Wall clock time and date at job start Tue Mar 31 2020 18:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38844 * 119.98649 * 359.73021 * 3 2 1 5 5 C 1.38253 * 120.23908 * 179.72579 * 4 3 2 6 6 C 1.38002 * 120.20285 * 0.54148 * 5 4 3 7 7 C 1.39573 * 119.96881 * 359.73168 * 6 5 4 8 8 C 1.47852 * 120.11760 * 180.02562 * 7 6 5 9 9 O 1.21560 * 119.99619 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00413 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99857 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46552 * 179.97438 * 11 10 8 13 13 N 1.46900 * 109.46721 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00334 * 66.04531 * 13 12 11 15 15 C 1.46899 * 111.00042 * 189.99927 * 13 12 11 16 16 C 1.50699 * 109.47042 * 169.99757 * 15 13 12 17 17 O 1.21283 * 120.00464 * 0.02562 * 16 15 13 18 18 N 1.34784 * 119.99345 * 180.02562 * 16 15 13 19 19 C 1.37101 * 119.99195 * 180.02562 * 18 16 15 20 20 H 1.07989 * 120.00541 * 359.97438 * 19 18 16 21 21 C 1.38959 * 119.99493 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99646 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47267 * 59.99975 * 23 21 19 25 25 H 1.48503 * 109.46728 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47099 * 299.99708 * 23 21 19 27 27 C 1.38455 * 119.98141 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.88067 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.90005 * 180.25714 * 5 4 3 33 33 H 1.07996 * 120.01684 * 179.74800 * 6 5 4 34 34 H 0.96994 * 119.99736 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.47047 * 299.99119 * 11 10 8 36 36 H 1.09001 * 109.46894 * 59.99948 * 11 10 8 37 37 H 1.08999 * 109.47072 * 299.99995 * 12 11 10 38 38 H 1.08991 * 109.46885 * 60.00179 * 12 11 10 39 39 H 1.09000 * 109.46973 * 59.99445 * 14 13 12 40 40 H 1.08998 * 109.47278 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.47011 * 300.00587 * 14 13 12 42 42 H 1.09001 * 109.47025 * 290.00338 * 15 13 12 43 43 H 1.09006 * 109.46734 * 49.99829 * 15 13 12 44 44 H 0.96997 * 120.00422 * 359.97438 * 18 16 15 45 45 H 0.96993 * 119.99654 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.10165 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3753 -0.0057 5 6 1.9115 3.6099 0.0000 6 6 3.2890 3.6932 0.0001 7 6 4.0580 2.5284 0.0001 8 6 5.5340 2.6138 0.0007 9 8 6.2015 1.5979 0.0012 10 7 6.1394 3.8180 0.0008 11 6 7.6020 3.9025 0.0020 12 6 8.0278 5.3721 0.0012 13 7 9.4943 5.4569 0.0018 14 6 10.0527 4.9305 -1.2509 15 6 9.9419 6.8357 0.2392 16 6 11.4299 6.8469 0.4773 17 8 12.0561 5.8086 0.4512 18 7 12.0648 8.0110 0.7191 19 6 13.4187 8.0212 0.9352 20 1 13.9762 7.0967 0.9120 21 6 14.0732 9.2213 1.1850 22 7 13.3946 10.3463 1.2137 23 14 15.9179 9.2353 1.4787 24 1 16.6133 8.6890 0.2857 25 1 16.3701 10.6292 1.7195 26 1 16.2369 8.3991 2.6637 27 6 3.4286 1.2832 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2111 2.3162 -0.0105 32 1 1.3177 4.5119 -0.0002 33 1 3.7718 4.6592 0.0004 34 1 5.6067 4.6285 0.0001 35 1 7.9935 3.4109 0.8926 36 1 7.9951 3.4101 -0.8875 37 1 7.6362 5.8633 -0.8895 38 1 7.6346 5.8647 0.8904 39 1 9.6694 5.5096 -2.0910 40 1 11.1398 5.0056 -1.2240 41 1 9.7630 3.8862 -1.3673 42 1 9.7085 7.4485 -0.6315 43 1 9.4309 7.2380 1.1141 44 1 11.5641 8.8415 0.7396 45 1 13.8515 11.1838 1.3885 46 1 4.0182 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492826423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:56 Heat of formation + Delta-G solvation = -67.816832 kcal Electronic energy + Delta-G solvation = -27100.277726 eV Core-core repulsion = 22990.883233 eV Total energy + Delta-G solvation = -4109.394493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83580 -39.72420 -38.65890 -37.52926 -36.76447 -34.75277 -33.81023 -31.77012 -31.25643 -30.99922 -29.23306 -27.81256 -27.68227 -25.49717 -24.39490 -23.22848 -22.86796 -21.25657 -20.68578 -19.16618 -18.93312 -17.84947 -16.98807 -16.70386 -16.55736 -16.25184 -16.10074 -15.90280 -15.75308 -15.05608 -14.81095 -14.61134 -14.23920 -14.08582 -13.97668 -13.89389 -13.47698 -13.32745 -13.15955 -12.87050 -12.71095 -12.36272 -12.12554 -11.85379 -11.62071 -11.51597 -11.44939 -11.40033 -11.27066 -11.05197 -10.92011 -10.43287 -10.22925 -10.19872 -9.53683 -9.46352 -9.20923 -8.74921 -8.47900 -7.98576 -7.88894 -6.41268 -3.81948 0.39192 0.92836 2.55651 2.58509 2.98966 3.20967 3.26581 3.31275 3.46019 3.90486 4.03038 4.23200 4.25645 4.31886 4.52665 4.60833 4.62606 4.63870 4.80488 4.91919 4.97204 4.98373 5.06251 5.12368 5.25079 5.38288 5.45085 5.63326 5.68788 5.71755 5.82824 5.85247 5.87055 5.89254 5.92849 6.00407 6.09412 6.21714 6.28024 6.56384 6.86843 7.17560 7.25261 7.32554 7.55817 7.96394 8.06724 8.62370 9.18724 9.54697 10.06713 10.76417 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.001512 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.412512 B =18510.448780 C =18963.476472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.120 3.880 4 C -0.186 4.186 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.092 4.092 8 C 0.557 3.443 9 O -0.529 6.529 10 N -0.722 5.722 11 C 0.121 3.879 12 C 0.044 3.956 13 N -0.515 5.515 14 C 0.018 3.982 15 C 0.047 3.953 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.092 4.092 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.399 0.601 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.015 0.985 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.611 -10.628 -3.862 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.075 3.925 4 C -0.205 4.205 5 C -0.104 4.104 6 C -0.143 4.143 7 C -0.095 4.095 8 C 0.344 3.656 9 O -0.406 6.406 10 N -0.374 5.374 11 C -0.002 4.002 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.130 4.130 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.112 4.112 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.234 0.766 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -28.329 -12.335 -3.460 31.091 hybrid contribution -0.343 1.813 -0.467 1.904 sum -28.672 -10.522 -3.927 30.793 Atomic orbital electron populations 1.23099 0.78105 1.04270 1.01398 1.86118 1.21557 1.26476 1.88653 1.18876 0.92020 0.84510 0.97127 1.21450 1.00385 0.92349 1.06346 1.20890 0.94289 0.97287 0.97946 1.21233 0.94088 0.97508 1.01492 1.19711 0.92932 0.93521 1.03343 1.18130 0.87128 0.83571 0.76783 1.90816 1.65943 1.34834 1.49007 1.45827 1.08216 1.08072 1.75323 1.21395 0.77982 0.97073 1.03786 1.22255 0.89671 0.95333 1.01228 1.61437 1.05632 1.20496 1.36341 1.22637 1.03675 0.98912 0.87786 1.21869 0.96552 0.88780 1.01203 1.19704 0.88087 0.84779 0.84574 1.90492 1.67438 1.31898 1.56168 1.41852 1.08686 1.07310 1.62213 1.19660 0.82916 0.95105 1.45215 0.87934 1.25252 1.00539 0.94714 0.97368 1.69602 1.36865 0.98325 1.49603 0.85920 0.82144 0.77042 0.79128 1.19927 1.21004 1.19874 1.20491 0.91348 0.98397 1.00954 0.92493 0.92521 0.87993 0.85000 0.84943 0.85275 0.76582 0.89938 0.90887 0.94512 0.90215 0.96607 0.88341 0.91799 0.93342 0.89310 0.77510 0.91850 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.64 10.49 -19.47 -0.20 -2.84 16 3 C 0.12 1.05 6.68 -39.28 -0.26 0.79 16 4 C -0.19 -1.21 9.03 -39.35 -0.36 -1.57 16 5 C -0.09 -0.51 10.03 -39.66 -0.40 -0.91 16 6 C -0.12 -0.87 9.54 -39.17 -0.37 -1.24 16 7 C -0.09 -0.91 5.87 -104.99 -0.62 -1.52 16 8 C 0.56 6.75 7.77 -12.33 -0.10 6.66 16 9 O -0.53 -8.53 16.35 5.31 0.09 -8.44 16 10 N -0.72 -7.15 5.51 -61.24 -0.34 -7.49 16 11 C 0.12 1.45 5.60 -4.04 -0.02 1.43 16 12 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 13 N -0.51 -8.36 4.50 -244.36 -1.10 -9.46 16 14 C 0.02 0.28 8.96 60.07 0.54 0.82 16 15 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 16 C 0.44 10.35 7.47 -10.98 -0.08 10.26 16 17 O -0.58 -15.44 13.91 5.56 0.08 -15.36 16 18 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.09 -0.96 9.53 -39.02 -0.37 -1.33 16 28 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 29 H 0.06 0.16 7.64 -51.93 -0.40 -0.23 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.13 0.53 6.28 -52.49 -0.33 0.20 16 32 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.13 0.58 6.40 -52.49 -0.34 0.25 16 34 H 0.40 2.68 6.50 -40.82 -0.27 2.41 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 37 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.95 5.82 -51.93 -0.30 1.64 16 41 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 42 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.15 1.63 7.65 -52.49 -0.40 1.23 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -34.73 384.91 -7.67 -42.40 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.30 Total: 9.41 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.34 Total: 7.84 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.77 Total: -54.79 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.04 Total: -26.64 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.73 -7.67 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492826423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.421 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds