Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99874 * 2 1 4 4 C 1.53000 * 109.47318 * 66.04274 * 3 2 1 5 5 N 1.46501 * 109.46817 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99939 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99464 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00265 * 180.02562 * 6 5 4 9 9 H 1.08997 * 115.55144 * 34.27547 * 8 6 5 10 10 C 1.53008 * 117.49768 * 248.61062 * 8 6 5 11 11 C 1.53000 * 117.50233 * 179.97438 * 8 6 5 12 12 H 1.09002 * 117.49174 * 359.97438 * 11 8 6 13 13 C 1.50698 * 117.49848 * 214.98102 * 11 8 6 14 14 C 1.34508 * 125.79045 * 120.00088 * 13 11 8 15 15 C 1.41386 * 106.84311 * 179.97438 * 14 13 11 16 16 C 1.34517 * 106.83467 * 359.97438 * 15 14 13 17 17 O 1.34300 * 125.78467 * 299.68308 * 13 11 8 18 18 C 1.46896 * 111.00504 * 236.04171 * 2 1 3 19 19 C 1.50700 * 109.46942 * 293.95484 * 18 2 1 20 20 O 1.21293 * 120.00282 * 359.97438 * 19 18 2 21 21 N 1.34777 * 120.00075 * 179.97438 * 19 18 2 22 22 C 1.37104 * 120.00173 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99666 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00001 * 180.27893 * 22 21 19 25 25 N 1.31414 * 119.99893 * 359.72318 * 24 22 21 26 26 Si 1.86801 * 119.99957 * 179.72309 * 24 22 21 27 27 H 1.48496 * 109.47031 * 59.99793 * 26 24 22 28 28 H 1.48504 * 109.46970 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47038 * 299.99770 * 26 24 22 30 30 H 1.09007 * 109.47192 * 183.95099 * 1 2 3 31 31 H 1.08994 * 109.47762 * 303.95708 * 1 2 3 32 32 H 1.09004 * 109.47147 * 63.96138 * 1 2 3 33 33 H 1.09001 * 109.47165 * 186.04590 * 3 2 1 34 34 H 1.09001 * 109.46902 * 306.04139 * 3 2 1 35 35 H 1.09003 * 109.46756 * 299.99689 * 4 3 2 36 36 H 1.08993 * 109.47299 * 59.99744 * 4 3 2 37 37 H 0.96998 * 120.00151 * 359.97438 * 5 4 3 38 38 H 1.08992 * 117.49611 * 359.97438 * 10 8 6 39 39 H 1.08996 * 117.49572 * 145.01696 * 10 8 6 40 40 H 1.07999 * 126.58137 * 0.02569 * 14 13 11 41 41 H 1.07995 * 126.58686 * 179.97438 * 15 14 13 42 42 H 1.08003 * 125.78652 * 180.02562 * 16 15 14 43 43 H 1.08994 * 109.47346 * 173.95789 * 18 2 1 44 44 H 1.08998 * 109.47279 * 53.95461 * 18 2 1 45 45 H 0.97000 * 120.00140 * 0.02562 * 21 19 18 46 46 H 0.97004 * 119.99542 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 1.3182 5 7 2.1558 3.4254 1.3178 6 6 1.9544 4.2247 2.3842 7 8 1.3392 3.8112 3.3442 8 6 2.4934 5.6319 2.3837 9 1 2.4970 6.1336 1.4160 10 6 3.6369 5.9508 3.3490 11 6 2.2310 6.4895 3.6233 12 1 1.6681 6.0358 4.4391 13 6 1.9972 7.9633 3.4131 14 6 0.8864 8.6402 3.7553 15 6 1.0952 9.9871 3.3791 16 6 2.3215 10.0526 2.8301 17 8 2.8651 8.8247 2.8577 18 6 1.9955 -0.7660 -1.1375 19 6 1.6370 -2.2205 -0.9726 20 8 1.0055 -2.5833 -0.0027 21 7 2.0182 -3.1181 -1.9029 22 6 1.6916 -4.4412 -1.7532 23 1 1.1292 -4.7642 -0.8896 24 6 2.0895 -5.3675 -2.7093 25 7 2.7743 -4.9745 -3.7599 26 14 1.6512 -7.1714 -2.5015 27 1 0.1745 -7.3194 -2.4514 28 1 2.1872 -7.9465 -3.6492 29 1 2.2430 -7.6823 -1.2389 30 1 -0.3634 -1.0253 0.0708 31 1 -0.3634 0.5740 0.8523 32 1 -0.3633 0.4511 -0.9234 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9273 -0.8310 35 1 0.5470 2.0846 1.4263 36 1 2.0656 1.5017 2.1491 37 1 2.6481 3.7559 0.5502 38 1 3.9989 5.1429 3.9846 39 1 4.3924 6.6626 3.0164 40 1 0.0045 8.2333 4.2276 41 1 0.4032 10.8060 3.5079 42 1 2.7909 10.9424 2.4373 43 1 3.0798 -0.6612 -1.1754 44 1 1.5613 -0.3874 -2.0627 45 1 2.5236 -2.8281 -2.6784 46 1 3.0518 -5.6212 -4.4276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492429296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = -43.913103 kcal Electronic energy + Delta-G solvation = -26974.866710 eV Core-core repulsion = 22866.508761 eV Total energy + Delta-G solvation = -4108.357949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.52312 -41.09114 -40.35309 -38.38537 -37.50836 -36.00273 -35.49846 -33.92418 -33.26460 -31.03953 -30.29221 -29.11085 -27.14330 -26.08642 -24.44455 -24.11601 -22.62258 -22.32583 -21.37113 -20.97623 -20.85864 -19.84315 -18.77417 -18.12598 -17.69098 -17.35204 -16.91355 -16.85483 -16.55720 -16.29276 -16.11899 -15.90974 -15.55384 -15.35375 -15.03000 -14.69038 -14.45994 -14.03940 -13.77632 -13.76348 -13.74603 -13.43811 -13.42079 -13.03002 -12.95787 -12.90650 -12.58351 -12.55168 -12.40829 -12.16026 -12.08902 -12.04254 -11.64750 -11.44518 -11.05194 -10.83266 -10.28486 -10.15121 -9.98263 -9.30370 -9.23783 -8.44969 -5.93259 0.67737 1.40501 1.40590 1.42526 1.53004 1.66980 1.88020 2.07964 2.08716 2.31309 2.80991 2.89003 3.22162 3.41234 3.46176 3.57896 3.74791 3.84115 4.02988 4.06238 4.11337 4.17259 4.26159 4.36142 4.37296 4.46054 4.53639 4.62966 4.63668 4.65682 4.83794 4.85024 4.89527 4.95725 5.02234 5.05380 5.20138 5.21727 5.33970 5.42674 5.58480 5.85621 6.05212 6.16994 6.19170 6.49075 6.63206 7.15293 7.18035 7.58989 8.15562 8.72077 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.001433 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.013500 B =19536.773383 C =19714.510783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.052 3.948 4 C 0.129 3.871 5 N -0.707 5.707 6 C 0.541 3.459 7 O -0.583 6.583 8 C -0.169 4.169 9 H 0.149 0.851 10 C -0.120 4.120 11 C -0.058 4.058 12 H 0.134 0.866 13 C 0.002 3.998 14 C -0.217 4.217 15 C -0.229 4.229 16 C -0.036 4.036 17 O -0.185 6.185 18 C 0.061 3.939 19 C 0.439 3.561 20 O -0.616 6.616 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.419 0.581 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.166 0.834 42 H 0.240 0.760 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 31.856 6.599 32.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.075 4.075 4 C 0.005 3.995 5 N -0.360 5.360 6 C 0.328 3.672 7 O -0.463 6.463 8 C -0.190 4.190 9 H 0.167 0.833 10 C -0.158 4.158 11 C -0.076 4.076 12 H 0.152 0.848 13 C -0.048 4.048 14 C -0.236 4.236 15 C -0.247 4.247 16 C -0.103 4.103 17 O -0.081 6.081 18 C -0.070 4.070 19 C 0.226 3.774 20 O -0.503 6.503 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.257 0.743 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.184 0.816 42 H 0.256 0.744 43 H 0.133 0.867 44 H 0.091 0.909 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.198 30.873 8.052 32.065 hybrid contribution -0.545 -0.468 -1.254 1.445 sum 2.653 30.405 6.798 31.268 Atomic orbital electron populations 1.22479 0.86937 1.02582 1.00441 1.61328 1.08865 1.13167 1.43072 1.22247 1.01941 0.87371 0.95988 1.21125 0.98746 0.81432 0.98231 1.45650 1.57182 1.13161 1.19960 1.19964 0.78628 0.86721 0.81868 1.90719 1.42944 1.76529 1.36106 1.22331 1.06070 0.92429 0.98209 0.83339 1.23186 0.90373 1.02976 0.99234 1.20399 1.02652 0.85092 0.99492 0.84812 1.21338 0.89983 0.91057 1.02432 1.21852 0.99908 0.94764 1.07095 1.22167 0.99157 0.97719 1.05699 1.24809 0.94919 0.86633 1.03964 1.83961 1.42193 1.18340 1.63642 1.21741 1.02377 0.89886 0.93016 1.20841 0.83738 0.88929 0.83861 1.90474 1.45221 1.81498 1.33062 1.41913 1.50078 1.06973 1.22171 1.19614 1.34399 0.84152 1.08183 0.90458 1.25981 0.96230 1.04142 0.94714 1.69661 1.38004 1.37157 1.11221 0.85025 0.78573 0.76986 0.77969 1.19819 1.19445 1.19866 0.92511 0.90716 0.94784 0.88175 0.92056 0.92405 0.92461 0.74336 0.87140 0.85321 0.83213 0.81623 0.74396 0.86657 0.90932 0.76945 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.01 127.69 1.15 1.90 16 2 N -0.54 -16.67 4.50 -927.06 -4.17 -20.84 16 3 C 0.05 1.07 5.07 86.30 0.44 1.51 16 4 C 0.13 2.86 5.61 86.38 0.48 3.35 16 5 N -0.71 -11.72 5.56 -463.06 -2.57 -14.29 16 6 C 0.54 11.14 7.61 87.66 0.67 11.81 16 7 O -0.58 -17.53 16.26 -3.04 -0.05 -17.58 16 8 C -0.17 -2.38 5.89 -11.54 -0.07 -2.45 16 9 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 10 C -0.12 -1.45 9.87 30.61 0.30 -1.15 16 11 C -0.06 -0.92 5.75 -11.53 -0.07 -0.99 16 12 H 0.13 2.49 7.67 -2.39 -0.02 2.48 16 13 C 0.00 0.03 6.80 24.83 0.17 0.19 16 14 C -0.22 -3.53 10.81 22.19 0.24 -3.29 16 15 C -0.23 -2.85 10.91 22.19 0.24 -2.61 16 16 C -0.04 -0.38 12.09 66.97 0.81 0.43 16 17 O -0.18 -2.72 10.36 -2.48 -0.03 -2.75 16 18 C 0.06 1.99 5.45 85.56 0.47 2.45 16 19 C 0.44 20.63 7.51 87.66 0.66 21.28 16 20 O -0.62 -34.06 13.89 -3.07 -0.04 -34.10 16 21 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 22 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 23 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 24 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 25 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 26 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 30 H 0.06 2.31 5.88 -2.38 -0.01 2.29 16 31 H 0.07 2.15 6.30 -2.39 -0.02 2.13 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.68 7.93 -2.39 -0.02 1.66 16 34 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.06 1.46 6.47 -2.39 -0.02 1.44 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.42 3.88 8.47 -92.71 -0.79 3.10 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.13 1.15 7.96 -2.39 -0.02 1.13 16 40 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.24 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 44 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 45 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 46 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -76.88 392.30 0.10 -76.78 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.49 Total: 33.20 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.77 Total: 14.24 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -8.08 Total: -114.73 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -0.12 Total: -54.43 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -76.88 0.10 -76.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492429296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.864 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds