Wall clock time and date at job start Tue Mar 31 2020 18:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 120.00154 * 2 1 4 4 C 1.34783 * 120.00143 * 180.02562 * 2 1 3 5 5 O 1.21525 * 119.99471 * 357.81839 * 4 2 1 6 6 C 1.48029 * 119.99842 * 178.09385 * 4 2 1 7 7 C 1.39554 * 120.00416 * 23.89514 * 6 4 2 8 8 C 1.37812 * 119.99954 * 179.76471 * 7 6 4 9 9 C 1.39552 * 120.00177 * 0.50532 * 8 7 6 10 10 C 1.48036 * 120.00081 * 179.72040 * 9 8 7 11 11 O 1.21535 * 120.00005 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00072 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99881 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47082 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.46974 * 305.00054 * 14 13 12 16 16 O 1.42898 * 109.47225 * 64.99702 * 14 13 12 17 17 C 1.53000 * 109.47447 * 184.99898 * 14 13 12 18 18 N 1.46494 * 109.47330 * 179.97438 * 17 14 13 19 19 C 1.36942 * 120.00288 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99263 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00290 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00035 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99871 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47398 * 89.99941 * 23 21 19 25 25 H 1.48507 * 109.46988 * 209.99977 * 23 21 19 26 26 H 1.48497 * 109.47532 * 329.99681 * 23 21 19 27 27 C 1.39555 * 120.00227 * 359.74964 * 9 8 7 28 28 C 1.37817 * 119.99619 * 359.97438 * 27 9 8 29 29 H 1.09002 * 109.47498 * 269.99560 * 1 2 3 30 30 H 1.09002 * 109.47226 * 29.99504 * 1 2 3 31 31 H 1.09001 * 109.47397 * 149.99913 * 1 2 3 32 32 H 1.08998 * 109.47463 * 207.49828 * 3 2 1 33 33 H 1.08998 * 109.47157 * 327.50436 * 3 2 1 34 34 H 1.09004 * 109.46498 * 87.50211 * 3 2 1 35 35 H 1.08003 * 119.99466 * 0.02562 * 7 6 4 36 36 H 1.08004 * 120.00120 * 180.24839 * 8 7 6 37 37 H 0.96991 * 119.99763 * 0.02562 * 12 10 9 38 38 H 1.09004 * 109.47347 * 300.00109 * 13 12 10 39 39 H 1.08995 * 109.47250 * 59.99783 * 13 12 10 40 40 H 0.96698 * 113.99814 * 60.00559 * 16 14 13 41 41 H 1.08998 * 109.47183 * 300.00285 * 17 14 13 42 42 H 1.09007 * 109.47054 * 59.99689 * 17 14 13 43 43 H 0.96999 * 120.00034 * 0.02562 * 18 17 14 44 44 H 0.97007 * 120.00446 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.00468 * 180.02562 * 27 9 8 46 46 H 1.08006 * 120.00208 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5318 -2.2193 0.0391 6 6 3.6186 -1.1675 -0.0432 7 6 4.3299 -0.0549 0.4081 8 6 5.7076 -0.0572 0.3729 9 6 6.3911 -1.1678 -0.1239 10 6 7.8708 -1.1677 -0.1674 11 8 8.4660 -2.1348 -0.6005 12 7 8.5579 -0.0952 0.2731 13 6 10.0223 -0.0954 0.2305 14 6 10.5488 1.2299 0.7849 15 1 10.0981 2.0575 0.2372 16 8 10.2108 1.3349 2.1694 17 6 12.0696 1.2811 0.6259 18 7 12.5737 2.5502 1.1562 19 6 13.9154 2.8220 1.1220 20 1 14.6019 2.1008 0.7036 21 6 14.3929 4.0248 1.6240 22 7 15.6824 4.2863 1.5907 23 14 13.2054 5.2724 2.3468 24 1 13.0423 5.0162 3.8005 25 1 13.7416 6.6422 2.1428 26 1 11.8882 5.1510 1.6720 27 6 5.6797 -2.2783 -0.5801 28 6 4.3021 -2.2784 -0.5396 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 3.1686 1.1276 -0.4745 33 1 1.6285 2.0168 -0.5521 34 1 2.3403 1.6057 1.0268 35 1 3.8008 0.8062 0.7889 36 1 6.2582 0.8023 0.7259 37 1 8.0829 0.6764 0.6191 38 1 10.4033 -0.9186 0.8349 39 1 10.3558 -0.2166 -0.8001 40 1 10.5791 0.6294 2.7187 41 1 12.5203 0.4534 1.1736 42 1 12.3274 1.2009 -0.4302 43 1 11.9571 3.1978 1.5322 44 1 16.0162 5.1267 1.9418 45 1 6.2086 -3.1381 -0.9641 46 1 3.7514 -3.1376 -0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497097069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:29 Heat of formation + Delta-G solvation = -76.521556 kcal Electronic energy + Delta-G solvation = -27612.455369 eV Core-core repulsion = 23502.683411 eV Total energy + Delta-G solvation = -4109.771958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79561 -40.94351 -39.29232 -38.69098 -36.87267 -36.20276 -35.44502 -33.48774 -32.96379 -32.32534 -30.76757 -28.94416 -28.00201 -27.09388 -25.05546 -23.98640 -23.49959 -22.83399 -21.76728 -20.96713 -19.82317 -19.16312 -18.38260 -17.77139 -17.48649 -17.23074 -16.92045 -16.62039 -16.51895 -15.97603 -15.96594 -15.57786 -15.37588 -15.33653 -15.03064 -14.88992 -14.45868 -14.37487 -14.22904 -14.03667 -13.75325 -13.62355 -13.40012 -13.28705 -13.25205 -13.13943 -12.79247 -12.71320 -12.21391 -11.86916 -11.84414 -11.81331 -11.39075 -11.10152 -11.00706 -10.87734 -10.36301 -10.12881 -10.00885 -9.75323 -9.30144 -8.02075 -5.36076 -0.65474 0.23077 1.30922 1.41289 1.45144 1.52460 1.86946 1.96873 1.99864 2.50469 2.74099 3.27463 3.29221 3.35218 3.53799 3.61370 3.72794 3.80895 4.00500 4.10931 4.13371 4.19462 4.23191 4.27459 4.41992 4.48590 4.55996 4.61115 4.69342 4.73279 4.84779 4.89069 4.90844 4.94829 5.04785 5.13519 5.18358 5.19228 5.28146 5.39782 5.64388 5.75204 6.18081 6.21067 6.42599 6.77045 6.95223 7.08660 7.09345 7.84337 8.04210 9.19145 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.001940 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.864320 B =14432.699006 C =15708.700991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.610 5.610 3 C 0.040 3.960 4 C 0.548 3.452 5 O -0.580 6.580 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.083 4.083 9 C -0.118 4.118 10 C 0.553 3.447 11 O -0.577 6.577 12 N -0.701 5.701 13 C 0.098 3.902 14 C 0.107 3.893 15 H 0.115 0.885 16 O -0.562 6.562 17 C 0.122 3.878 18 N -0.751 5.751 19 C -0.239 4.239 20 H 0.055 0.945 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.962 3.038 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.249 1.249 27 C -0.077 4.077 28 C -0.078 4.078 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.195 0.805 36 H 0.166 0.834 37 H 0.417 0.583 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.388 0.612 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.370 0.630 44 H 0.258 0.742 45 H 0.135 0.865 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.206 -5.415 -2.806 34.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.341 5.341 3 C -0.101 4.101 4 C 0.337 3.663 5 O -0.461 6.461 6 C -0.123 4.123 7 C -0.124 4.124 8 C -0.101 4.101 9 C -0.121 4.121 10 C 0.341 3.659 11 O -0.458 6.458 12 N -0.353 5.353 13 C -0.026 4.026 14 C 0.047 3.953 15 H 0.133 0.867 16 O -0.369 6.369 17 C -0.005 4.005 18 N -0.397 5.397 19 C -0.370 4.370 20 H 0.073 0.927 21 C -0.257 4.257 22 N -0.634 5.634 23 Si 0.789 3.211 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.173 1.173 27 C -0.096 4.096 28 C -0.097 4.097 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.211 0.789 36 H 0.183 0.817 37 H 0.256 0.744 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.238 0.762 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.204 0.796 44 H 0.067 0.933 45 H 0.153 0.847 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -34.217 -6.110 -3.347 34.919 hybrid contribution 0.297 0.215 0.567 0.675 sum -33.919 -5.895 -2.780 34.540 Atomic orbital electron populations 1.21847 0.77725 1.03906 1.02752 1.47775 1.08129 1.06520 1.71716 1.23031 0.99151 0.83926 1.03991 1.18668 0.87639 0.83713 0.76236 1.90761 1.70556 1.32699 1.52066 1.20105 0.92447 0.96570 1.03172 1.22642 0.94079 0.98319 0.97364 1.21643 0.94597 0.97395 0.96462 1.20130 0.91899 0.97001 1.03091 1.18620 0.87754 0.82391 0.77162 1.90778 1.71401 1.35606 1.48006 1.45661 1.07044 1.18997 1.63614 1.21924 0.79865 0.98140 1.02709 1.22140 0.93031 0.96904 0.83210 0.86736 1.86511 1.76900 1.55391 1.18093 1.21400 0.93294 0.88047 0.97759 1.42502 1.03819 1.18695 1.74715 1.19038 0.84151 1.01156 1.32630 0.92712 1.25560 0.97471 1.00331 1.02335 1.69895 1.14028 1.25819 1.53685 0.85311 0.79292 0.77859 0.78654 1.20566 1.22446 1.17301 1.21230 0.93434 0.97975 0.96967 1.21205 0.93497 0.97730 0.97261 0.91868 0.87856 0.92368 0.88067 0.88524 0.89274 0.78895 0.81685 0.74434 0.90742 0.90312 0.76235 0.94829 0.94455 0.79582 0.93326 0.84729 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.46 127.77 1.34 1.98 16 2 N -0.61 -6.37 3.27 -875.14 -2.87 -9.24 16 3 C 0.04 0.07 8.76 127.77 1.12 1.19 16 4 C 0.55 9.81 7.53 86.84 0.65 10.47 16 5 O -0.58 -15.28 16.19 -3.79 -0.06 -15.35 16 6 C -0.12 -1.82 5.63 -20.04 -0.11 -1.93 16 7 C -0.11 -0.94 7.54 22.49 0.17 -0.77 16 8 C -0.08 -0.83 9.53 22.49 0.21 -0.61 16 9 C -0.12 -2.01 5.88 -20.04 -0.12 -2.13 16 10 C 0.55 12.06 7.78 86.84 0.68 12.74 16 11 O -0.58 -17.50 16.34 -3.83 -0.06 -17.56 16 12 N -0.70 -12.12 5.45 -465.79 -2.54 -14.66 16 13 C 0.10 2.01 5.31 86.38 0.46 2.47 16 14 C 0.11 2.47 3.09 30.59 0.09 2.56 16 15 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 16 O -0.56 -12.84 13.03 -148.98 -1.94 -14.79 16 17 C 0.12 4.06 5.92 86.38 0.51 4.57 16 18 N -0.75 -33.06 5.30 -343.46 -1.82 -34.88 16 19 C -0.24 -13.34 10.47 84.03 0.88 -12.46 16 20 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 22 N -0.98 -62.49 13.97 21.65 0.30 -62.18 16 23 Si 0.96 44.50 27.73 68.60 1.90 46.41 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 27 C -0.08 -1.43 9.58 22.49 0.22 -1.22 16 28 C -0.08 -1.38 9.57 22.49 0.22 -1.17 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.19 7.92 -2.39 -0.02 0.18 16 31 H 0.06 0.73 7.45 -2.39 -0.02 0.71 16 32 H 0.10 0.17 4.65 -2.39 -0.01 0.15 16 33 H 0.10 -0.17 7.93 -2.39 -0.02 -0.18 16 34 H 0.09 -0.15 7.35 -2.39 -0.02 -0.17 16 35 H 0.19 0.36 4.02 -2.91 -0.01 0.35 16 36 H 0.17 0.66 6.39 -2.91 -0.02 0.64 16 37 H 0.42 4.94 6.49 -92.71 -0.60 4.34 16 38 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.39 7.23 9.05 -74.06 -0.67 6.56 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.37 15.66 5.41 -92.71 -0.50 15.15 16 44 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 45 H 0.13 2.67 7.64 -2.91 -0.02 2.65 16 46 H 0.13 2.44 7.83 -2.91 -0.02 2.42 16 Total: -1.00 -84.12 381.90 -1.09 -85.20 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.78 Total: 24.69 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.78 Total: 12.35 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -6.92 Total: -120.96 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -2.07 Total: -47.70 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.41 kcal Total: -84.12 -1.09 -85.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497097069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.683 kcal (2) G-P(sol) polarization free energy of solvation -84.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds