Wall clock time and date at job start Tue Mar 31 2020 19:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35496 * 116.99949 * 2 1 4 4 C 1.39168 * 119.52568 * 179.97438 * 3 2 1 5 5 C 1.37960 * 119.26277 * 179.74198 * 4 3 2 6 6 C 1.40283 * 118.35716 * 0.53628 * 5 4 3 7 7 C 1.47614 * 120.49687 * 179.73489 * 6 5 4 8 8 O 1.21585 * 120.00034 * 359.72567 * 7 6 5 9 9 N 1.34777 * 119.99809 * 179.73033 * 7 6 5 10 10 C 1.46501 * 119.99905 * 185.25427 * 9 7 6 11 11 C 1.53004 * 109.44684 * 54.92221 * 10 9 7 12 12 O 1.42900 * 109.47036 * 54.76394 * 11 10 9 13 13 C 1.53041 * 109.45885 * 174.88802 * 10 9 7 14 14 C 1.53190 * 109.31359 * 58.65637 * 13 10 9 15 15 N 1.46923 * 108.77448 * 54.63084 * 14 13 10 16 16 C 1.36938 * 120.62962 * 126.41418 * 15 14 13 17 17 H 1.07995 * 120.00253 * 210.20314 * 16 15 14 18 18 C 1.38814 * 119.99940 * 30.20351 * 16 15 14 19 19 N 1.31622 * 120.00032 * 15.20203 * 18 16 15 20 20 Si 1.86795 * 120.00132 * 195.20511 * 18 16 15 21 21 H 1.48500 * 109.47181 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47411 * 119.99917 * 20 18 16 23 23 H 1.48502 * 109.46961 * 239.99854 * 20 18 16 24 24 C 1.46920 * 118.74144 * 306.39153 * 15 14 13 25 25 C 1.53037 * 109.45801 * 294.95889 * 10 9 7 26 26 C 1.39529 * 119.00181 * 359.46530 * 6 5 4 27 27 N 1.31658 * 120.62832 * 0.27372 * 26 6 5 28 28 H 1.09006 * 109.46873 * 60.00281 * 1 2 3 29 29 H 1.08998 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47698 * 300.00356 * 1 2 3 31 31 H 1.07994 * 120.36760 * 0.02722 * 4 3 2 32 32 H 1.07996 * 120.82187 * 180.28049 * 5 4 3 33 33 H 0.96995 * 119.99906 * 5.24948 * 9 7 6 34 34 H 1.09000 * 109.46898 * 174.76204 * 11 10 9 35 35 H 1.08997 * 109.47317 * 294.75865 * 11 10 9 36 36 H 0.96699 * 113.99601 * 179.97438 * 12 11 10 37 37 H 1.09004 * 109.49405 * 178.60643 * 13 10 9 38 38 H 1.09006 * 109.49835 * 298.70022 * 13 10 9 39 39 H 1.08996 * 109.58540 * 294.84729 * 14 13 10 40 40 H 1.08998 * 109.58512 * 174.41969 * 14 13 10 41 41 H 0.96998 * 120.00019 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.59171 * 293.82199 * 24 15 14 43 43 H 1.09009 * 109.70695 * 173.46599 * 24 15 14 44 44 H 1.08995 * 109.49922 * 61.29526 * 25 10 9 45 45 H 1.09002 * 109.49417 * 181.39345 * 25 10 9 46 46 H 1.07998 * 119.68470 * 180.29405 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0551 2.5007 -0.0049 6 6 3.2524 3.6512 0.0008 7 6 3.8669 4.9934 0.0012 8 8 5.0773 5.1078 0.0017 9 7 3.0861 6.0919 0.0012 10 6 3.6916 7.4209 -0.1145 11 6 4.5668 7.4745 -1.3683 12 8 3.7913 7.0955 -2.5072 13 6 2.5883 8.4766 -0.2173 14 6 1.6935 8.3968 1.0235 15 7 2.5349 8.5179 2.2219 16 6 2.2573 9.4590 3.1770 17 1 3.0578 9.8875 3.7617 18 6 0.9468 9.8624 3.3938 19 7 -0.0494 9.1488 2.9134 20 14 0.5972 11.4178 4.3673 21 1 1.8794 12.0331 4.7945 22 1 -0.1530 12.3762 3.5164 23 1 -0.2128 11.0804 5.5653 24 6 3.6794 7.6097 2.3762 25 6 4.5521 7.6983 1.1202 26 6 1.8645 3.5077 0.0002 27 7 1.3138 2.3118 -0.0001 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.0209 0.3618 0.0005 32 1 5.1323 2.5776 -0.0091 33 1 2.1233 6.0026 0.0778 34 1 4.9428 8.4883 -1.5059 35 1 5.4059 6.7881 -1.2553 36 1 4.2833 7.1072 -3.3396 37 1 3.0379 9.4677 -0.2786 38 1 1.9902 8.2921 -1.1098 39 1 1.1731 7.4392 1.0377 40 1 0.9673 9.2094 1.0032 41 1 -0.9651 9.4308 3.0646 42 1 3.3211 6.5879 2.5007 43 1 4.2644 7.9006 3.2488 44 1 5.3516 6.9600 1.1798 45 1 4.9831 8.6968 1.0463 46 1 1.2360 4.3860 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505383554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:25 Heat of formation + Delta-G solvation = -54.327501 kcal Electronic energy + Delta-G solvation = -30098.434855 eV Core-core repulsion = 25989.625303 eV Total energy + Delta-G solvation = -4108.809551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98656 -40.01269 -38.20729 -37.18313 -36.10653 -34.10655 -32.65899 -32.35415 -31.05828 -30.11582 -29.73876 -27.52018 -26.70164 -24.36581 -23.87898 -23.41869 -22.33090 -21.30627 -20.49316 -18.82963 -18.65286 -17.76026 -17.20028 -17.06592 -16.59508 -16.24273 -15.19019 -15.00511 -14.92400 -14.82190 -14.54277 -14.26547 -14.03720 -13.77678 -13.51142 -13.39306 -13.18718 -13.02971 -12.93212 -12.60250 -12.42636 -12.07419 -11.79258 -11.48318 -11.35613 -11.25072 -10.97796 -10.76972 -10.41957 -10.32650 -10.15915 -10.10825 -10.01279 -9.83168 -9.72153 -9.58450 -9.11544 -8.78498 -8.56663 -8.47887 -6.65763 -5.81563 -3.25891 0.65729 1.05304 2.83769 2.98862 3.35422 3.39837 3.43899 3.45882 3.81814 4.04793 4.43744 4.48659 4.67972 4.75457 4.87857 4.95346 5.10483 5.12249 5.31334 5.34121 5.40275 5.43070 5.43505 5.53650 5.61168 5.69114 5.73834 5.95747 6.00707 6.07617 6.14825 6.26338 6.30123 6.54926 6.55729 6.63685 6.79610 6.91144 6.95340 7.01753 7.25683 7.55799 7.58412 7.78120 7.78503 7.86878 8.44096 8.47943 9.19520 9.81874 10.39890 11.27061 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.003502 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.871407 B = 7994.035650 C = 9357.163348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.336 3.664 4 C -0.200 4.200 5 C 0.015 3.985 6 C -0.218 4.218 7 C 0.573 3.427 8 O -0.547 6.547 9 N -0.693 5.693 10 C 0.194 3.806 11 C 0.062 3.938 12 O -0.567 6.567 13 C -0.143 4.143 14 C 0.173 3.827 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.152 3.848 25 C -0.143 4.143 26 C 0.182 3.818 27 N -0.542 5.542 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.400 0.600 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.370 0.630 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.017 0.983 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.112 -13.567 -10.194 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.213 6.213 3 C 0.157 3.843 4 C -0.220 4.220 5 C -0.011 4.011 6 C -0.223 4.223 7 C 0.359 3.641 8 O -0.427 6.427 9 N -0.343 5.343 10 C 0.109 3.891 11 C -0.016 4.016 12 O -0.371 6.371 13 C -0.183 4.183 14 C 0.047 3.953 15 N -0.314 5.314 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.026 3.974 25 C -0.183 4.183 26 C 0.025 3.975 27 N -0.265 5.265 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.237 0.763 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.216 0.784 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.498 -13.842 -9.703 17.492 hybrid contribution 0.228 1.013 0.128 1.046 sum 4.726 -12.829 -9.575 16.692 Atomic orbital electron populations 1.22918 0.76846 1.03032 1.02926 1.86196 1.23293 1.24591 1.87192 1.20096 0.89504 0.84775 0.89925 1.21014 0.91791 0.99551 1.09671 1.21500 1.01205 0.89678 0.88717 1.20930 0.94952 0.95248 1.11212 1.17729 0.86597 0.83569 0.76167 1.90670 1.13823 1.86908 1.51291 1.45859 1.10422 1.05371 1.72687 1.20324 0.93956 0.81998 0.92844 1.22748 0.94428 0.98798 0.85666 1.86482 1.41268 1.91852 1.17462 1.22474 0.97590 0.97129 1.01099 1.20732 0.91675 1.00386 0.82494 1.44040 1.30124 1.37409 1.19804 1.19219 0.91298 1.13877 1.13802 0.91754 1.25088 0.95926 0.99151 0.99271 1.70009 0.98218 1.37390 1.49114 0.86235 0.77942 0.83234 0.79420 1.20262 1.21573 1.21741 1.20804 0.89344 0.93189 0.94096 1.22387 0.98685 1.01587 0.95619 1.22701 0.91829 0.93904 0.89083 1.67327 1.40512 0.98617 1.20036 0.92028 0.88560 0.91913 0.83565 0.82888 0.76311 0.93520 0.91612 0.78441 0.91176 0.91808 0.96651 0.89356 0.93691 0.96554 0.92812 0.90838 0.91554 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.37 101.05 1.05 1.38 16 2 O -0.31 -3.46 10.46 -18.18 -0.19 -3.65 16 3 C 0.34 4.19 7.49 -16.96 -0.13 4.07 16 4 C -0.20 -2.21 10.02 -39.34 -0.39 -2.60 16 5 C 0.01 0.18 9.70 -38.91 -0.38 -0.20 16 6 C -0.22 -3.01 5.89 -104.82 -0.62 -3.63 16 7 C 0.57 9.09 7.18 -12.43 -0.09 9.00 16 8 O -0.55 -9.61 12.72 5.29 0.07 -9.55 16 9 N -0.69 -11.11 3.85 -48.57 -0.19 -11.29 16 10 C 0.19 3.26 0.44 -131.78 -0.06 3.21 16 11 C 0.06 0.92 5.54 37.16 0.21 1.13 16 12 O -0.57 -7.85 12.94 -35.23 -0.46 -8.31 16 13 C -0.14 -2.62 4.89 -26.61 -0.13 -2.75 16 14 C 0.17 3.87 5.00 -3.71 -0.02 3.85 16 15 N -0.59 -14.28 2.98 -172.33 -0.51 -14.80 16 16 C -0.25 -6.77 9.57 -15.06 -0.14 -6.92 16 17 H 0.06 1.72 7.87 -52.49 -0.41 1.31 16 18 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 19 N -0.90 -25.42 11.24 55.49 0.62 -24.80 16 20 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.15 3.21 6.25 -3.71 -0.02 3.19 16 25 C -0.14 -2.58 4.74 -26.61 -0.13 -2.70 16 26 C 0.18 2.44 10.70 -17.14 -0.18 2.25 16 27 N -0.54 -7.28 9.18 -12.96 -0.12 -7.40 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.15 1.66 7.73 -52.49 -0.41 1.26 16 33 H 0.40 6.25 5.20 -40.82 -0.21 6.04 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.03 6.17 -51.93 -0.32 0.71 16 36 H 0.37 3.47 9.12 45.56 0.42 3.88 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.11 7.80 -51.93 -0.40 0.70 16 39 H 0.02 0.35 6.84 -51.93 -0.36 0.00 16 40 H 0.09 2.25 6.17 -51.93 -0.32 1.93 16 41 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 43 H 0.05 1.14 7.94 -51.92 -0.41 0.73 16 44 H 0.07 1.33 6.40 -51.93 -0.33 0.99 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.16 2.01 6.42 -52.49 -0.34 1.67 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -31.89 367.55 -6.98 -38.86 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.59 Total: 9.75 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.12 Total: 9.30 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.20 Total: -58.28 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.58 Total: -21.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.89 -6.98 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505383554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.466 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds