Wall clock time and date at job start Tue Mar 31 2020 18:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35696 * 119.44277 * 2 1 4 4 C 1.35262 * 121.00212 * 179.97438 * 3 2 1 5 5 C 1.41151 * 119.86835 * 0.27957 * 4 3 2 6 6 C 1.48461 * 120.53769 * 179.71882 * 5 4 3 7 7 O 1.21477 * 119.99640 * 179.97438 * 6 5 4 8 8 N 1.34771 * 120.00013 * 359.97438 * 6 5 4 9 9 C 1.46504 * 119.99748 * 175.64952 * 8 6 5 10 10 C 1.53002 * 109.49833 * 300.67955 * 9 8 6 11 11 O 1.42904 * 109.47202 * 305.33721 * 10 9 8 12 12 C 1.53034 * 109.49629 * 60.74384 * 9 8 6 13 13 C 1.53040 * 109.53913 * 58.58490 * 12 9 8 14 14 C 1.53202 * 109.31046 * 61.36637 * 13 12 9 15 15 N 1.46927 * 108.77272 * 305.36037 * 14 13 12 16 16 C 1.36932 * 120.63171 * 233.60931 * 15 14 13 17 17 H 1.08004 * 119.99686 * 141.93914 * 16 15 14 18 18 C 1.38809 * 120.00294 * 321.93298 * 16 15 14 19 19 N 1.31623 * 119.99913 * 353.51678 * 18 16 15 20 20 Si 1.86797 * 120.00060 * 173.50952 * 18 16 15 21 21 H 1.48495 * 109.47252 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46868 * 120.00605 * 20 18 16 23 23 H 1.48498 * 109.47169 * 240.00273 * 20 18 16 24 24 C 1.46926 * 118.73414 * 53.61502 * 15 14 13 25 25 C 1.38299 * 118.92192 * 359.44720 * 5 4 3 26 26 C 1.34594 * 119.43633 * 180.02562 * 2 1 3 27 27 O 1.22009 * 119.96820 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47045 * 90.00047 * 1 2 3 29 29 H 1.09001 * 109.47608 * 210.00323 * 1 2 3 30 30 H 1.09004 * 109.46981 * 330.00201 * 1 2 3 31 31 H 1.08007 * 119.49899 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.06736 * 179.97438 * 4 3 2 33 33 H 0.96999 * 120.00415 * 355.65271 * 8 6 5 34 34 H 1.08999 * 109.46869 * 65.33730 * 10 9 8 35 35 H 1.09004 * 109.47185 * 185.33650 * 10 9 8 36 36 H 0.96698 * 114.00212 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.45887 * 178.60264 * 12 9 8 38 38 H 1.08997 * 109.46416 * 298.56505 * 12 9 8 39 39 H 1.09005 * 109.50195 * 181.31127 * 13 12 9 40 40 H 1.08995 * 109.50051 * 301.38029 * 13 12 9 41 41 H 1.08995 * 109.58761 * 65.15139 * 14 13 12 42 42 H 1.09004 * 109.58418 * 185.43701 * 14 13 12 43 43 H 0.96998 * 119.99994 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.58697 * 186.59947 * 24 15 14 45 45 H 1.08997 * 109.59273 * 66.17743 * 24 15 14 46 46 H 1.07999 * 120.49368 * 180.29169 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 0.0005 5 6 4.2202 0.0141 -0.0049 6 6 5.7046 0.0372 -0.0107 7 8 6.3282 -1.0053 -0.0149 8 7 6.3602 1.2146 -0.0113 9 6 7.8222 1.2390 0.0792 10 6 8.2651 0.5558 1.3747 11 8 7.6093 1.1705 2.4856 12 6 8.4206 0.4986 -1.1190 13 6 7.9510 1.1608 -2.4164 14 6 8.4411 2.6119 -2.4507 15 7 7.9908 3.2921 -1.2287 16 6 7.2864 4.4641 -1.3018 17 1 6.4770 4.6516 -0.6117 18 6 7.6126 5.4112 -2.2627 19 7 8.6764 5.2419 -3.0191 20 14 6.5418 6.9260 -2.4824 21 1 5.4151 6.8801 -1.5162 22 1 7.3534 8.1455 -2.2384 23 1 6.0061 6.9569 -3.8670 24 6 8.3108 2.6909 0.0731 25 6 3.5360 -1.1878 0.0010 26 6 2.1265 -1.1722 -0.0005 27 8 1.5055 -2.2224 -0.0015 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.5748 2.1069 0.0004 32 1 3.9996 2.1675 0.0001 33 1 5.8641 2.0460 -0.0717 34 1 8.0015 -0.5011 1.3365 35 1 9.3445 0.6573 1.4883 36 1 7.8431 0.7868 3.3419 37 1 9.5085 0.5384 -1.0641 38 1 8.0942 -0.5412 -1.1033 39 1 8.3586 0.6189 -3.2698 40 1 6.8621 1.1429 -2.4605 41 1 9.5298 2.6288 -2.4983 42 1 8.0291 3.1161 -3.3250 43 1 8.9045 5.9039 -3.6903 44 1 7.8110 3.2479 0.8657 45 1 9.3890 2.7143 0.2314 46 1 4.0737 -2.1245 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501331293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:57 Heat of formation + Delta-G solvation = -79.989435 kcal Electronic energy + Delta-G solvation = -30466.834830 eV Core-core repulsion = 26356.912493 eV Total energy + Delta-G solvation = -4109.922336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44813 -41.39706 -39.07272 -38.00644 -37.35444 -35.56029 -35.48084 -33.87756 -32.27786 -31.50896 -30.94533 -28.72604 -27.24966 -26.57671 -25.47342 -24.41564 -23.91818 -22.56830 -21.68531 -20.24729 -19.19633 -18.61818 -18.32872 -18.13581 -17.92600 -17.13180 -16.87645 -16.84725 -16.46440 -16.17569 -15.72289 -15.58222 -15.19386 -15.03012 -14.75146 -14.62220 -14.25018 -14.23253 -14.05841 -13.97781 -13.44869 -13.41767 -13.13258 -12.88643 -12.81745 -12.80779 -12.72108 -12.48601 -12.19934 -11.92357 -11.79202 -11.53592 -11.46486 -11.20098 -11.09825 -10.96226 -10.54871 -10.48017 -9.90060 -9.07248 -8.49453 -7.81289 -5.40357 -0.61650 0.64415 1.52449 1.54962 1.62392 1.64085 1.80698 2.10337 2.54944 2.67407 3.30708 3.37531 3.49790 3.67805 3.69559 3.72001 4.00353 4.08184 4.11584 4.16422 4.28185 4.37130 4.43892 4.46930 4.55602 4.60767 4.74078 4.77126 4.81620 4.87380 4.91806 4.97869 5.02102 5.10677 5.15242 5.20536 5.30249 5.43353 5.54886 5.63038 5.73150 5.77414 5.93535 6.48879 6.63343 6.82646 6.93534 7.19426 7.23315 7.85717 8.45382 9.24722 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.004212 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.842674 B = 6646.639495 C = 8200.807637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.488 5.488 3 C 0.161 3.839 4 C -0.225 4.225 5 C -0.017 4.017 6 C 0.551 3.449 7 O -0.564 6.564 8 N -0.671 5.671 9 C 0.168 3.832 10 C 0.075 3.925 11 O -0.576 6.576 12 C -0.116 4.116 13 C -0.124 4.124 14 C 0.185 3.815 15 N -0.600 5.600 16 C -0.261 4.261 17 H 0.075 0.925 18 C -0.040 4.040 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.254 1.254 22 H -0.299 1.299 23 H -0.296 1.296 24 C 0.154 3.846 25 C -0.210 4.210 26 C 0.504 3.496 27 O -0.594 6.594 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.225 0.775 32 H 0.165 0.835 33 H 0.409 0.591 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.392 0.608 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.047 0.953 41 H -0.003 1.003 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.067 0.933 45 H 0.028 0.972 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -5.244 8.769 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.197 5.197 3 C 0.034 3.966 4 C -0.248 4.248 5 C -0.024 4.024 6 C 0.338 3.662 7 O -0.445 6.445 8 N -0.320 5.320 9 C 0.081 3.919 10 C -0.004 4.004 11 O -0.383 6.383 12 C -0.154 4.154 13 C -0.163 4.163 14 C 0.060 3.940 15 N -0.322 5.322 16 C -0.391 4.391 17 H 0.092 0.908 18 C -0.237 4.237 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.178 1.178 22 H -0.227 1.227 23 H -0.223 1.223 24 C 0.028 3.972 25 C -0.234 4.234 26 C 0.307 3.693 27 O -0.481 6.481 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.149 0.851 31 H 0.242 0.758 32 H 0.182 0.818 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.241 0.759 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.015 0.985 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.418 -6.111 8.197 16.085 hybrid contribution 0.368 0.683 -0.217 0.805 sum -12.050 -5.429 7.979 15.438 Atomic orbital electron populations 1.22522 0.74608 1.06480 1.05305 1.45527 1.11066 1.06296 1.56851 1.22646 0.93117 0.90196 0.90666 1.20977 0.93707 0.98095 1.11989 1.20575 0.93037 0.94763 0.94021 1.18534 0.87365 0.83840 0.76508 1.90653 1.68915 1.33339 1.51550 1.45643 1.07082 1.08130 1.71164 1.20926 0.79776 0.97727 0.93517 1.22429 0.96207 0.96161 0.85593 1.86437 1.71166 1.62959 1.17707 1.21718 1.00202 0.99679 0.93848 1.21930 1.00139 0.97426 0.96810 1.20483 0.94537 0.89162 0.89868 1.44112 1.64298 1.23917 0.99920 1.19479 1.09721 0.93287 1.16594 0.90772 1.26086 0.97290 1.00100 1.00180 1.70140 1.27169 1.36312 1.24291 0.85251 0.78703 0.79348 0.77397 1.17760 1.22668 1.22329 1.21108 0.97139 0.90223 0.88706 1.22440 0.92635 0.99282 1.09005 1.17022 0.88734 0.83551 0.79957 1.90910 1.70023 1.31404 1.55772 0.89274 0.90336 0.85053 0.75835 0.81764 0.75375 0.92818 0.91737 0.75876 0.91244 0.90955 0.92130 0.93437 0.98485 0.93533 0.94304 0.91485 0.95458 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.34 127.77 1.32 1.85 16 2 N -0.49 -8.78 2.98 -674.31 -2.01 -10.79 16 3 C 0.16 2.09 10.25 83.41 0.86 2.95 16 4 C -0.23 -4.36 9.50 22.30 0.21 -4.15 16 5 C -0.02 -0.46 5.91 -19.82 -0.12 -0.57 16 6 C 0.55 17.65 7.22 86.97 0.63 18.28 16 7 O -0.56 -20.83 12.70 -3.64 -0.05 -20.88 16 8 N -0.67 -21.00 3.90 -424.83 -1.66 -22.65 16 9 C 0.17 5.54 0.45 3.68 0.00 5.55 16 10 C 0.08 2.13 5.63 71.98 0.41 2.54 16 11 O -0.58 -14.97 13.08 -148.98 -1.95 -16.91 16 12 C -0.12 -3.99 4.48 30.62 0.14 -3.85 16 13 C -0.12 -4.70 5.93 30.68 0.18 -4.52 16 14 C 0.19 8.51 5.21 86.37 0.45 8.96 16 15 N -0.60 -27.19 2.84 -699.07 -1.98 -29.17 16 16 C -0.26 -12.72 9.51 84.03 0.80 -11.92 16 17 H 0.07 3.38 7.84 -2.91 -0.02 3.36 16 18 C -0.04 -2.07 5.11 84.86 0.43 -1.64 16 19 N -0.93 -52.48 11.34 21.65 0.25 -52.23 16 20 Si 0.96 41.06 29.56 68.60 2.03 43.09 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 22 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.30 -12.83 7.11 99.48 0.71 -12.12 16 24 C 0.15 5.91 5.07 86.36 0.44 6.35 16 25 C -0.21 -6.27 9.61 22.95 0.22 -6.05 16 26 C 0.50 14.24 7.42 84.94 0.63 14.87 16 27 O -0.59 -20.87 16.62 -5.35 -0.09 -20.96 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.13 7.37 -2.39 -0.02 1.11 16 30 H 0.13 0.22 8.00 -2.39 -0.02 0.20 16 31 H 0.23 0.44 8.02 -2.91 -0.02 0.41 16 32 H 0.16 2.83 6.50 -2.91 -0.02 2.81 16 33 H 0.41 12.43 6.57 -92.71 -0.61 11.82 16 34 H 0.05 1.63 6.43 -2.39 -0.02 1.62 16 35 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.39 6.48 9.12 -74.06 -0.68 5.81 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.56 6.12 -2.39 -0.01 2.55 16 39 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.05 1.85 7.53 -2.39 -0.02 1.83 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.05 2.43 6.52 -2.39 -0.02 2.41 16 43 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 44 H 0.07 2.57 7.79 -2.38 -0.02 2.55 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.14 4.59 7.69 -2.91 -0.02 4.57 16 Total: -1.00 -74.84 368.62 0.88 -73.96 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.26 Total: 27.91 kcal Atomic # 6 Polarization: 22.04 SS G_CDS: 6.60 Total: 28.63 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -5.40 Total: -114.84 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -2.08 Total: -58.76 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -74.84 0.88 -73.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501331293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.032 kcal (2) G-P(sol) polarization free energy of solvation -74.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds