Wall clock time and date at job start Tue Mar 31 2020 18:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35696 * 119.44277 * 2 1 4 4 C 1.35262 * 121.00212 * 179.97438 * 3 2 1 5 5 C 1.41151 * 119.86835 * 0.27957 * 4 3 2 6 6 C 1.48461 * 120.53769 * 179.71882 * 5 4 3 7 7 O 1.21477 * 119.99640 * 179.97438 * 6 5 4 8 8 N 1.34771 * 120.00013 * 359.97438 * 6 5 4 9 9 C 1.46504 * 119.99748 * 175.64952 * 8 6 5 10 10 C 1.53002 * 109.49833 * 300.67955 * 9 8 6 11 11 O 1.42904 * 109.47202 * 305.33721 * 10 9 8 12 12 C 1.53034 * 109.49629 * 60.74384 * 9 8 6 13 13 C 1.53040 * 109.53913 * 58.58490 * 12 9 8 14 14 C 1.53202 * 109.31046 * 61.36637 * 13 12 9 15 15 N 1.46927 * 108.77272 * 305.36037 * 14 13 12 16 16 C 1.36932 * 120.63171 * 233.60931 * 15 14 13 17 17 H 1.08004 * 119.99686 * 141.93914 * 16 15 14 18 18 C 1.38809 * 120.00294 * 321.93298 * 16 15 14 19 19 N 1.31623 * 119.99913 * 353.51678 * 18 16 15 20 20 Si 1.86797 * 120.00060 * 173.50952 * 18 16 15 21 21 H 1.48495 * 109.47252 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46868 * 120.00605 * 20 18 16 23 23 H 1.48498 * 109.47169 * 240.00273 * 20 18 16 24 24 C 1.46926 * 118.73414 * 53.61502 * 15 14 13 25 25 C 1.38299 * 118.92192 * 359.44720 * 5 4 3 26 26 C 1.34594 * 119.43633 * 180.02562 * 2 1 3 27 27 O 1.22009 * 119.96820 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47045 * 90.00047 * 1 2 3 29 29 H 1.09001 * 109.47608 * 210.00323 * 1 2 3 30 30 H 1.09004 * 109.46981 * 330.00201 * 1 2 3 31 31 H 1.08007 * 119.49899 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.06736 * 179.97438 * 4 3 2 33 33 H 0.96999 * 120.00415 * 355.65271 * 8 6 5 34 34 H 1.08999 * 109.46869 * 65.33730 * 10 9 8 35 35 H 1.09004 * 109.47185 * 185.33650 * 10 9 8 36 36 H 0.96698 * 114.00212 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.45887 * 178.60264 * 12 9 8 38 38 H 1.08997 * 109.46416 * 298.56505 * 12 9 8 39 39 H 1.09005 * 109.50195 * 181.31127 * 13 12 9 40 40 H 1.08995 * 109.50051 * 301.38029 * 13 12 9 41 41 H 1.08995 * 109.58761 * 65.15139 * 14 13 12 42 42 H 1.09004 * 109.58418 * 185.43701 * 14 13 12 43 43 H 0.96998 * 119.99994 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.58697 * 186.59947 * 24 15 14 45 45 H 1.08997 * 109.59273 * 66.17743 * 24 15 14 46 46 H 1.07999 * 120.49368 * 180.29169 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 0.0005 5 6 4.2202 0.0141 -0.0049 6 6 5.7046 0.0372 -0.0107 7 8 6.3282 -1.0053 -0.0149 8 7 6.3602 1.2146 -0.0113 9 6 7.8222 1.2390 0.0792 10 6 8.2651 0.5558 1.3747 11 8 7.6093 1.1705 2.4856 12 6 8.4206 0.4986 -1.1190 13 6 7.9510 1.1608 -2.4164 14 6 8.4411 2.6119 -2.4507 15 7 7.9908 3.2921 -1.2287 16 6 7.2864 4.4641 -1.3018 17 1 6.4770 4.6516 -0.6117 18 6 7.6126 5.4112 -2.2627 19 7 8.6764 5.2419 -3.0191 20 14 6.5418 6.9260 -2.4824 21 1 5.4151 6.8801 -1.5162 22 1 7.3534 8.1455 -2.2384 23 1 6.0061 6.9569 -3.8670 24 6 8.3108 2.6909 0.0731 25 6 3.5360 -1.1878 0.0010 26 6 2.1265 -1.1722 -0.0005 27 8 1.5055 -2.2224 -0.0015 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.5748 2.1069 0.0004 32 1 3.9996 2.1675 0.0001 33 1 5.8641 2.0460 -0.0717 34 1 8.0015 -0.5011 1.3365 35 1 9.3445 0.6573 1.4883 36 1 7.8431 0.7868 3.3419 37 1 9.5085 0.5384 -1.0641 38 1 8.0942 -0.5412 -1.1033 39 1 8.3586 0.6189 -3.2698 40 1 6.8621 1.1429 -2.4605 41 1 9.5298 2.6288 -2.4983 42 1 8.0291 3.1161 -3.3250 43 1 8.9045 5.9039 -3.6903 44 1 7.8110 3.2479 0.8657 45 1 9.3890 2.7143 0.2314 46 1 4.0737 -2.1245 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501331293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:58 Heat of formation + Delta-G solvation = -55.590428 kcal Electronic energy + Delta-G solvation = -30465.776809 eV Core-core repulsion = 26356.912493 eV Total energy + Delta-G solvation = -4108.864316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46108 -40.07533 -37.67089 -36.92991 -36.06037 -34.57226 -33.92839 -32.29185 -30.51144 -30.08622 -29.98564 -27.90086 -25.48320 -25.09432 -24.48716 -23.45562 -22.23708 -21.15909 -20.25614 -18.85797 -18.10625 -17.36338 -17.04775 -16.92330 -16.73290 -16.23220 -15.78614 -15.23806 -14.94719 -14.84111 -14.36911 -14.26082 -14.05324 -13.52007 -13.50224 -13.35796 -13.20150 -12.89644 -12.81666 -12.67778 -12.42335 -11.97808 -11.92520 -11.82953 -11.55222 -11.19136 -11.04382 -10.86719 -10.49649 -10.39198 -10.21411 -10.14155 -10.11405 -9.86175 -9.72465 -9.62201 -9.15271 -8.56371 -8.55868 -8.12049 -6.60896 -5.87801 -3.44111 0.40400 1.58131 2.44633 2.97372 3.28949 3.35814 3.36563 3.38189 3.74407 4.36099 4.38237 4.43803 4.47936 4.70029 4.90324 4.97341 5.05957 5.16001 5.28823 5.31856 5.32128 5.44315 5.56462 5.64559 5.69607 5.77058 5.87124 5.94608 6.00393 6.11497 6.22525 6.30093 6.36963 6.47041 6.63710 6.68985 6.78254 6.85168 6.87617 7.01705 7.34376 7.62061 7.70186 7.82102 7.82868 7.93585 8.41700 8.49207 9.14098 9.71986 10.35094 11.19748 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.004212 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.842674 B = 6646.639495 C = 8200.807637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.497 5.497 3 C 0.126 3.874 4 C -0.205 4.205 5 C -0.023 4.023 6 C 0.553 3.447 7 O -0.539 6.539 8 N -0.674 5.674 9 C 0.165 3.835 10 C 0.066 3.934 11 O -0.565 6.565 12 C -0.121 4.121 13 C -0.137 4.137 14 C 0.174 3.826 15 N -0.588 5.588 16 C -0.263 4.263 17 H 0.062 0.938 18 C 0.015 3.985 19 N -0.897 5.897 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.148 3.852 25 C -0.179 4.179 26 C 0.512 3.488 27 O -0.551 6.551 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.407 0.593 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.371 0.629 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.078 0.922 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.033 0.967 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 -6.742 7.475 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.209 5.209 3 C 0.000 4.000 4 C -0.228 4.228 5 C -0.030 4.030 6 C 0.338 3.662 7 O -0.418 6.418 8 N -0.324 5.324 9 C 0.077 3.923 10 C -0.013 4.013 11 O -0.369 6.369 12 C -0.160 4.160 13 C -0.176 4.176 14 C 0.048 3.952 15 N -0.310 5.310 16 C -0.392 4.392 17 H 0.079 0.921 18 C -0.185 4.185 19 N -0.539 5.539 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.216 1.216 24 C 0.021 3.979 25 C -0.202 4.202 26 C 0.314 3.686 27 O -0.434 6.434 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.185 0.815 32 H 0.171 0.829 33 H 0.244 0.756 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.216 0.784 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.150 -7.611 6.854 14.420 hybrid contribution -0.310 1.092 0.138 1.143 sum -10.460 -6.519 6.992 14.170 Atomic orbital electron populations 1.22173 0.77187 1.04956 1.03975 1.45364 1.09366 1.06843 1.59320 1.21835 0.93601 0.89291 0.95265 1.20813 0.92576 0.99003 1.10447 1.20655 0.94366 0.93707 0.94260 1.18209 0.86333 0.84396 0.77238 1.90669 1.68072 1.32551 1.50519 1.45712 1.07457 1.07994 1.71216 1.21067 0.79226 0.99549 0.92409 1.22633 0.95411 0.97071 0.86204 1.86501 1.70999 1.62679 1.16718 1.21779 0.99722 1.00007 0.94469 1.22113 1.00667 0.99602 0.95237 1.20749 0.96127 0.87477 0.90821 1.43950 1.64291 1.23968 0.98814 1.19072 1.09749 0.93158 1.17263 0.92066 1.25355 0.96018 0.97273 0.99853 1.69972 1.25107 1.35479 1.23349 0.86252 0.79833 0.83193 0.77592 1.20130 1.21565 1.21601 1.21128 0.97395 0.88956 0.90445 1.22662 0.92018 0.99691 1.05863 1.17094 0.88949 0.82818 0.79743 1.90944 1.69441 1.29776 1.53253 0.90523 0.88812 0.89557 0.81492 0.82939 0.75593 0.92110 0.93285 0.78372 0.91963 0.90843 0.93262 0.92863 0.96270 0.90338 0.93529 0.91436 0.94961 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.34 59.85 0.62 1.03 16 2 N -0.50 -5.19 2.98 -127.13 -0.38 -5.57 16 3 C 0.13 1.11 10.25 -16.90 -0.17 0.94 16 4 C -0.21 -2.29 9.50 -39.54 -0.38 -2.66 16 5 C -0.02 -0.32 5.91 -104.56 -0.62 -0.94 16 6 C 0.55 8.99 7.22 -12.05 -0.09 8.90 16 7 O -0.54 -9.89 12.70 5.39 0.07 -9.82 16 8 N -0.67 -10.95 3.90 -48.24 -0.19 -11.14 16 9 C 0.17 2.81 0.45 -131.70 -0.06 2.75 16 10 C 0.07 0.99 5.63 37.16 0.21 1.19 16 11 O -0.57 -7.95 13.08 -35.23 -0.46 -8.41 16 12 C -0.12 -2.13 4.48 -26.69 -0.12 -2.25 16 13 C -0.14 -2.61 5.93 -26.61 -0.16 -2.76 16 14 C 0.17 3.93 5.21 -3.71 -0.02 3.91 16 15 N -0.59 -13.41 2.84 -172.31 -0.49 -13.90 16 16 C -0.26 -6.53 9.51 -15.06 -0.14 -6.67 16 17 H 0.06 1.47 7.84 -52.48 -0.41 1.06 16 18 C 0.02 0.40 5.11 -17.43 -0.09 0.31 16 19 N -0.90 -24.69 11.34 55.49 0.63 -24.06 16 20 Si 0.90 20.21 29.56 -169.99 -5.02 15.19 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.15 2.90 5.07 -3.71 -0.02 2.88 16 25 C -0.18 -2.61 9.61 -38.53 -0.37 -2.98 16 26 C 0.51 7.30 7.42 -15.31 -0.11 7.18 16 27 O -0.55 -9.43 16.62 4.91 0.08 -9.35 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.76 7.37 -51.93 -0.38 0.38 16 30 H 0.09 0.33 8.00 -51.93 -0.42 -0.09 16 31 H 0.17 0.79 8.02 -52.48 -0.42 0.37 16 32 H 0.15 1.58 6.50 -52.49 -0.34 1.24 16 33 H 0.41 6.55 6.57 -40.82 -0.27 6.28 16 34 H 0.06 0.96 6.43 -51.93 -0.33 0.62 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.37 3.51 9.12 45.56 0.42 3.93 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.32 6.12 -51.93 -0.32 1.00 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 1.05 7.53 -51.93 -0.39 0.66 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.99 6.52 -51.93 -0.34 1.65 16 43 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.07 1.35 7.79 -51.93 -0.40 0.94 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.16 2.44 7.69 -52.49 -0.40 2.03 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -33.01 368.62 -7.41 -40.42 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.69 Total: 10.26 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -1.52 Total: 10.83 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.43 Total: -54.67 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.31 Total: -27.58 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.01 -7.41 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501331293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.169 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds