Wall clock time and date at job start Tue Mar 31 2020 18:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99874 * 2 1 4 4 C 1.53000 * 109.47318 * 66.04274 * 3 2 1 5 5 N 1.46501 * 109.46817 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99939 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99464 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00265 * 180.02562 * 6 5 4 9 9 H 1.08997 * 115.55144 * 34.27547 * 8 6 5 10 10 C 1.53008 * 117.49768 * 248.61062 * 8 6 5 11 11 C 1.53000 * 117.50233 * 179.97438 * 8 6 5 12 12 H 1.09002 * 117.49174 * 359.97438 * 11 8 6 13 13 C 1.50698 * 117.49848 * 214.98102 * 11 8 6 14 14 C 1.34508 * 125.79045 * 120.00088 * 13 11 8 15 15 C 1.41386 * 106.84311 * 179.97438 * 14 13 11 16 16 C 1.34517 * 106.83467 * 359.97438 * 15 14 13 17 17 O 1.34300 * 125.78467 * 299.68308 * 13 11 8 18 18 C 1.46896 * 111.00504 * 236.04171 * 2 1 3 19 19 C 1.50700 * 109.46942 * 293.95484 * 18 2 1 20 20 O 1.21293 * 120.00282 * 359.97438 * 19 18 2 21 21 N 1.34777 * 120.00075 * 179.97438 * 19 18 2 22 22 C 1.37104 * 120.00173 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99666 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00001 * 180.27893 * 22 21 19 25 25 N 1.31414 * 119.99893 * 359.72318 * 24 22 21 26 26 Si 1.86801 * 119.99957 * 179.72309 * 24 22 21 27 27 H 1.48496 * 109.47031 * 59.99793 * 26 24 22 28 28 H 1.48504 * 109.46970 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47038 * 299.99770 * 26 24 22 30 30 H 1.09007 * 109.47192 * 183.95099 * 1 2 3 31 31 H 1.08994 * 109.47762 * 303.95708 * 1 2 3 32 32 H 1.09004 * 109.47147 * 63.96138 * 1 2 3 33 33 H 1.09001 * 109.47165 * 186.04590 * 3 2 1 34 34 H 1.09001 * 109.46902 * 306.04139 * 3 2 1 35 35 H 1.09003 * 109.46756 * 299.99689 * 4 3 2 36 36 H 1.08993 * 109.47299 * 59.99744 * 4 3 2 37 37 H 0.96998 * 120.00151 * 359.97438 * 5 4 3 38 38 H 1.08992 * 117.49611 * 359.97438 * 10 8 6 39 39 H 1.08996 * 117.49572 * 145.01696 * 10 8 6 40 40 H 1.07999 * 126.58137 * 0.02569 * 14 13 11 41 41 H 1.07995 * 126.58686 * 179.97438 * 15 14 13 42 42 H 1.08003 * 125.78652 * 180.02562 * 16 15 14 43 43 H 1.08994 * 109.47346 * 173.95789 * 18 2 1 44 44 H 1.08998 * 109.47279 * 53.95461 * 18 2 1 45 45 H 0.97000 * 120.00140 * 0.02562 * 21 19 18 46 46 H 0.97004 * 119.99542 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 1.3182 5 7 2.1558 3.4254 1.3178 6 6 1.9544 4.2247 2.3842 7 8 1.3392 3.8112 3.3442 8 6 2.4934 5.6319 2.3837 9 1 2.4970 6.1336 1.4160 10 6 3.6369 5.9508 3.3490 11 6 2.2310 6.4895 3.6233 12 1 1.6681 6.0358 4.4391 13 6 1.9972 7.9633 3.4131 14 6 0.8864 8.6402 3.7553 15 6 1.0952 9.9871 3.3791 16 6 2.3215 10.0526 2.8301 17 8 2.8651 8.8247 2.8577 18 6 1.9955 -0.7660 -1.1375 19 6 1.6370 -2.2205 -0.9726 20 8 1.0055 -2.5833 -0.0027 21 7 2.0182 -3.1181 -1.9029 22 6 1.6916 -4.4412 -1.7532 23 1 1.1292 -4.7642 -0.8896 24 6 2.0895 -5.3675 -2.7093 25 7 2.7743 -4.9745 -3.7599 26 14 1.6512 -7.1714 -2.5015 27 1 0.1745 -7.3194 -2.4514 28 1 2.1872 -7.9465 -3.6492 29 1 2.2430 -7.6823 -1.2389 30 1 -0.3634 -1.0253 0.0708 31 1 -0.3634 0.5740 0.8523 32 1 -0.3633 0.4511 -0.9234 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9273 -0.8310 35 1 0.5470 2.0846 1.4263 36 1 2.0656 1.5017 2.1491 37 1 2.6481 3.7559 0.5502 38 1 3.9989 5.1429 3.9846 39 1 4.3924 6.6626 3.0164 40 1 0.0045 8.2333 4.2276 41 1 0.4032 10.8060 3.5079 42 1 2.7909 10.9424 2.4373 43 1 3.0798 -0.6612 -1.1754 44 1 1.5613 -0.3874 -2.0627 45 1 2.5236 -2.8281 -2.6784 46 1 3.0518 -5.6212 -4.4276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492429296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:11 Heat of formation + Delta-G solvation = -18.476901 kcal Electronic energy + Delta-G solvation = -26973.763714 eV Core-core repulsion = 22866.508761 eV Total energy + Delta-G solvation = -4107.254953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98729 -40.24651 -38.69758 -37.29069 -36.53091 -34.68072 -33.80949 -33.38606 -31.25888 -30.18139 -29.48565 -27.73138 -25.77511 -24.67721 -23.64047 -23.26427 -22.07691 -21.26754 -20.65010 -20.18921 -19.17842 -18.13190 -17.85905 -17.42669 -16.50514 -16.23097 -16.01733 -15.90145 -15.36465 -15.09718 -14.91026 -14.60270 -14.22957 -14.02602 -13.57081 -13.54118 -13.38213 -13.21056 -13.06267 -12.99143 -12.87546 -12.37024 -12.12703 -11.91143 -11.54801 -11.44227 -11.41587 -11.28102 -11.08740 -11.00321 -10.92579 -10.43927 -10.29074 -10.21862 -10.15560 -9.47346 -9.25545 -8.76530 -8.49698 -7.99447 -7.89402 -6.41982 -3.82776 1.22747 2.11087 2.30045 2.48708 2.83253 3.20288 3.25985 3.30561 3.43105 3.89456 3.94762 4.08049 4.19574 4.25950 4.36570 4.54489 4.64184 4.68513 4.82575 4.87312 4.96824 5.10788 5.18138 5.24250 5.37077 5.38013 5.42053 5.52101 5.61094 5.62048 5.68052 5.69859 5.82651 5.85950 5.91360 5.99116 6.08992 6.19138 6.26900 6.55736 6.73080 7.16330 7.24437 7.31242 7.55005 7.96286 8.05877 8.61526 9.17922 9.53845 10.05841 10.75663 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.001433 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.013500 B =19536.773383 C =19714.510783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.723 5.723 6 C 0.544 3.456 7 O -0.536 6.536 8 C -0.176 4.176 9 H 0.127 0.873 10 C -0.136 4.136 11 C -0.048 4.048 12 H 0.149 0.851 13 C 0.016 3.984 14 C -0.199 4.199 15 C -0.212 4.212 16 C -0.042 4.042 17 O -0.176 6.176 18 C 0.047 3.953 19 C 0.443 3.557 20 O -0.576 6.576 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.401 0.599 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.203 0.797 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 29.783 7.987 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.002 4.002 5 N -0.374 5.374 6 C 0.329 3.671 7 O -0.413 6.413 8 C -0.197 4.197 9 H 0.145 0.855 10 C -0.174 4.174 11 C -0.066 4.066 12 H 0.166 0.834 13 C -0.034 4.034 14 C -0.218 4.218 15 C -0.232 4.232 16 C -0.110 4.110 17 O -0.073 6.073 18 C -0.084 4.084 19 C 0.229 3.771 20 O -0.461 6.461 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.220 0.780 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.833 28.763 9.485 30.342 hybrid contribution -0.105 0.080 -1.744 1.749 sum 1.728 28.843 7.741 29.913 Atomic orbital electron populations 1.22644 0.86463 1.04975 0.98965 1.61447 1.08965 1.10375 1.43137 1.22247 1.00798 0.89847 0.95591 1.21383 0.99671 0.80418 0.98778 1.45833 1.57691 1.14318 1.19569 1.19451 0.79455 0.85686 0.82480 1.90735 1.40778 1.75435 1.34312 1.22379 1.05696 0.94415 0.97227 0.85463 1.23118 0.90788 1.03182 1.00268 1.20495 1.01569 0.84972 0.99591 0.83353 1.21331 0.89671 0.90891 1.01530 1.21590 0.99705 0.93680 1.06833 1.21869 0.98194 0.97847 1.05244 1.24045 0.95138 0.86458 1.05313 1.83970 1.42039 1.17688 1.63558 1.21872 1.00676 0.94247 0.91596 1.19702 0.85563 0.86593 0.85284 1.90490 1.43886 1.80093 1.31581 1.41852 1.49423 1.07361 1.21411 1.19659 1.32929 0.82259 1.08065 0.87937 1.25251 0.96753 1.00559 0.95307 1.69606 1.37962 1.35841 1.10967 0.85918 0.78895 0.81687 0.77722 1.19925 1.20995 1.19875 0.88276 0.91894 0.96565 0.90220 0.94549 0.91036 0.90103 0.76513 0.87014 0.86983 0.83232 0.83326 0.77987 0.89312 0.93343 0.77507 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.01 60.06 0.54 0.82 16 2 N -0.52 -8.33 4.50 -244.37 -1.10 -9.43 16 3 C 0.04 0.51 5.07 -3.82 -0.02 0.49 16 4 C 0.12 1.41 5.61 -4.04 -0.02 1.39 16 5 N -0.72 -6.66 5.56 -60.30 -0.33 -7.00 16 6 C 0.54 5.81 7.61 -10.99 -0.08 5.73 16 7 O -0.54 -7.88 16.26 5.56 0.09 -7.79 16 8 C -0.18 -1.36 5.89 -91.77 -0.54 -1.91 16 9 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 10 C -0.14 -0.92 9.87 -26.71 -0.26 -1.18 16 11 C -0.05 -0.39 5.75 -91.76 -0.53 -0.92 16 12 H 0.15 1.30 7.67 -51.93 -0.40 0.90 16 13 C 0.02 0.13 6.80 -35.63 -0.24 -0.11 16 14 C -0.20 -1.65 10.81 -39.70 -0.43 -2.08 16 15 C -0.21 -1.48 10.91 -39.70 -0.43 -1.91 16 16 C -0.04 -0.27 12.09 29.42 0.36 0.09 16 17 O -0.18 -1.46 10.36 5.71 0.06 -1.40 16 18 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 19 C 0.44 10.33 7.51 -10.98 -0.08 10.25 16 20 O -0.58 -15.41 13.89 5.55 0.08 -15.34 16 21 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 22 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 26 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.10 1.95 5.88 -51.93 -0.31 1.65 16 31 H 0.06 0.90 6.30 -51.93 -0.33 0.58 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.83 7.93 -51.93 -0.41 0.41 16 34 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.07 0.92 6.47 -51.93 -0.34 0.58 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.40 2.50 8.47 -40.82 -0.35 2.15 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.11 0.64 7.96 -51.93 -0.41 0.23 16 40 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.20 0.51 8.06 -52.48 -0.42 0.09 16 43 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -34.21 392.30 -8.25 -42.47 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.59 Total: 10.90 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -2.02 Total: 3.53 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.77 Total: -54.23 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.23 Total: -24.53 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.21 -8.25 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492429296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.992 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds