Wall clock time and date at job start Tue Mar 31 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34596 * 119.47989 * 2 1 4 4 C 1.38002 * 120.45882 * 180.02562 * 3 2 1 5 5 C 1.47456 * 120.25345 * 180.02562 * 4 3 2 6 6 O 1.21604 * 120.00052 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99490 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99411 * 174.55875 * 7 5 4 9 9 C 1.53001 * 109.54070 * 64.48353 * 8 7 5 10 10 N 1.46504 * 109.47274 * 54.67369 * 9 8 7 11 11 C 1.36932 * 119.99480 * 184.98208 * 10 9 8 12 12 H 1.07999 * 120.00627 * 359.97438 * 11 10 9 13 13 C 1.38818 * 119.99740 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99891 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00085 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47190 * 59.99817 * 15 13 11 17 17 H 1.48498 * 109.47249 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.47256 * 300.00222 * 15 13 11 19 19 C 1.53202 * 109.60896 * 184.69802 * 8 7 5 20 20 C 1.53090 * 109.15397 * 62.93923 * 19 8 7 21 21 O 1.42900 * 109.42352 * 57.60001 * 20 19 8 22 22 C 1.42900 * 114.09847 * 298.84040 * 21 20 19 23 23 C 1.53097 * 109.41760 * 61.15670 * 22 21 20 24 24 C 1.41588 * 119.48564 * 0.27180 * 4 3 2 25 25 C 1.35974 * 119.01127 * 359.47320 * 24 4 3 26 26 C 1.34543 * 119.47679 * 180.02562 * 2 1 3 27 27 O 1.21961 * 119.74983 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.47632 * 89.99913 * 1 2 3 29 29 H 1.09003 * 109.47199 * 209.99731 * 1 2 3 30 30 H 1.09007 * 109.47240 * 329.99869 * 1 2 3 31 31 H 1.07998 * 119.76597 * 0.02562 * 3 2 1 32 32 H 0.96997 * 119.99957 * 354.55513 * 7 5 4 33 33 H 1.09004 * 109.46570 * 174.66976 * 9 8 7 34 34 H 1.08997 * 109.47273 * 294.66732 * 9 8 7 35 35 H 0.96993 * 119.99801 * 4.97957 * 10 9 8 36 36 H 0.96996 * 120.00045 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.53842 * 303.03043 * 19 8 7 38 38 H 1.08996 * 109.51915 * 182.84185 * 19 8 7 39 39 H 1.09003 * 109.47850 * 297.61425 * 20 19 8 40 40 H 1.09001 * 109.48482 * 177.59300 * 20 19 8 41 41 H 1.09010 * 109.48061 * 181.13566 * 22 21 20 42 42 H 1.08997 * 109.48187 * 301.15892 * 22 21 20 43 43 H 1.09003 * 109.52068 * 62.29567 * 23 22 21 44 44 H 1.08997 * 109.52283 * 182.42380 * 23 22 21 45 45 H 1.08002 * 120.49877 * 179.75158 * 24 4 3 46 46 H 1.08004 * 120.25396 * 180.24204 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 -0.0005 5 6 4.2282 2.4815 0.0000 6 8 3.6069 3.5269 0.0005 7 7 5.5759 2.4985 0.0000 8 6 6.2923 3.7707 -0.1197 9 6 5.9992 4.6403 1.1046 10 7 6.3235 3.8938 2.3228 11 6 6.0463 4.4333 3.5504 12 1 5.5891 5.4092 3.6208 13 6 6.3530 3.7257 4.7047 14 7 6.9106 2.5366 4.6190 15 14 5.9744 4.4613 6.3795 16 1 4.5153 4.7140 6.4907 17 1 6.3956 3.5141 7.4428 18 1 6.7117 5.7408 6.5364 19 6 7.7985 3.5060 -0.2116 20 6 8.0907 2.7024 -1.4814 21 8 7.6125 3.4219 -2.6197 22 6 6.2030 3.6571 -2.6114 23 6 5.8348 4.4992 -1.3870 24 6 4.2250 -0.0251 -0.0069 25 6 3.5344 -1.1964 -0.0015 26 6 2.1270 -1.1713 -0.0005 27 8 1.5030 -2.2192 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.5750 2.0998 0.0004 32 1 6.0713 1.6684 0.0794 33 1 6.6053 5.5452 1.0609 34 1 4.9433 4.9104 1.1141 35 1 6.7344 3.0174 2.2596 36 1 7.1253 2.0424 5.4256 37 1 8.1228 2.9390 0.6611 38 1 8.3334 4.4549 -0.2498 39 1 7.5881 1.7368 -1.4242 40 1 9.1657 2.5476 -1.5744 41 1 5.9181 4.1904 -3.5184 42 1 5.6757 2.7041 -2.5693 43 1 6.3300 5.4682 -1.4491 44 1 4.7548 4.6434 -1.3556 45 1 5.3050 -0.0257 -0.0115 46 1 4.0617 -2.1390 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502629452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:43 Heat of formation + Delta-G solvation = -60.147812 kcal Electronic energy + Delta-G solvation = -30367.049802 eV Core-core repulsion = 26257.987863 eV Total energy + Delta-G solvation = -4109.061939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62858 -40.47120 -38.44337 -36.93033 -35.76130 -34.93547 -33.65417 -31.74332 -31.08961 -30.42760 -30.01035 -27.97867 -26.55118 -24.59253 -23.77906 -23.38105 -23.24925 -21.56362 -21.13547 -19.11819 -18.35663 -17.49323 -17.25668 -16.81852 -16.33185 -16.17810 -15.94625 -15.69379 -15.41014 -14.86073 -14.52059 -14.41010 -14.38508 -14.05776 -13.53608 -13.47902 -13.25311 -13.18351 -12.80220 -12.75871 -12.45412 -12.39346 -12.19732 -11.95771 -11.66384 -11.58838 -11.19842 -10.93393 -10.80947 -10.53622 -10.38666 -10.31978 -10.19176 -10.11574 -9.74346 -9.61655 -9.38212 -8.82638 -8.64936 -8.12426 -6.88572 -5.76827 -3.03051 0.64281 1.27698 2.32362 3.05944 3.36372 3.44166 3.48575 3.49503 3.72819 3.93600 4.40295 4.45368 4.57931 4.65812 4.71577 4.86166 4.91045 4.94556 4.97930 5.07436 5.10418 5.12921 5.27303 5.31348 5.42957 5.58737 5.71344 5.72158 5.76648 5.81792 5.91485 5.96901 6.04009 6.07378 6.19118 6.22824 6.28900 6.42771 6.50573 6.76027 6.83949 7.01396 7.23936 7.71265 7.75959 7.77373 8.42767 8.48136 9.54337 10.11321 10.46899 11.46339 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007826 B = 0.004890 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.982365 B = 5724.844854 C = 8081.085995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.492 5.492 3 C 0.204 3.796 4 C -0.242 4.242 5 C 0.586 3.414 6 O -0.538 6.538 7 N -0.706 5.706 8 C 0.176 3.824 9 C 0.144 3.856 10 N -0.724 5.724 11 C -0.231 4.231 12 H 0.068 0.932 13 C -0.014 4.014 14 N -0.936 5.936 15 Si 0.905 3.095 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.287 1.287 19 C -0.156 4.156 20 C 0.061 3.939 21 O -0.385 6.385 22 C 0.066 3.934 23 C -0.165 4.165 24 C 0.009 3.991 25 C -0.246 4.246 26 C 0.515 3.485 27 O -0.549 6.549 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.395 0.605 33 H 0.020 0.980 34 H 0.048 0.952 35 H 0.381 0.619 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.137 0.863 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 -3.298 -15.596 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.200 5.200 3 C 0.071 3.929 4 C -0.251 4.251 5 C 0.373 3.627 6 O -0.416 6.416 7 N -0.357 5.357 8 C 0.090 3.910 9 C 0.016 3.984 10 N -0.369 5.369 11 C -0.363 4.363 12 H 0.086 0.914 13 C -0.210 4.210 14 N -0.586 5.586 15 Si 0.736 3.264 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.194 4.194 20 C -0.016 4.016 21 O -0.304 6.304 22 C -0.011 4.011 23 C -0.204 4.204 24 C -0.013 4.013 25 C -0.267 4.267 26 C 0.318 3.682 27 O -0.431 6.431 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.196 0.804 32 H 0.230 0.770 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.214 0.786 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.155 0.845 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.439 -3.081 -15.623 17.177 hybrid contribution 0.117 -0.359 1.512 1.558 sum -6.322 -3.440 -14.112 15.841 Atomic orbital electron populations 1.22282 0.76579 1.05558 1.04247 1.45183 1.09809 1.06871 1.58126 1.22282 0.93084 0.89831 0.87679 1.19524 0.92481 0.94721 1.18344 1.17373 0.82092 0.87491 0.75727 1.90715 1.67425 1.33041 1.50462 1.45737 1.05763 1.09686 1.74503 1.20595 0.90643 0.83927 0.95823 1.21077 0.99328 0.92958 0.85080 1.42174 1.74248 1.20374 1.00060 1.19169 1.32885 1.00487 0.83726 0.91426 1.24662 1.01950 0.96782 0.97562 1.69617 1.48613 1.12759 1.27582 0.86296 0.77910 0.77950 0.84217 1.21438 1.21776 1.21335 1.22453 0.94934 1.03072 0.98906 1.22601 0.99737 0.93739 0.85478 1.87898 1.22955 1.76575 1.43001 1.22513 0.81611 0.98717 0.98246 1.22564 1.04469 0.99558 0.93808 1.21497 1.00608 0.91089 0.88112 1.21960 0.92249 1.00124 1.12411 1.17272 0.89540 0.82546 0.78885 1.90925 1.69625 1.30001 1.52564 0.90199 0.88422 0.89108 0.80385 0.76959 0.96250 0.93447 0.78556 0.93622 0.89159 0.89381 0.93569 0.88805 0.89307 0.93501 0.90276 0.88393 0.84491 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 10.33 59.84 0.62 1.04 16 2 N -0.49 -5.48 2.95 -126.73 -0.37 -5.85 16 3 C 0.20 2.28 9.85 -16.43 -0.16 2.12 16 4 C -0.24 -3.09 5.88 -104.95 -0.62 -3.71 16 5 C 0.59 8.83 7.17 -12.50 -0.09 8.74 16 6 O -0.54 -9.41 12.62 5.27 0.07 -9.34 16 7 N -0.71 -9.98 3.61 -48.48 -0.18 -10.15 16 8 C 0.18 2.65 0.32 -131.62 -0.04 2.61 16 9 C 0.14 2.87 4.95 -4.04 -0.02 2.85 16 10 N -0.72 -17.47 5.21 -59.90 -0.31 -17.78 16 11 C -0.23 -6.40 9.99 -15.06 -0.15 -6.55 16 12 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 14 N -0.94 -27.48 13.06 55.49 0.72 -26.76 16 15 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C -0.16 -2.13 4.79 -26.58 -0.13 -2.25 16 20 C 0.06 0.70 6.67 37.20 0.25 0.95 16 21 O -0.39 -4.93 10.77 -35.23 -0.38 -5.31 16 22 C 0.07 0.77 6.68 37.21 0.25 1.02 16 23 C -0.17 -2.22 4.70 -26.59 -0.12 -2.34 16 24 C 0.01 0.10 9.56 -39.12 -0.37 -0.28 16 25 C -0.25 -2.98 9.97 -39.44 -0.39 -3.38 16 26 C 0.51 7.06 7.40 -15.41 -0.11 6.95 16 27 O -0.55 -9.08 16.58 4.95 0.08 -9.00 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.85 7.36 -51.93 -0.38 0.47 16 30 H 0.09 0.49 8.00 -51.92 -0.42 0.07 16 31 H 0.18 1.68 7.56 -52.49 -0.40 1.29 16 32 H 0.40 4.88 5.78 -40.82 -0.24 4.65 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 1.05 6.47 -51.93 -0.34 0.71 16 35 H 0.38 9.35 6.51 -40.82 -0.27 9.09 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.09 1.36 7.21 -51.93 -0.37 0.99 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.47 7.20 -51.93 -0.37 0.09 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.05 0.54 7.75 -51.93 -0.40 0.13 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.10 1.43 5.98 -51.93 -0.31 1.12 16 45 H 0.14 1.26 6.50 -52.49 -0.34 0.92 16 46 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -35.10 368.80 -7.37 -42.47 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.34 Total: 11.47 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.19 Total: 7.28 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.14 Total: -60.54 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.23 Total: -23.65 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.10 -7.37 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502629452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.682 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds