Wall clock time and date at job start Tue Mar 31 2020 18:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46907 * 110.99459 * 2 1 4 4 C 1.50696 * 109.47203 * 66.04596 * 3 2 1 5 5 O 1.21291 * 119.99957 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99901 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99893 * 179.97438 * 6 4 3 8 8 H 1.07997 * 120.00052 * 0.02562 * 7 6 4 9 9 C 1.38955 * 119.99705 * 180.02562 * 7 6 4 10 10 N 1.31405 * 119.99975 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99628 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47225 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46724 * 119.99992 * 11 9 7 14 14 H 1.48489 * 109.47222 * 240.00116 * 11 9 7 15 15 C 1.46900 * 111.00269 * 236.04917 * 2 1 3 16 16 C 1.53001 * 109.47091 * 293.95133 * 15 2 1 17 17 H 1.09003 * 110.88227 * 57.42425 * 16 15 2 18 18 C 1.55151 * 111.03712 * 181.33110 * 16 15 2 19 19 C 1.54337 * 103.01768 * 153.39716 * 18 16 15 20 20 N 1.47017 * 107.26553 * 338.13760 * 19 18 16 21 21 C 1.34777 * 125.64910 * 178.85634 * 20 19 18 22 22 O 1.21610 * 120.00238 * 179.69270 * 21 20 19 23 23 C 1.47386 * 119.99921 * 359.68888 * 21 20 19 24 24 C 1.47018 * 127.19244 * 179.71545 * 23 21 20 25 25 C 1.34177 * 105.95616 * 179.83195 * 24 23 21 26 26 O 1.34223 * 109.11814 * 0.43323 * 25 24 23 27 27 C 1.33647 * 110.91191 * 359.70722 * 26 25 24 28 28 C 1.47418 * 108.70589 * 358.58803 * 20 19 18 29 29 H 1.09001 * 109.46563 * 183.95351 * 1 2 3 30 30 H 1.08996 * 109.47095 * 303.95355 * 1 2 3 31 31 H 1.09002 * 109.47275 * 63.95803 * 1 2 3 32 32 H 1.09006 * 109.46663 * 186.04708 * 3 2 1 33 33 H 1.08999 * 109.47075 * 306.04371 * 3 2 1 34 34 H 0.97004 * 120.00178 * 0.02562 * 6 4 3 35 35 H 0.97005 * 119.99669 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47281 * 173.94606 * 15 2 1 37 37 H 1.09007 * 109.47113 * 53.94603 * 15 2 1 38 38 H 1.09001 * 110.71961 * 271.94712 * 18 16 15 39 39 H 1.08998 * 110.72387 * 35.05106 * 18 16 15 40 40 H 1.09007 * 109.98873 * 218.66362 * 19 18 16 41 41 H 1.08996 * 109.78392 * 97.49661 * 19 18 16 42 42 H 1.08002 * 127.02192 * 359.96876 * 24 23 21 43 43 H 1.07997 * 125.43847 * 180.10388 * 25 24 23 44 44 H 1.07999 * 125.80306 * 180.02562 * 27 26 25 45 45 H 1.09000 * 110.37106 * 143.19386 * 28 20 19 46 46 H 1.09002 * 110.37042 * 265.52172 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0187 3.3200 1.5236 7 6 1.6920 3.9348 2.7047 8 1 1.1291 3.3992 3.4547 9 6 2.0853 5.2472 2.9367 10 7 2.7698 5.8991 2.0238 11 14 1.6408 6.0848 4.5461 12 1 0.8737 5.1420 5.3994 13 1 2.8825 6.4919 5.2516 14 1 0.8134 7.2858 4.2672 15 6 1.9955 -0.7659 -1.1376 16 6 1.6316 -2.2426 -0.9704 17 1 0.5525 -2.3694 -0.8841 18 6 2.2000 -3.0919 -2.1378 19 6 2.3623 -4.4897 -1.5039 20 7 2.4364 -4.3024 -0.0476 21 6 2.5577 -5.2861 0.8657 22 8 2.6154 -5.0131 2.0494 23 6 2.6205 -6.6926 0.4299 24 6 2.7570 -7.8821 1.2830 25 6 2.7655 -8.9342 0.4504 26 8 2.6576 -8.4955 -0.8135 27 6 2.5698 -7.1624 -0.8498 28 6 2.3625 -2.8600 0.2480 29 1 -0.3632 -1.0253 0.0709 30 1 -0.3633 0.5740 0.8524 31 1 -0.3634 0.4512 -0.9233 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 2.5240 3.8012 0.8498 35 1 3.0440 6.8154 2.1857 36 1 3.0798 -0.6609 -1.1757 37 1 1.5611 -0.3872 -2.0629 38 1 1.4968 -3.1228 -2.9702 39 1 3.1646 -2.7029 -2.4638 40 1 3.2781 -4.9582 -1.8645 41 1 1.5023 -5.1106 -1.7546 42 1 2.8326 -7.9046 2.3602 43 1 2.8513 -9.9685 0.7491 44 1 2.4744 -6.5596 -1.7408 45 1 1.7909 -2.6884 1.1601 46 1 3.3640 -2.4402 0.3422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494113621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:02 Heat of formation + Delta-G solvation = -31.475182 kcal Electronic energy + Delta-G solvation = -28309.243598 eV Core-core repulsion = 24201.424998 eV Total energy + Delta-G solvation = -4107.818600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.88036 -40.16775 -38.67488 -37.73667 -36.10896 -33.86768 -33.31622 -32.21200 -31.21200 -30.36661 -29.47649 -27.79500 -26.68529 -25.12764 -24.31812 -22.48761 -22.24970 -21.53614 -20.19178 -20.02327 -19.12090 -17.89903 -17.76167 -16.83961 -16.71151 -16.42057 -15.89791 -15.59101 -15.20052 -15.11018 -14.62999 -14.46084 -14.30891 -13.92720 -13.67294 -13.50389 -13.42491 -13.24389 -13.03651 -12.81451 -12.73344 -12.27567 -12.13216 -11.78911 -11.58571 -11.37497 -11.31211 -11.17463 -11.06764 -10.88748 -10.67109 -10.31818 -10.19801 -10.14260 -10.12967 -9.46022 -9.17535 -8.83310 -8.42860 -7.95226 -7.83567 -6.39434 -3.79818 1.03638 1.76042 2.50656 2.80386 3.16444 3.18406 3.28915 3.36491 3.85751 3.93992 4.17030 4.19142 4.27222 4.27863 4.48733 4.56577 4.70194 4.83639 5.00077 5.08936 5.16490 5.17155 5.26682 5.32098 5.33347 5.41569 5.52534 5.53940 5.61429 5.68326 5.72818 5.78230 5.92225 5.95399 6.00473 6.03958 6.09786 6.19688 6.30685 6.57598 6.59502 7.26479 7.30740 7.38943 7.58138 8.03461 8.09615 8.64742 9.21232 9.57448 10.09513 10.78460 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.001994 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.631771 B =14039.230755 C =14859.407220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.518 5.518 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.575 6.575 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.065 3.935 16 C -0.095 4.095 17 H 0.088 0.912 18 C -0.127 4.127 19 C 0.090 3.910 20 N -0.617 5.617 21 C 0.597 3.403 22 O -0.529 6.529 23 C -0.228 4.228 24 C -0.165 4.165 25 C -0.042 4.042 26 O -0.177 6.177 27 C 0.004 3.996 28 C 0.124 3.876 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.014 0.986 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.160 0.840 43 H 0.209 0.791 44 H 0.219 0.781 45 H 0.090 0.910 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -24.562 -14.663 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.242 5.242 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.459 6.459 6 N -0.203 5.203 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.064 4.064 16 C -0.115 4.115 17 H 0.106 0.894 18 C -0.166 4.166 19 C -0.034 4.034 20 N -0.352 5.352 21 C 0.387 3.613 22 O -0.406 6.406 23 C -0.232 4.232 24 C -0.184 4.184 25 C -0.108 4.108 26 O -0.072 6.072 27 C -0.066 4.066 28 C 0.002 3.998 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.032 0.968 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.225 0.775 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.178 0.822 43 H 0.225 0.775 44 H 0.235 0.765 45 H 0.108 0.892 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.612 -25.102 -13.173 28.355 hybrid contribution -0.054 1.331 -0.313 1.368 sum 0.558 -23.771 -13.485 27.336 Atomic orbital electron populations 1.22571 0.86797 1.01899 1.01427 1.61565 1.08719 1.12871 1.41044 1.21860 1.00631 0.88863 0.97144 1.19742 0.85429 0.82918 0.88967 1.90497 1.43803 1.64574 1.47051 1.41876 1.49512 1.10811 1.18066 1.19751 1.32714 0.95397 0.94750 0.87861 1.25255 0.96890 0.96679 0.99214 1.69619 1.38260 1.12164 1.34394 0.85807 0.78203 0.78995 0.81397 1.19212 1.20771 1.20828 1.22076 1.00363 0.91795 0.92119 1.22384 1.00795 0.94301 0.93975 0.89400 1.22698 1.02568 0.93343 0.97946 1.22336 1.01028 0.98907 0.81087 1.48378 1.73032 1.07575 1.06220 1.16894 0.76670 0.82972 0.84803 1.90837 1.50088 1.83517 1.16166 1.21545 1.13481 0.94515 0.93673 1.22822 1.04827 0.89755 1.01034 1.23970 1.06612 1.00071 0.80155 1.83811 1.70429 1.22290 1.30656 1.25260 1.00801 0.81191 0.99346 1.22232 1.01165 0.77149 0.99221 0.92172 0.88585 0.96796 0.89424 0.93489 0.77541 0.91987 0.90503 0.94460 0.89680 0.89972 0.90987 0.91076 0.82213 0.77452 0.76502 0.89163 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.98 60.07 0.54 0.87 16 2 N -0.52 -8.21 4.32 -244.36 -1.06 -9.27 16 3 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 4 C 0.44 10.44 7.47 -10.99 -0.08 10.36 16 5 O -0.58 -15.54 13.91 5.55 0.08 -15.46 16 6 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 11 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.07 0.73 4.41 -3.82 -0.02 0.71 16 16 C -0.10 -0.93 2.90 -88.47 -0.26 -1.19 16 17 H 0.09 0.90 6.54 -51.93 -0.34 0.56 16 18 C -0.13 -0.79 6.42 -24.89 -0.16 -0.95 16 19 C 0.09 0.59 5.01 -3.06 -0.02 0.58 16 20 N -0.62 -7.02 3.33 -171.80 -0.57 -7.59 16 21 C 0.60 8.32 7.84 -12.54 -0.10 8.22 16 22 O -0.53 -9.77 17.24 5.27 0.09 -9.68 16 23 C -0.23 -2.49 6.28 -103.27 -0.65 -3.14 16 24 C -0.16 -1.59 11.01 -37.46 -0.41 -2.01 16 25 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 26 O -0.18 -1.37 10.52 7.65 0.08 -1.29 16 27 C 0.00 0.03 10.64 30.08 0.32 0.35 16 28 C 0.12 1.57 6.20 -2.53 -0.02 1.55 16 29 H 0.06 0.84 6.45 -51.93 -0.33 0.50 16 30 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 33 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.08 0.80 7.89 -51.93 -0.41 0.40 16 37 H 0.04 0.38 8.12 -51.92 -0.42 -0.05 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 40 H 0.07 0.35 7.07 -51.93 -0.37 -0.02 16 41 H 0.07 0.35 6.86 -51.93 -0.36 0.00 16 42 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.21 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.22 0.92 4.46 -52.49 -0.23 0.69 16 45 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 46 H 0.07 0.96 8.00 -51.93 -0.42 0.54 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -35.97 377.45 -7.18 -43.16 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.37 Total: 8.33 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -0.76 Total: 8.21 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.96 Total: -55.22 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.25 Total: -26.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.97 -7.18 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494113621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.683 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds