Wall clock time and date at job start Tue Mar 31 2020 18:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35673 * 117.00123 * 2 1 4 4 C 1.38916 * 119.68378 * 180.02562 * 3 2 1 5 5 C 1.38387 * 119.11011 * 179.97438 * 4 3 2 6 6 C 1.38825 * 118.48518 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.35693 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47140 * 89.99854 * 7 6 5 9 9 C 1.42903 * 113.99629 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46878 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 H 1.09005 * 110.64601 * 323.31752 * 13 12 10 15 15 C 1.55158 * 110.71835 * 199.98033 * 13 12 10 16 16 C 1.54912 * 101.57976 * 277.14009 * 15 13 12 17 17 N 1.47426 * 104.83453 * 322.98776 * 16 15 13 18 18 C 1.36932 * 125.65151 * 204.08915 * 17 16 15 19 19 H 1.08000 * 120.00154 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00053 * 0.04975 * 18 17 16 21 21 N 1.31621 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46769 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47316 * 119.99726 * 22 20 18 25 25 H 1.48499 * 109.47113 * 239.99928 * 22 20 18 26 26 C 1.47031 * 108.70086 * 24.13161 * 17 16 15 27 27 C 1.38054 * 119.28921 * 0.25443 * 6 5 4 28 28 N 1.31964 * 120.83024 * 359.45144 * 27 6 5 29 29 H 1.09005 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 300.00395 * 1 2 3 31 31 H 1.08998 * 109.46531 * 60.00726 * 1 2 3 32 32 H 1.07995 * 120.44761 * 359.96835 * 4 3 2 33 33 H 1.07999 * 120.75505 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.46405 * 329.99839 * 7 6 5 35 35 H 1.09004 * 109.47198 * 210.00323 * 7 6 5 36 36 H 1.09002 * 109.47382 * 59.99956 * 9 8 7 37 37 H 1.09001 * 109.46938 * 299.99942 * 9 8 7 38 38 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 39 39 H 1.08992 * 111.00731 * 35.21274 * 15 13 12 40 40 H 1.09002 * 111.00443 * 159.07135 * 15 13 12 41 41 H 1.09000 * 110.36719 * 204.15113 * 16 15 13 42 42 H 1.09000 * 110.36766 * 81.82879 * 16 15 13 43 43 H 0.97004 * 119.99646 * 180.02562 * 21 20 18 44 44 H 1.08994 * 109.87601 * 239.52514 * 26 17 16 45 45 H 1.08997 * 109.88344 * 118.35570 * 26 17 16 46 46 H 1.07993 * 119.58112 * 179.72524 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 3.2506 3.6491 -0.0016 7 6 3.8768 5.0198 -0.0016 8 8 4.0753 5.4528 -1.3489 9 6 4.6679 6.7482 -1.4616 10 6 4.8306 7.1012 -2.9177 11 8 4.4737 6.3204 -3.7744 12 7 5.3717 8.2849 -3.2677 13 6 5.5292 8.6282 -4.6832 14 1 5.7964 7.7461 -5.2652 15 6 6.5869 9.7493 -4.8617 16 6 5.7452 11.0187 -4.5787 17 7 4.4235 10.7340 -5.1665 18 6 3.5152 11.6716 -5.5800 19 1 2.5699 11.3597 -5.9990 20 6 3.8096 13.0228 -5.4610 21 7 4.9616 13.4030 -4.9503 22 14 2.5707 14.3020 -6.0258 23 1 1.3638 13.6205 -6.5589 24 1 2.1877 15.1612 -4.8768 25 1 3.1761 15.1409 -7.0911 26 6 4.2418 9.2765 -5.2343 27 6 1.8771 3.5096 0.0038 28 7 1.3187 2.3140 -0.0015 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3632 0.5137 -0.8901 32 1 4.0229 0.3695 -0.0004 33 1 5.1255 2.5946 -0.0011 34 1 4.8371 4.9804 0.5127 35 1 3.2181 5.7202 0.5119 36 1 5.6447 6.7444 -0.9778 37 1 4.0260 7.4847 -0.9783 38 1 5.6568 8.9094 -2.5825 39 1 7.3930 9.6452 -4.1355 40 1 6.9783 9.7589 -5.8789 41 1 6.1952 11.8872 -5.0598 42 1 5.6555 11.1828 -3.5049 43 1 5.1671 14.3473 -4.8669 44 1 4.0860 8.9703 -6.2687 45 1 3.3877 8.9807 -4.6252 46 1 1.2518 4.3901 0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494761341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:23 Heat of formation + Delta-G solvation = -71.021359 kcal Electronic energy + Delta-G solvation = -27671.792042 eV Core-core repulsion = 23562.258591 eV Total energy + Delta-G solvation = -4109.533451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67316 -40.98813 -39.41589 -38.89582 -38.04115 -35.47810 -33.82719 -33.62775 -32.59391 -31.11564 -29.70454 -28.68702 -28.06649 -26.60014 -26.16753 -24.47695 -22.95551 -22.27679 -21.98476 -21.25278 -19.43397 -19.00310 -18.35020 -18.23275 -17.79003 -17.15856 -17.02832 -16.94778 -16.59761 -16.40474 -15.78366 -15.56538 -15.47633 -15.24467 -15.06515 -14.66053 -14.38098 -14.28665 -14.11845 -13.81454 -13.52810 -13.38865 -13.08582 -12.93595 -12.83104 -12.81623 -12.43186 -12.31532 -12.14236 -12.08498 -11.99369 -11.83489 -11.45789 -10.95986 -10.81128 -10.78180 -10.75536 -10.56649 -10.07392 -9.51709 -8.88852 -7.78527 -5.21807 0.03511 0.22925 1.46651 1.47393 1.57622 1.62618 1.89478 2.10796 2.48819 2.64844 3.20245 3.30814 3.32261 3.65722 3.76757 3.84380 3.90936 3.95039 3.98633 4.07854 4.18905 4.29365 4.31506 4.37261 4.39189 4.42519 4.52526 4.54928 4.66127 4.72527 4.75967 4.77733 4.90502 4.92202 5.01685 5.06713 5.25779 5.42482 5.44632 5.57816 5.65520 5.81917 6.08053 6.17350 6.32634 6.62490 6.77416 7.12126 7.28826 7.77404 8.40362 9.22874 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.001839 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.600780 B =15221.890225 C =15935.121995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.320 6.320 3 C 0.300 3.700 4 C -0.198 4.198 5 C -0.018 4.018 6 C -0.185 4.185 7 C 0.109 3.891 8 O -0.393 6.393 9 C 0.051 3.949 10 C 0.507 3.493 11 O -0.577 6.577 12 N -0.702 5.702 13 C 0.147 3.853 14 H 0.093 0.907 15 C -0.131 4.131 16 C 0.153 3.847 17 N -0.622 5.622 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.061 4.061 21 N -0.942 5.942 22 Si 0.977 3.023 23 H -0.274 1.274 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.125 3.875 27 C 0.147 3.853 28 N -0.563 5.563 29 H 0.124 0.876 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.414 0.586 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.002 0.998 43 H 0.249 0.751 44 H 0.022 0.978 45 H 0.009 0.991 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -21.692 16.449 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.122 3.878 4 C -0.218 4.218 5 C -0.043 4.043 6 C -0.188 4.188 7 C 0.033 3.967 8 O -0.312 6.312 9 C -0.028 4.028 10 C 0.295 3.705 11 O -0.456 6.456 12 N -0.355 5.355 13 C 0.041 3.959 14 H 0.111 0.889 15 C -0.170 4.170 16 C 0.029 3.971 17 N -0.349 5.349 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.254 4.254 21 N -0.592 5.592 22 Si 0.806 3.194 23 H -0.199 1.199 24 H -0.216 1.216 25 H -0.216 1.216 26 C -0.001 4.001 27 C -0.008 4.008 28 N -0.287 5.287 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.179 0.821 33 H 0.188 0.812 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.250 0.750 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.027 0.973 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.487 -22.533 15.669 27.450 hybrid contribution -0.282 1.456 -0.101 1.486 sum 0.205 -21.078 15.567 26.204 Atomic orbital electron populations 1.23038 0.75989 1.04647 1.02079 1.86216 1.24271 1.24524 1.87766 1.20271 0.90405 0.84867 0.92252 1.21367 0.91559 1.00738 1.08153 1.21718 1.01995 0.90066 0.90562 1.20633 0.94647 0.96419 1.07076 1.21383 1.01232 0.91153 0.82941 1.88054 1.82786 1.32772 1.27632 1.22290 1.01918 0.86831 0.91793 1.21028 0.76429 0.80990 0.92084 1.90700 1.50169 1.51087 1.53642 1.45773 1.62998 1.18483 1.08243 1.21697 0.94718 0.97398 0.82066 0.88904 1.23175 0.96851 0.93777 1.03162 1.21796 0.84260 0.96206 0.94869 1.44786 1.17189 1.00150 1.72742 1.19400 0.96923 0.87005 1.33646 0.91137 1.25532 0.99490 0.98484 1.01876 1.70012 1.23111 1.14536 1.51545 0.85025 0.78245 0.78900 0.77219 1.19870 1.21618 1.21607 1.21776 0.96461 0.84673 0.97222 1.22664 0.93093 0.93760 0.91307 1.67331 1.41621 0.99331 1.20389 0.85829 0.92380 0.93077 0.82084 0.81187 0.89058 0.90047 0.86154 0.87809 0.74955 0.87825 0.90187 0.90677 0.97993 0.94157 0.95981 0.97258 0.81109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 113.37 1.18 1.73 16 2 O -0.32 -6.52 10.48 -89.91 -0.94 -7.46 16 3 C 0.30 6.54 7.49 84.79 0.63 7.18 16 4 C -0.20 -3.43 10.04 22.47 0.23 -3.21 16 5 C -0.02 -0.28 9.85 22.45 0.22 -0.06 16 6 C -0.19 -3.24 5.53 -19.77 -0.11 -3.34 16 7 C 0.11 1.52 6.09 71.24 0.43 1.95 16 8 O -0.39 -8.98 9.86 -129.94 -1.28 -10.26 16 9 C 0.05 0.94 6.42 71.24 0.46 1.40 16 10 C 0.51 14.88 7.90 87.66 0.69 15.58 16 11 O -0.58 -22.95 16.22 16.01 0.26 -22.69 16 12 N -0.70 -19.77 5.11 -436.91 -2.23 -22.00 16 13 C 0.15 5.03 3.25 46.18 0.15 5.18 16 14 H 0.09 3.16 7.69 -2.38 -0.02 3.14 16 15 C -0.13 -4.33 6.64 31.99 0.21 -4.12 16 16 C 0.15 6.96 5.87 86.86 0.51 7.47 16 17 N -0.62 -31.78 3.39 -691.97 -2.35 -34.13 16 18 C -0.24 -13.61 10.27 84.03 0.86 -12.75 16 19 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 21 N -0.94 -54.09 10.09 21.65 0.22 -53.87 16 22 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 C 0.13 5.51 6.98 86.73 0.61 6.12 16 27 C 0.15 2.95 10.85 84.63 0.92 3.87 16 28 N -0.56 -12.97 9.22 -308.96 -2.85 -15.82 16 29 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.09 0.74 8.09 -2.38 -0.02 0.72 16 35 H 0.08 0.83 8.09 -2.38 -0.02 0.81 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.41 9.48 8.62 -92.71 -0.80 8.68 16 39 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.08 3.96 5.87 -2.39 -0.01 3.94 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 44 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.01 0.44 8.04 -2.39 -0.02 0.42 16 46 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -79.27 388.22 0.50 -78.77 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.19 Total: 15.95 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 7.46 Total: 24.06 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -7.21 Total: -125.82 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.96 Total: -40.40 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -79.27 0.50 -78.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494761341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.749 kcal (2) G-P(sol) polarization free energy of solvation -79.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds