Wall clock time and date at job start Tue Mar 31 2020 18:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34596 * 119.47989 * 2 1 4 4 C 1.38002 * 120.45882 * 180.02562 * 3 2 1 5 5 C 1.47456 * 120.25345 * 180.02562 * 4 3 2 6 6 O 1.21604 * 120.00052 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99490 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99411 * 174.55875 * 7 5 4 9 9 C 1.53001 * 109.54070 * 64.48353 * 8 7 5 10 10 N 1.46504 * 109.47274 * 54.67369 * 9 8 7 11 11 C 1.36932 * 119.99480 * 184.98208 * 10 9 8 12 12 H 1.07999 * 120.00627 * 359.97438 * 11 10 9 13 13 C 1.38818 * 119.99740 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99891 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00085 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47190 * 59.99817 * 15 13 11 17 17 H 1.48498 * 109.47249 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.47256 * 300.00222 * 15 13 11 19 19 C 1.53202 * 109.60896 * 184.69802 * 8 7 5 20 20 C 1.53090 * 109.15397 * 62.93923 * 19 8 7 21 21 O 1.42900 * 109.42352 * 57.60001 * 20 19 8 22 22 C 1.42900 * 114.09847 * 298.84040 * 21 20 19 23 23 C 1.53097 * 109.41760 * 61.15670 * 22 21 20 24 24 C 1.41588 * 119.48564 * 0.27180 * 4 3 2 25 25 C 1.35974 * 119.01127 * 359.47320 * 24 4 3 26 26 C 1.34543 * 119.47679 * 180.02562 * 2 1 3 27 27 O 1.21961 * 119.74983 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.47632 * 89.99913 * 1 2 3 29 29 H 1.09003 * 109.47199 * 209.99731 * 1 2 3 30 30 H 1.09007 * 109.47240 * 329.99869 * 1 2 3 31 31 H 1.07998 * 119.76597 * 0.02562 * 3 2 1 32 32 H 0.96997 * 119.99957 * 354.55513 * 7 5 4 33 33 H 1.09004 * 109.46570 * 174.66976 * 9 8 7 34 34 H 1.08997 * 109.47273 * 294.66732 * 9 8 7 35 35 H 0.96993 * 119.99801 * 4.97957 * 10 9 8 36 36 H 0.96996 * 120.00045 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.53842 * 303.03043 * 19 8 7 38 38 H 1.08996 * 109.51915 * 182.84185 * 19 8 7 39 39 H 1.09003 * 109.47850 * 297.61425 * 20 19 8 40 40 H 1.09001 * 109.48482 * 177.59300 * 20 19 8 41 41 H 1.09010 * 109.48061 * 181.13566 * 22 21 20 42 42 H 1.08997 * 109.48187 * 301.15892 * 22 21 20 43 43 H 1.09003 * 109.52068 * 62.29567 * 23 22 21 44 44 H 1.08997 * 109.52283 * 182.42380 * 23 22 21 45 45 H 1.08002 * 120.49877 * 179.75158 * 24 4 3 46 46 H 1.08004 * 120.25396 * 180.24204 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 -0.0005 5 6 4.2282 2.4815 0.0000 6 8 3.6069 3.5269 0.0005 7 7 5.5759 2.4985 0.0000 8 6 6.2923 3.7707 -0.1197 9 6 5.9992 4.6403 1.1046 10 7 6.3235 3.8938 2.3228 11 6 6.0463 4.4333 3.5504 12 1 5.5891 5.4092 3.6208 13 6 6.3530 3.7257 4.7047 14 7 6.9106 2.5366 4.6190 15 14 5.9744 4.4613 6.3795 16 1 4.5153 4.7140 6.4907 17 1 6.3956 3.5141 7.4428 18 1 6.7117 5.7408 6.5364 19 6 7.7985 3.5060 -0.2116 20 6 8.0907 2.7024 -1.4814 21 8 7.6125 3.4219 -2.6197 22 6 6.2030 3.6571 -2.6114 23 6 5.8348 4.4992 -1.3870 24 6 4.2250 -0.0251 -0.0069 25 6 3.5344 -1.1964 -0.0015 26 6 2.1270 -1.1713 -0.0005 27 8 1.5030 -2.2192 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.5750 2.0998 0.0004 32 1 6.0713 1.6684 0.0794 33 1 6.6053 5.5452 1.0609 34 1 4.9433 4.9104 1.1141 35 1 6.7344 3.0174 2.2596 36 1 7.1253 2.0424 5.4256 37 1 8.1228 2.9390 0.6611 38 1 8.3334 4.4549 -0.2498 39 1 7.5881 1.7368 -1.4242 40 1 9.1657 2.5476 -1.5744 41 1 5.9181 4.1904 -3.5184 42 1 5.6757 2.7041 -2.5693 43 1 6.3300 5.4682 -1.4491 44 1 4.7548 4.6434 -1.3556 45 1 5.3050 -0.0257 -0.0115 46 1 4.0617 -2.1390 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502629452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:42 Heat of formation + Delta-G solvation = -84.944613 kcal Electronic energy + Delta-G solvation = -30368.125072 eV Core-core repulsion = 26257.987863 eV Total energy + Delta-G solvation = -4110.137209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.61169 -41.61787 -39.52912 -38.00914 -37.15001 -35.89022 -35.37033 -33.14998 -32.25558 -31.98367 -31.00251 -28.76958 -28.10887 -25.72492 -25.26465 -24.54976 -24.21149 -23.03599 -22.20797 -20.32330 -19.38984 -19.23537 -18.45857 -17.85950 -17.25750 -17.18872 -16.96851 -16.80319 -16.73208 -16.23768 -16.00998 -15.55637 -15.34171 -15.25724 -15.17218 -14.84479 -14.31764 -14.19337 -14.17026 -13.83216 -13.61815 -13.44372 -13.20748 -13.14371 -13.03718 -12.82880 -12.75943 -12.63891 -12.26195 -12.12999 -11.92922 -11.60623 -11.35400 -11.24560 -11.20355 -10.98485 -10.70772 -10.47036 -9.88463 -9.13107 -8.91959 -7.93281 -5.18260 -0.27077 0.24352 1.43989 1.46316 1.47560 1.53676 1.95565 2.25167 2.56611 2.68976 3.01482 3.39815 3.52090 3.56294 3.63544 3.77188 3.81977 3.87488 3.93602 4.05005 4.06981 4.29974 4.32704 4.36158 4.36450 4.51330 4.67891 4.70821 4.80355 4.85580 4.87370 4.90220 4.92286 4.93909 5.03525 5.11328 5.17924 5.20640 5.25531 5.31484 5.50009 5.68420 5.81065 6.29512 6.29966 6.63189 6.75562 7.32165 7.37804 8.12403 8.40467 9.29286 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007826 B = 0.004890 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.982365 B = 5724.844854 C = 8081.085995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.487 5.487 3 C 0.218 3.782 4 C -0.260 4.260 5 C 0.583 3.417 6 O -0.566 6.566 7 N -0.701 5.701 8 C 0.182 3.818 9 C 0.145 3.855 10 N -0.727 5.727 11 C -0.240 4.240 12 H 0.063 0.937 13 C -0.066 4.066 14 N -0.961 5.961 15 Si 0.963 3.037 16 H -0.285 1.285 17 H -0.294 1.294 18 H -0.280 1.280 19 C -0.149 4.149 20 C 0.065 3.935 21 O -0.393 6.393 22 C 0.071 3.929 23 C -0.158 4.158 24 C 0.019 3.981 25 C -0.258 4.258 26 C 0.503 3.497 27 O -0.586 6.586 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.198 0.802 32 H 0.404 0.596 33 H 0.016 0.984 34 H 0.026 0.974 35 H 0.378 0.622 36 H 0.250 0.750 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.159 0.841 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -3.130 -16.568 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.193 5.193 3 C 0.084 3.916 4 C -0.269 4.269 5 C 0.371 3.629 6 O -0.447 6.447 7 N -0.352 5.352 8 C 0.096 3.904 9 C 0.018 3.982 10 N -0.370 5.370 11 C -0.372 4.372 12 H 0.081 0.919 13 C -0.259 4.259 14 N -0.612 5.612 15 Si 0.793 3.207 16 H -0.212 1.212 17 H -0.220 1.220 18 H -0.206 1.206 19 C -0.188 4.188 20 C -0.012 4.012 21 O -0.312 6.312 22 C -0.006 4.006 23 C -0.197 4.197 24 C -0.003 4.003 25 C -0.280 4.280 26 C 0.308 3.692 27 O -0.472 6.472 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.215 0.785 32 H 0.241 0.759 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.211 0.789 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.176 0.824 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.462 -2.895 -16.623 18.068 hybrid contribution 0.070 -0.309 1.801 1.829 sum -6.392 -3.204 -14.822 16.456 Atomic orbital electron populations 1.22576 0.74508 1.06395 1.05835 1.45276 1.11202 1.06189 1.56601 1.22545 0.92898 0.90315 0.85841 1.19467 0.93204 0.94098 1.20094 1.17692 0.82231 0.87901 0.75029 1.90702 1.67959 1.34199 1.51866 1.45679 1.05718 1.09716 1.74133 1.20437 0.91901 0.83806 0.94272 1.21125 0.97707 0.93569 0.85818 1.42232 1.73980 1.20414 1.00418 1.19464 1.32095 1.00359 0.85311 0.91884 1.25331 1.02577 0.97386 1.00565 1.69742 1.49797 1.13736 1.27952 0.85374 0.77660 0.77322 0.80377 1.21171 1.21994 1.20622 1.22378 0.93467 1.03082 0.99826 1.22674 1.01123 0.93671 0.83694 1.87901 1.23328 1.76787 1.43214 1.22542 0.81326 0.98825 0.97873 1.22487 1.03631 0.99808 0.93764 1.21647 1.01636 0.90208 0.86792 1.22058 0.91802 1.00903 1.13207 1.17576 0.90204 0.82714 0.78741 1.90900 1.70399 1.31263 1.54640 0.88283 0.89533 0.86331 0.78505 0.75857 0.96666 0.95587 0.78913 0.94099 0.90655 0.89942 0.91876 0.86977 0.87463 0.92890 0.90248 0.89553 0.82386 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.33 127.77 1.32 1.97 16 2 N -0.49 -10.21 2.95 -673.11 -1.99 -12.20 16 3 C 0.22 4.53 9.85 84.21 0.83 5.36 16 4 C -0.26 -6.31 5.88 -20.08 -0.12 -6.42 16 5 C 0.58 17.03 7.17 86.67 0.62 17.65 16 6 O -0.57 -19.58 12.62 -4.04 -0.05 -19.63 16 7 N -0.70 -19.08 3.61 -425.54 -1.54 -20.62 16 8 C 0.18 5.37 0.32 3.73 0.00 5.37 16 9 C 0.15 5.84 4.95 86.38 0.43 6.27 16 10 N -0.73 -35.29 5.21 -343.44 -1.79 -37.08 16 11 C -0.24 -13.34 9.99 84.04 0.84 -12.50 16 12 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 13 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 14 N -0.96 -56.51 13.06 21.65 0.28 -56.23 16 15 Si 0.96 46.09 29.55 68.60 2.03 48.12 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 C -0.15 -3.92 4.79 30.69 0.15 -3.77 16 20 C 0.06 1.32 6.67 72.01 0.48 1.80 16 21 O -0.39 -8.99 10.77 -148.98 -1.60 -10.60 16 22 C 0.07 1.50 6.68 72.01 0.48 1.98 16 23 C -0.16 -4.07 4.70 30.68 0.14 -3.92 16 24 C 0.02 0.40 9.56 22.57 0.22 0.62 16 25 C -0.26 -6.04 9.97 22.36 0.22 -5.82 16 26 C 0.50 13.53 7.40 84.90 0.63 14.16 16 27 O -0.59 -19.49 16.58 -5.19 -0.09 -19.58 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.45 7.36 -2.39 -0.02 1.44 16 30 H 0.12 0.98 8.00 -2.38 -0.02 0.96 16 31 H 0.20 3.33 7.56 -2.91 -0.02 3.30 16 32 H 0.40 9.36 5.78 -92.71 -0.54 8.82 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.03 1.17 6.47 -2.39 -0.02 1.16 16 35 H 0.38 18.64 6.51 -92.71 -0.60 18.04 16 36 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.07 2.22 7.21 -2.38 -0.02 2.20 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 1.08 7.20 -2.39 -0.02 1.07 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 1.89 8.14 -2.38 -0.02 1.88 16 42 H 0.05 1.07 7.75 -2.39 -0.02 1.05 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 2.47 5.98 -2.39 -0.01 2.46 16 45 H 0.16 2.59 6.50 -2.91 -0.02 2.57 16 46 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -75.40 368.80 1.85 -73.55 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.11 Total: 34.76 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 6.71 Total: 19.50 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -5.03 Total: -126.12 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.74 Total: -49.81 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.40 1.85 -73.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502629452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.393 kcal (2) G-P(sol) polarization free energy of solvation -75.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds