Wall clock time and date at job start Tue Mar 31 2020 18:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38844 * 119.98649 * 359.73021 * 3 2 1 5 5 C 1.38253 * 120.23908 * 179.72579 * 4 3 2 6 6 C 1.38002 * 120.20285 * 0.54148 * 5 4 3 7 7 C 1.39573 * 119.96881 * 359.73168 * 6 5 4 8 8 C 1.47852 * 120.11760 * 180.02562 * 7 6 5 9 9 O 1.21560 * 119.99619 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00413 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99857 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46552 * 179.97438 * 11 10 8 13 13 N 1.46900 * 109.46721 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00334 * 66.04531 * 13 12 11 15 15 C 1.46899 * 111.00042 * 189.99927 * 13 12 11 16 16 C 1.50699 * 109.47042 * 169.99757 * 15 13 12 17 17 O 1.21283 * 120.00464 * 0.02562 * 16 15 13 18 18 N 1.34784 * 119.99345 * 180.02562 * 16 15 13 19 19 C 1.37101 * 119.99195 * 180.02562 * 18 16 15 20 20 H 1.07989 * 120.00541 * 359.97438 * 19 18 16 21 21 C 1.38959 * 119.99493 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99646 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47267 * 59.99975 * 23 21 19 25 25 H 1.48503 * 109.46728 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47099 * 299.99708 * 23 21 19 27 27 C 1.38455 * 119.98141 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.88067 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.90005 * 180.25714 * 5 4 3 33 33 H 1.07996 * 120.01684 * 179.74800 * 6 5 4 34 34 H 0.96994 * 119.99736 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.47047 * 299.99119 * 11 10 8 36 36 H 1.09001 * 109.46894 * 59.99948 * 11 10 8 37 37 H 1.08999 * 109.47072 * 299.99995 * 12 11 10 38 38 H 1.08991 * 109.46885 * 60.00179 * 12 11 10 39 39 H 1.09000 * 109.46973 * 59.99445 * 14 13 12 40 40 H 1.08998 * 109.47278 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.47011 * 300.00587 * 14 13 12 42 42 H 1.09001 * 109.47025 * 290.00338 * 15 13 12 43 43 H 1.09006 * 109.46734 * 49.99829 * 15 13 12 44 44 H 0.96997 * 120.00422 * 359.97438 * 18 16 15 45 45 H 0.96993 * 119.99654 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.10165 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3753 -0.0057 5 6 1.9115 3.6099 0.0000 6 6 3.2890 3.6932 0.0001 7 6 4.0580 2.5284 0.0001 8 6 5.5340 2.6138 0.0007 9 8 6.2015 1.5979 0.0012 10 7 6.1394 3.8180 0.0008 11 6 7.6020 3.9025 0.0020 12 6 8.0278 5.3721 0.0012 13 7 9.4943 5.4569 0.0018 14 6 10.0527 4.9305 -1.2509 15 6 9.9419 6.8357 0.2392 16 6 11.4299 6.8469 0.4773 17 8 12.0561 5.8086 0.4512 18 7 12.0648 8.0110 0.7191 19 6 13.4187 8.0212 0.9352 20 1 13.9762 7.0967 0.9120 21 6 14.0732 9.2213 1.1850 22 7 13.3946 10.3463 1.2137 23 14 15.9179 9.2353 1.4787 24 1 16.6133 8.6890 0.2857 25 1 16.3701 10.6292 1.7195 26 1 16.2369 8.3991 2.6637 27 6 3.4286 1.2832 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2111 2.3162 -0.0105 32 1 1.3177 4.5119 -0.0002 33 1 3.7718 4.6592 0.0004 34 1 5.6067 4.6285 0.0001 35 1 7.9935 3.4109 0.8926 36 1 7.9951 3.4101 -0.8875 37 1 7.6362 5.8633 -0.8895 38 1 7.6346 5.8647 0.8904 39 1 9.6694 5.5096 -2.0910 40 1 11.1398 5.0056 -1.2240 41 1 9.7630 3.8862 -1.3673 42 1 9.7085 7.4485 -0.6315 43 1 9.4309 7.2380 1.1141 44 1 11.5641 8.8415 0.7396 45 1 13.8515 11.1838 1.3885 46 1 4.0182 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492826423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:55 Heat of formation + Delta-G solvation = -95.235972 kcal Electronic energy + Delta-G solvation = -27101.466709 eV Core-core repulsion = 22990.883233 eV Total energy + Delta-G solvation = -4110.583476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52010 -40.55822 -40.27358 -38.31550 -37.96639 -36.04934 -35.57654 -33.25873 -32.41671 -31.66572 -30.27617 -29.03273 -28.17845 -27.04339 -25.73588 -24.19995 -23.44857 -22.33971 -21.51608 -20.94304 -19.83554 -19.61744 -17.86077 -17.63639 -17.44023 -17.08291 -16.93873 -16.69948 -16.66553 -16.53239 -16.24500 -16.02449 -15.55569 -15.30307 -15.02041 -14.75877 -14.52428 -14.45716 -14.40957 -13.76055 -13.53734 -13.43312 -13.19243 -13.02704 -12.97079 -12.75163 -12.56564 -12.54117 -12.40217 -12.16027 -12.09125 -12.03710 -11.96927 -11.43778 -11.19086 -10.31715 -10.26726 -10.00427 -9.97322 -9.30566 -9.22508 -8.44412 -5.92499 -0.25905 0.37018 1.40919 1.42826 1.53236 1.76416 1.82730 2.08956 2.30155 2.39488 2.80078 2.91282 3.22804 3.44058 3.61835 3.78126 3.84064 4.04794 4.06335 4.13779 4.23608 4.27581 4.37662 4.41197 4.43564 4.47169 4.50335 4.55182 4.65063 4.65493 4.74377 4.85750 4.87648 4.94621 5.18456 5.22315 5.24069 5.29904 5.34176 5.43335 5.62639 5.86754 6.06207 6.17890 6.37512 6.45072 6.64062 7.10988 7.16074 7.59926 8.16629 8.72663 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.001512 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.412512 B =18510.448780 C =18963.476472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.108 3.892 4 C -0.178 4.178 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.109 4.109 8 C 0.554 3.446 9 O -0.583 6.583 10 N -0.703 5.703 11 C 0.128 3.872 12 C 0.053 3.947 13 N -0.540 5.540 14 C 0.024 3.976 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.274 1.274 27 C -0.122 4.122 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.418 0.582 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.701 -8.264 -4.002 33.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.063 3.937 4 C -0.196 4.196 5 C -0.097 4.097 6 C -0.136 4.136 7 C -0.112 4.112 8 C 0.342 3.658 9 O -0.464 6.464 10 N -0.356 5.356 11 C 0.004 3.996 12 C -0.075 4.075 13 N -0.265 5.265 14 C -0.124 4.124 15 C -0.070 4.070 16 C 0.226 3.774 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.176 0.824 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.134 0.866 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -31.475 -9.921 -3.603 33.198 hybrid contribution 0.484 1.009 -0.435 1.200 sum -30.991 -8.913 -4.038 32.499 Atomic orbital electron populations 1.23401 0.75928 1.05708 1.02709 1.86085 1.23918 1.26827 1.88743 1.18972 0.91545 0.85620 0.97562 1.21838 1.01788 0.91635 1.04360 1.21365 0.94013 0.98370 0.95959 1.21565 0.94697 0.97378 0.99920 1.19572 0.91507 0.94566 1.05596 1.18595 0.88196 0.83279 0.75696 1.90784 1.67250 1.36691 1.51625 1.45586 1.07427 1.08354 1.74239 1.21164 0.79093 0.97336 1.02023 1.22252 0.86679 0.94981 1.03582 1.61310 1.08618 1.19975 1.36610 1.22471 1.01095 1.00025 0.88819 1.21737 0.91761 0.90053 1.03439 1.20858 0.90720 0.83492 0.82323 1.90476 1.69264 1.33270 1.57274 1.41908 1.08041 1.08167 1.63008 1.19610 0.84506 0.94742 1.47485 0.90501 1.25973 1.04481 0.94062 0.96524 1.69655 1.38299 0.98650 1.49416 0.85034 0.77197 0.77599 0.78775 1.19841 1.19425 1.19904 1.20440 0.92475 0.97934 1.03360 0.91118 0.91082 0.86741 0.82082 0.81172 0.82364 0.74291 0.92441 0.92226 0.91721 0.88003 0.94514 0.92549 0.90971 0.90793 0.86587 0.76920 0.91336 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.72 10.49 -92.59 -0.97 -6.69 16 3 C 0.11 1.85 6.68 22.47 0.15 2.00 16 4 C -0.18 -1.78 9.03 22.42 0.20 -1.58 16 5 C -0.08 -0.61 10.03 22.22 0.22 -0.39 16 6 C -0.12 -1.28 9.54 22.54 0.21 -1.07 16 7 C -0.11 -2.13 5.87 -20.10 -0.12 -2.24 16 8 C 0.55 13.69 7.77 86.79 0.67 14.37 16 9 O -0.58 -20.20 16.35 -3.90 -0.06 -20.27 16 10 N -0.70 -12.92 5.51 -465.95 -2.57 -15.49 16 11 C 0.13 2.98 5.60 86.38 0.48 3.46 16 12 C 0.05 1.08 5.07 86.31 0.44 1.52 16 13 N -0.54 -16.75 4.50 -927.03 -4.17 -20.93 16 14 C 0.02 0.76 8.96 127.69 1.14 1.91 16 15 C 0.06 1.99 5.45 85.56 0.47 2.45 16 16 C 0.44 20.62 7.47 87.66 0.66 21.27 16 17 O -0.62 -34.19 13.91 -3.04 -0.04 -34.23 16 18 N -0.57 -29.06 5.29 -306.98 -1.62 -30.69 16 19 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 20 H 0.08 4.67 7.16 -2.92 -0.02 4.65 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -49.11 13.05 21.67 0.28 -48.83 16 23 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C -0.12 -2.70 9.53 22.63 0.22 -2.48 16 28 H 0.07 0.25 7.67 -2.39 -0.02 0.23 16 29 H 0.07 0.24 7.64 -2.39 -0.02 0.22 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.16 0.61 6.28 -2.91 -0.02 0.59 16 32 H 0.17 0.09 8.06 -2.91 -0.02 0.07 16 33 H 0.16 0.69 6.40 -2.91 -0.02 0.67 16 34 H 0.42 4.22 6.50 -92.71 -0.60 3.62 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.56 6.55 -2.39 -0.02 1.54 16 37 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.10 1.69 7.93 -2.39 -0.02 1.67 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 2.30 5.82 -2.39 -0.01 2.28 16 41 H 0.07 2.14 6.47 -2.39 -0.02 2.12 16 42 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 43 H 0.12 3.18 7.93 -2.38 -0.02 3.16 16 44 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.12 3.09 7.65 -2.91 -0.02 3.06 16 Total: -1.00 -80.84 384.91 -0.29 -81.13 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.30 Total: 28.74 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 7.14 Total: 22.22 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -8.08 Total: -115.93 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -1.08 Total: -61.19 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -80.84 -0.29 -81.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492826423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.111 kcal (2) G-P(sol) polarization free energy of solvation -80.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds