Wall clock time and date at job start Tue Mar 31 2020 18:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 120.00154 * 2 1 4 4 C 1.34783 * 120.00143 * 180.02562 * 2 1 3 5 5 O 1.21525 * 119.99471 * 357.81839 * 4 2 1 6 6 C 1.48029 * 119.99842 * 178.09385 * 4 2 1 7 7 C 1.39554 * 120.00416 * 23.89514 * 6 4 2 8 8 C 1.37812 * 119.99954 * 179.76471 * 7 6 4 9 9 C 1.39552 * 120.00177 * 0.50532 * 8 7 6 10 10 C 1.48036 * 120.00081 * 179.72040 * 9 8 7 11 11 O 1.21535 * 120.00005 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00072 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99881 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47082 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.46974 * 305.00054 * 14 13 12 16 16 O 1.42898 * 109.47225 * 64.99702 * 14 13 12 17 17 C 1.53000 * 109.47447 * 184.99898 * 14 13 12 18 18 N 1.46494 * 109.47330 * 179.97438 * 17 14 13 19 19 C 1.36942 * 120.00288 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99263 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00290 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00035 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99871 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47398 * 89.99941 * 23 21 19 25 25 H 1.48507 * 109.46988 * 209.99977 * 23 21 19 26 26 H 1.48497 * 109.47532 * 329.99681 * 23 21 19 27 27 C 1.39555 * 120.00227 * 359.74964 * 9 8 7 28 28 C 1.37817 * 119.99619 * 359.97438 * 27 9 8 29 29 H 1.09002 * 109.47498 * 269.99560 * 1 2 3 30 30 H 1.09002 * 109.47226 * 29.99504 * 1 2 3 31 31 H 1.09001 * 109.47397 * 149.99913 * 1 2 3 32 32 H 1.08998 * 109.47463 * 207.49828 * 3 2 1 33 33 H 1.08998 * 109.47157 * 327.50436 * 3 2 1 34 34 H 1.09004 * 109.46498 * 87.50211 * 3 2 1 35 35 H 1.08003 * 119.99466 * 0.02562 * 7 6 4 36 36 H 1.08004 * 120.00120 * 180.24839 * 8 7 6 37 37 H 0.96991 * 119.99763 * 0.02562 * 12 10 9 38 38 H 1.09004 * 109.47347 * 300.00109 * 13 12 10 39 39 H 1.08995 * 109.47250 * 59.99783 * 13 12 10 40 40 H 0.96698 * 113.99814 * 60.00559 * 16 14 13 41 41 H 1.08998 * 109.47183 * 300.00285 * 17 14 13 42 42 H 1.09007 * 109.47054 * 59.99689 * 17 14 13 43 43 H 0.96999 * 120.00034 * 0.02562 * 18 17 14 44 44 H 0.97007 * 120.00446 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.00468 * 180.02562 * 27 9 8 46 46 H 1.08006 * 120.00208 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5318 -2.2193 0.0391 6 6 3.6186 -1.1675 -0.0432 7 6 4.3299 -0.0549 0.4081 8 6 5.7076 -0.0572 0.3729 9 6 6.3911 -1.1678 -0.1239 10 6 7.8708 -1.1677 -0.1674 11 8 8.4660 -2.1348 -0.6005 12 7 8.5579 -0.0952 0.2731 13 6 10.0223 -0.0954 0.2305 14 6 10.5488 1.2299 0.7849 15 1 10.0981 2.0575 0.2372 16 8 10.2108 1.3349 2.1694 17 6 12.0696 1.2811 0.6259 18 7 12.5737 2.5502 1.1562 19 6 13.9154 2.8220 1.1220 20 1 14.6019 2.1008 0.7036 21 6 14.3929 4.0248 1.6240 22 7 15.6824 4.2863 1.5907 23 14 13.2054 5.2724 2.3468 24 1 13.0423 5.0162 3.8005 25 1 13.7416 6.6422 2.1428 26 1 11.8882 5.1510 1.6720 27 6 5.6797 -2.2783 -0.5801 28 6 4.3021 -2.2784 -0.5396 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 3.1686 1.1276 -0.4745 33 1 1.6285 2.0168 -0.5521 34 1 2.3403 1.6057 1.0268 35 1 3.8008 0.8062 0.7889 36 1 6.2582 0.8023 0.7259 37 1 8.0829 0.6764 0.6191 38 1 10.4033 -0.9186 0.8349 39 1 10.3558 -0.2166 -0.8001 40 1 10.5791 0.6294 2.7187 41 1 12.5203 0.4534 1.1736 42 1 12.3274 1.2009 -0.4302 43 1 11.9571 3.1978 1.5322 44 1 16.0162 5.1267 1.9418 45 1 6.2086 -3.1381 -0.9641 46 1 3.7514 -3.1376 -0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497097069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:30 Heat of formation + Delta-G solvation = -45.726561 kcal Electronic energy + Delta-G solvation = -27611.119998 eV Core-core repulsion = 23502.683411 eV Total energy + Delta-G solvation = -4108.436587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14858 -40.12558 -38.44125 -37.69257 -36.31078 -34.70598 -34.21620 -32.35052 -31.76900 -31.42576 -29.51240 -28.55823 -27.32037 -25.87002 -24.15852 -23.11410 -22.24209 -21.61581 -20.88414 -20.35389 -18.44647 -17.81183 -17.75916 -17.01626 -16.53961 -16.35905 -16.18814 -15.80322 -15.33351 -15.00902 -14.88082 -14.74880 -14.54492 -14.32871 -13.84372 -13.76753 -13.72811 -13.41388 -13.29537 -13.00904 -12.99494 -12.77279 -12.62819 -12.44374 -12.24253 -12.06130 -11.34402 -11.34201 -10.91115 -10.88221 -10.52986 -10.30338 -10.20254 -9.82126 -9.60961 -9.60150 -9.48994 -9.30738 -9.23172 -8.96981 -7.30139 -5.81298 -3.17877 0.01513 0.80741 2.02529 2.36880 2.72257 2.83212 3.35841 3.40261 3.41185 3.43439 3.83063 4.15359 4.30100 4.34759 4.46080 4.50929 4.56054 4.62791 4.67603 4.74166 4.77664 4.88061 5.00147 5.03971 5.05651 5.14280 5.26876 5.37749 5.41148 5.47099 5.57300 5.64956 5.69766 5.73070 5.77583 5.83671 5.85497 6.13885 6.25670 6.36763 6.49099 6.68995 7.21986 7.56226 7.70142 7.92201 7.94396 8.36992 9.16462 9.88220 10.07711 11.36649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.001940 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.864320 B =14432.699006 C =15708.700991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.615 5.615 3 C 0.051 3.949 4 C 0.557 3.443 5 O -0.531 6.531 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.094 4.094 9 C -0.105 4.105 10 C 0.552 3.448 11 O -0.533 6.533 12 N -0.715 5.715 13 C 0.089 3.911 14 C 0.085 3.915 15 H 0.105 0.895 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.749 5.749 19 C -0.249 4.249 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.889 3.111 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.067 4.067 28 C -0.068 4.068 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.377 0.623 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.366 0.634 44 H 0.260 0.740 45 H 0.145 0.855 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.372 -7.813 -3.684 32.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.349 5.349 3 C -0.091 4.091 4 C 0.346 3.654 5 O -0.408 6.408 6 C -0.117 4.117 7 C -0.140 4.140 8 C -0.113 4.113 9 C -0.108 4.108 10 C 0.339 3.661 11 O -0.411 6.411 12 N -0.367 5.367 13 C -0.035 4.035 14 C 0.025 3.975 15 H 0.122 0.878 16 O -0.363 6.363 17 C 0.002 3.998 18 N -0.395 5.395 19 C -0.379 4.379 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.719 3.281 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.086 4.086 28 C -0.087 4.087 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.177 0.823 36 H 0.154 0.846 37 H 0.240 0.760 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.225 0.775 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.200 0.800 44 H 0.070 0.930 45 H 0.163 0.837 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -31.324 -8.533 -4.227 32.739 hybrid contribution -0.570 1.014 0.881 1.459 sum -31.894 -7.520 -3.346 32.939 Atomic orbital electron populations 1.21710 0.78401 1.03412 1.02243 1.47601 1.07409 1.06210 1.73634 1.22749 0.98988 0.85198 1.02201 1.18428 0.87210 0.83413 0.76374 1.90788 1.69707 1.30868 1.49464 1.20013 0.92718 0.95973 1.02988 1.22276 0.94370 0.98327 0.98984 1.21352 0.94308 0.97679 0.97967 1.20222 0.93247 0.95848 1.01523 1.18302 0.86872 0.82907 0.78039 1.90797 1.70410 1.33954 1.45928 1.45843 1.07706 1.18890 1.64233 1.22148 0.79031 0.99232 1.03069 1.22451 0.96483 0.95774 0.82796 0.87760 1.86532 1.77007 1.54589 1.18132 1.21166 0.89906 0.90454 0.98242 1.42548 1.05769 1.16731 1.74487 1.19042 0.82245 1.02165 1.34448 0.89252 1.24678 0.95641 0.97771 1.00945 1.69705 1.11540 1.25103 1.51628 0.86487 0.80684 0.81498 0.79440 1.21011 1.21807 1.20315 1.21294 0.93280 0.97815 0.96241 1.21232 0.93696 0.97240 0.96540 0.92383 0.90876 0.90332 0.88311 0.90740 0.91472 0.82265 0.84636 0.76008 0.90565 0.89930 0.77484 0.94958 0.94441 0.80034 0.92988 0.83722 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.46 59.84 0.63 1.04 16 2 N -0.62 -3.92 3.27 -190.58 -0.62 -4.54 16 3 C 0.05 0.16 8.76 59.85 0.52 0.68 16 4 C 0.56 5.20 7.53 -12.24 -0.09 5.11 16 5 O -0.53 -6.78 16.19 5.34 0.09 -6.69 16 6 C -0.11 -0.94 5.63 -104.90 -0.59 -1.53 16 7 C -0.12 -0.75 7.54 -39.25 -0.30 -1.04 16 8 C -0.09 -0.64 9.53 -39.25 -0.37 -1.01 16 9 C -0.11 -0.98 5.88 -104.90 -0.62 -1.59 16 10 C 0.55 6.40 7.78 -12.24 -0.10 6.30 16 11 O -0.53 -8.08 16.34 5.33 0.09 -8.00 16 12 N -0.71 -7.16 5.45 -61.19 -0.33 -7.49 16 13 C 0.09 1.01 5.31 -4.04 -0.02 0.99 16 14 C 0.08 1.11 3.09 -26.73 -0.08 1.02 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 16 O -0.56 -7.40 13.03 -35.23 -0.46 -7.86 16 17 C 0.13 2.28 5.92 -4.05 -0.02 2.26 16 18 N -0.75 -17.15 5.30 -59.91 -0.32 -17.47 16 19 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 20 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.02 13.97 55.49 0.78 -28.25 16 23 Si 0.89 21.94 27.73 -169.99 -4.71 17.22 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 27 C -0.07 -0.62 9.58 -39.24 -0.38 -1.00 16 28 C -0.07 -0.59 9.57 -39.24 -0.38 -0.97 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.18 7.92 -51.93 -0.41 -0.23 16 31 H 0.08 0.49 7.45 -51.93 -0.39 0.11 16 32 H 0.10 0.30 4.65 -51.93 -0.24 0.06 16 33 H 0.07 0.12 7.93 -51.93 -0.41 -0.30 16 34 H 0.07 0.12 7.35 -51.93 -0.38 -0.26 16 35 H 0.16 0.55 4.02 -52.48 -0.21 0.34 16 36 H 0.14 0.63 6.39 -52.48 -0.34 0.29 16 37 H 0.40 3.23 6.49 -40.82 -0.27 2.96 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.38 4.13 9.05 45.56 0.41 4.54 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.37 8.34 5.41 -40.82 -0.22 8.11 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.15 1.32 7.64 -52.49 -0.40 0.92 16 46 H 0.14 1.16 7.83 -52.48 -0.41 0.74 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -37.37 381.90 -7.18 -44.55 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.39 Total: 9.54 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.05 Total: 3.22 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.50 Total: -57.75 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.29 Total: -22.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.37 -7.18 -44.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497097069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.172 kcal (2) G-P(sol) polarization free energy of solvation -37.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds