.50095 2.58191 2.75991 2.87474 3.31843 3.33820 3.50909 3.58679 3.68240 3.81834 3.93949 4.00941 4.04771 4.10534 4.17350 4.19294 4.29265 4.32650 4.35896 4.43210 4.52800 4.63930 4.66252 4.75732 4.80103 4.82986 4.85996 4.89466 4.98429 5.01222 5.04592 5.17047 5.29873 5.40606 5.45785 5.96720 6.10063 6.20100 6.72337 6.92614 7.26024 8.00518 8.24407 9.24190 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.004318 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.474329 B = 6482.796795 C = 8362.785374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.576 5.576 3 C 0.586 3.414 4 O -0.555 6.555 5 C -0.018 4.018 6 N -0.339 5.339 7 O 0.137 5.863 8 C -0.013 4.013 9 C -0.225 4.225 10 C 0.149 3.851 11 O -0.383 6.383 12 C 0.049 3.951 13 C -0.062 4.062 14 C 0.167 3.833 15 H 0.077 0.923 16 C 0.147 3.853 17 N -0.744 5.744 18 C -0.246 4.246 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.265 1.265 26 C -0.170 4.170 27 C -0.170 4.170 28 C -0.161 4.161 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.369 0.631 41 H 0.249 0.751 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 9.205 -16.793 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.306 5.306 3 C 0.373 3.627 4 O -0.433 6.433 5 C -0.174 4.174 6 N -0.043 5.043 7 O 0.065 5.935 8 C -0.078 4.078 9 C -0.231 4.231 10 C 0.072 3.928 11 O -0.302 6.302 12 C -0.028 4.028 13 C -0.100 4.100 14 C 0.064 3.936 15 H 0.095 0.905 16 C 0.020 3.980 17 N -0.386 5.386 18 C -0.377 4.377 19 H 0.098 0.902 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.190 1.190 26 C -0.189 4.189 27 C -0.207 4.207 28 C -0.199 4.199 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.133 0.867 43 H 0.112 0.888 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.437 8.194 -16.680 19.667 hybrid contribution 0.684 -0.017 1.593 1.734 sum -5.753 8.177 -15.087 18.099 Atomic orbital electron populations 1.22042 0.77493 1.04640 1.01724 1.47565 1.08300 1.04686 1.70074 1.17246 0.86135 0.82541 0.76784 1.90741 1.13956 1.86825 1.51760 1.22753 0.90717 0.96071 1.07904 1.74781 1.14793 0.96676 1.18091 1.84616 1.33024 1.11685 1.64161 1.24784 0.83684 0.98580 1.00756 1.21548 1.00813 0.91030 1.09667 1.20727 0.88437 0.82763 1.00909 1.88092 1.63857 1.18592 1.59642 1.23144 0.86381 0.96287 0.96941 1.21385 1.00039 0.81067 1.07479 1.20792 0.96343 0.82089 0.94365 0.90529 1.21273 0.98366 0.93239 0.85147 1.42542 1.78813 1.15639 1.01603 1.19656 1.35144 0.98263 0.84677 0.90199 1.25648 1.02634 0.96675 1.01901 1.69887 1.52954 1.10380 1.28960 0.85083 0.78015 0.76966 0.79344 1.21313 1.22285 1.18971 1.22390 1.08325 0.90691 0.97534 1.23258 0.94782 0.98992 1.03632 1.23063 0.95977 0.97088 1.03725 0.94526 0.88872 0.88436 0.87406 0.91509 0.83092 0.92357 0.85080 0.84476 0.94294 0.94785 0.79918 0.94202 0.86706 0.88777 0.86368 0.86294 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.74 8.84 127.77 1.13 3.87 16 2 N -0.58 -21.87 2.24 -825.46 -1.85 -23.72 16 3 C 0.59 24.62 7.40 86.93 0.64 25.27 16 4 O -0.56 -26.24 15.74 -3.71 -0.06 -26.30 16 5 C -0.02 -0.67 6.85 42.46 0.29 -0.38 16 6 N -0.34 -11.24 8.75 -48.98 -0.43 -11.67 16 7 O 0.14 3.71 11.17 81.74 0.91 4.63 16 8 C -0.01 -0.30 7.50 25.09 0.19 -0.11 16 9 C -0.22 -7.01 6.15 -20.06 -0.12 -7.14 16 10 C 0.15 4.32 6.67 71.03 0.47 4.79 16 11 O -0.38 -8.81 10.76 -148.98 -1.60 -10.41 16 12 C 0.05 0.69 6.77 72.20 0.49 1.18 16 13 C -0.06 -0.76 6.56 30.06 0.20 -0.56 16 14 C 0.17 6.17 2.58 44.99 0.12 6.29 16 15 H 0.08 3.27 6.91 -2.39 -0.02 3.26 16 16 C 0.15 6.15 4.19 86.38 0.36 6.51 16 17 N -0.74 -40.74 5.43 -343.45 -1.87 -42.61 16 18 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 20 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 21 N -0.97 -63.25 13.06 21.65 0.28 -62.97 16 22 Si 0.98 47.86 29.55 68.60 2.03 49.89 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.17 -4.55 4.98 -10.79 -0.05 -4.60 16 27 C -0.17 -3.78 9.44 30.62 0.29 -3.49 16 28 C -0.16 -3.63 9.94 30.62 0.30 -3.32 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 2.86 5.30 -2.38 -0.01 2.84 16 31 H 0.10 2.64 7.14 -2.39 -0.02 2.63 16 32 H 0.11 3.28 8.11 -2.39 -0.02 3.26 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 36 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.04 1.56 6.31 -2.39 -0.02 1.55 16 39 H 0.03 1.41 7.44 -2.39 -0.02 1.40 16 40 H 0.37 22.50 7.06 -92.71 -0.65 21.85 16 41 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 43 H 0.09 2.39 5.80 -2.38 -0.01 2.37 16 44 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.09 2.20 7.66 -2.39 -0.02 2.18 16 Total: -1.00 -79.56 372.49 3.39 -76.16 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.37 Total: 36.37 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 5.61 Total: 10.63 kcal Atomic # 7 Polarization: -137.10 SS G_CDS: -3.86 Total: -140.97 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.75 Total: -32.08 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -79.56 3.39 -76.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485837018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.552 kcal (2) G-P(sol) polarization free energy of solvation -79.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds