Wall clock time and date at job start Tue Mar 31 2020 19:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35496 * 116.99949 * 2 1 4 4 C 1.39168 * 119.52568 * 179.97438 * 3 2 1 5 5 C 1.37960 * 119.26277 * 179.74198 * 4 3 2 6 6 C 1.40283 * 118.35716 * 0.53628 * 5 4 3 7 7 C 1.47614 * 120.49687 * 179.73489 * 6 5 4 8 8 O 1.21585 * 120.00034 * 359.72567 * 7 6 5 9 9 N 1.34777 * 119.99809 * 179.73033 * 7 6 5 10 10 C 1.46501 * 119.99905 * 185.25427 * 9 7 6 11 11 C 1.53004 * 109.44684 * 54.92221 * 10 9 7 12 12 O 1.42900 * 109.47036 * 54.76394 * 11 10 9 13 13 C 1.53041 * 109.45885 * 174.88802 * 10 9 7 14 14 C 1.53190 * 109.31359 * 58.65637 * 13 10 9 15 15 N 1.46923 * 108.77448 * 54.63084 * 14 13 10 16 16 C 1.36938 * 120.62962 * 126.41418 * 15 14 13 17 17 H 1.07995 * 120.00253 * 210.20314 * 16 15 14 18 18 C 1.38814 * 119.99940 * 30.20351 * 16 15 14 19 19 N 1.31622 * 120.00032 * 15.20203 * 18 16 15 20 20 Si 1.86795 * 120.00132 * 195.20511 * 18 16 15 21 21 H 1.48500 * 109.47181 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47411 * 119.99917 * 20 18 16 23 23 H 1.48502 * 109.46961 * 239.99854 * 20 18 16 24 24 C 1.46920 * 118.74144 * 306.39153 * 15 14 13 25 25 C 1.53037 * 109.45801 * 294.95889 * 10 9 7 26 26 C 1.39529 * 119.00181 * 359.46530 * 6 5 4 27 27 N 1.31658 * 120.62832 * 0.27372 * 26 6 5 28 28 H 1.09006 * 109.46873 * 60.00281 * 1 2 3 29 29 H 1.08998 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47698 * 300.00356 * 1 2 3 31 31 H 1.07994 * 120.36760 * 0.02722 * 4 3 2 32 32 H 1.07996 * 120.82187 * 180.28049 * 5 4 3 33 33 H 0.96995 * 119.99906 * 5.24948 * 9 7 6 34 34 H 1.09000 * 109.46898 * 174.76204 * 11 10 9 35 35 H 1.08997 * 109.47317 * 294.75865 * 11 10 9 36 36 H 0.96699 * 113.99601 * 179.97438 * 12 11 10 37 37 H 1.09004 * 109.49405 * 178.60643 * 13 10 9 38 38 H 1.09006 * 109.49835 * 298.70022 * 13 10 9 39 39 H 1.08996 * 109.58540 * 294.84729 * 14 13 10 40 40 H 1.08998 * 109.58512 * 174.41969 * 14 13 10 41 41 H 0.96998 * 120.00019 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.59171 * 293.82199 * 24 15 14 43 43 H 1.09009 * 109.70695 * 173.46599 * 24 15 14 44 44 H 1.08995 * 109.49922 * 61.29526 * 25 10 9 45 45 H 1.09002 * 109.49417 * 181.39345 * 25 10 9 46 46 H 1.07998 * 119.68470 * 180.29405 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0551 2.5007 -0.0049 6 6 3.2524 3.6512 0.0008 7 6 3.8669 4.9934 0.0012 8 8 5.0773 5.1078 0.0017 9 7 3.0861 6.0919 0.0012 10 6 3.6916 7.4209 -0.1145 11 6 4.5668 7.4745 -1.3683 12 8 3.7913 7.0955 -2.5072 13 6 2.5883 8.4766 -0.2173 14 6 1.6935 8.3968 1.0235 15 7 2.5349 8.5179 2.2219 16 6 2.2573 9.4590 3.1770 17 1 3.0578 9.8875 3.7617 18 6 0.9468 9.8624 3.3938 19 7 -0.0494 9.1488 2.9134 20 14 0.5972 11.4178 4.3673 21 1 1.8794 12.0331 4.7945 22 1 -0.1530 12.3762 3.5164 23 1 -0.2128 11.0804 5.5653 24 6 3.6794 7.6097 2.3762 25 6 4.5521 7.6983 1.1202 26 6 1.8645 3.5077 0.0002 27 7 1.3138 2.3118 -0.0001 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.0209 0.3618 0.0005 32 1 5.1323 2.5776 -0.0091 33 1 2.1233 6.0026 0.0778 34 1 4.9428 8.4883 -1.5059 35 1 5.4059 6.7881 -1.2553 36 1 4.2833 7.1072 -3.3396 37 1 3.0379 9.4677 -0.2786 38 1 1.9902 8.2921 -1.1098 39 1 1.1731 7.4392 1.0377 40 1 0.9673 9.2094 1.0032 41 1 -0.9651 9.4308 3.0646 42 1 3.3211 6.5879 2.5007 43 1 4.2644 7.9006 3.2488 44 1 5.3516 6.9600 1.1798 45 1 4.9831 8.6968 1.0463 46 1 1.2360 4.3860 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505383554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:24 Heat of formation + Delta-G solvation = -78.863099 kcal Electronic energy + Delta-G solvation = -30099.498798 eV Core-core repulsion = 25989.625303 eV Total energy + Delta-G solvation = -4109.873495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04394 -41.20888 -39.30992 -38.42134 -37.39849 -35.64677 -33.88927 -33.62944 -32.54581 -31.69161 -31.09694 -28.44967 -28.19005 -25.63541 -25.37653 -24.40041 -23.95275 -22.70342 -21.91599 -20.24472 -19.61367 -19.02947 -18.63713 -18.10131 -17.98284 -17.11092 -16.83723 -16.34274 -16.29013 -16.03010 -15.70836 -15.57020 -15.26356 -15.18806 -14.90796 -14.70244 -14.46610 -14.28352 -14.16266 -13.89179 -13.77521 -13.25236 -13.18906 -13.00359 -12.78400 -12.62755 -12.57396 -12.23000 -12.19908 -11.97919 -11.81695 -11.44908 -11.42614 -11.12900 -11.05206 -10.83329 -10.54997 -10.38841 -9.98701 -9.61612 -8.62823 -7.86565 -5.33690 -0.35946 0.11307 1.46674 1.49372 1.59063 1.85529 1.99898 2.17886 2.51976 2.76805 3.10412 3.27512 3.33428 3.61160 3.70882 3.77451 3.88989 4.00820 4.02071 4.08474 4.28830 4.42135 4.43831 4.46757 4.56113 4.57268 4.65966 4.68834 4.73678 4.75115 4.79226 4.92437 4.98891 5.06942 5.14006 5.21925 5.24713 5.28953 5.46127 5.63775 5.66069 5.73768 6.06375 6.41519 6.58450 6.62504 6.92837 7.17234 7.23348 7.86143 8.39331 9.19477 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.003502 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.871407 B = 7994.035650 C = 9357.163348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.327 3.673 4 C -0.190 4.190 5 C 0.016 3.984 6 C -0.232 4.232 7 C 0.574 3.426 8 O -0.565 6.565 9 N -0.695 5.695 10 C 0.194 3.806 11 C 0.074 3.926 12 O -0.577 6.577 13 C -0.126 4.126 14 C 0.181 3.819 15 N -0.605 5.605 16 C -0.264 4.264 17 H 0.062 0.938 18 C -0.043 4.043 19 N -0.930 5.930 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.294 1.294 24 C 0.153 3.847 25 C -0.130 4.130 26 C 0.177 3.823 27 N -0.556 5.556 28 H 0.059 0.941 29 H 0.128 0.872 30 H 0.054 0.946 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.401 0.599 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.392 0.608 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.006 0.994 40 H 0.054 0.946 41 H 0.250 0.750 42 H 0.007 0.993 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 -14.405 -11.093 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.215 6.215 3 C 0.148 3.852 4 C -0.210 4.210 5 C -0.009 4.009 6 C -0.238 4.238 7 C 0.362 3.638 8 O -0.447 6.447 9 N -0.345 5.345 10 C 0.108 3.892 11 C -0.005 4.005 12 O -0.384 6.384 13 C -0.165 4.165 14 C 0.056 3.944 15 N -0.329 5.329 16 C -0.394 4.394 17 H 0.080 0.920 18 C -0.239 4.239 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.221 1.221 24 C 0.028 3.972 25 C -0.170 4.170 26 C 0.020 3.980 27 N -0.280 5.280 28 H 0.077 0.923 29 H 0.146 0.854 30 H 0.073 0.927 31 H 0.193 0.807 32 H 0.183 0.817 33 H 0.237 0.763 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.241 0.759 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.471 -14.696 -10.629 18.944 hybrid contribution -0.099 1.155 0.409 1.230 sum 5.372 -13.541 -10.219 17.794 Atomic orbital electron populations 1.23130 0.75574 1.04983 1.02417 1.86203 1.24566 1.23888 1.86877 1.20430 0.90280 0.84896 0.89604 1.21299 0.91426 1.00246 1.08046 1.21681 1.01716 0.89427 0.88111 1.20843 0.95278 0.94761 1.12898 1.17962 0.86345 0.84073 0.75434 1.90651 1.14485 1.87255 1.52280 1.45849 1.10487 1.05304 1.72843 1.20264 0.93447 0.81923 0.93595 1.22501 0.93384 0.99538 0.85061 1.86426 1.41858 1.91844 1.18299 1.22232 0.97372 0.97773 0.99170 1.20545 0.91652 0.98431 0.83807 1.44246 1.30938 1.37662 1.20033 1.19487 0.91396 1.14404 1.14148 0.92041 1.25768 0.95782 1.01763 1.00612 1.70145 0.98243 1.38737 1.50450 0.85267 0.77767 0.79923 0.77820 1.19350 1.21535 1.22096 1.20831 0.88774 0.91948 0.95669 1.22206 0.98170 1.01946 0.94634 1.22737 0.91850 0.94163 0.89260 1.67320 1.41069 0.98896 1.20670 0.92258 0.85432 0.92688 0.80656 0.81689 0.76280 0.92020 0.92154 0.75946 0.91243 0.90614 0.97648 0.92717 0.94080 0.97507 0.93387 0.90473 0.91129 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.37 113.37 1.18 1.71 16 2 O -0.31 -6.45 10.46 -87.97 -0.92 -7.37 16 3 C 0.33 7.70 7.49 84.83 0.64 8.34 16 4 C -0.19 -3.80 10.02 22.43 0.22 -3.58 16 5 C 0.02 0.36 9.70 22.70 0.22 0.58 16 6 C -0.23 -6.25 5.89 -19.99 -0.12 -6.37 16 7 C 0.57 17.80 7.18 86.72 0.62 18.42 16 8 O -0.57 -19.24 12.72 -3.99 -0.05 -19.29 16 9 N -0.69 -21.94 3.85 -425.84 -1.64 -23.58 16 10 C 0.19 6.30 0.44 3.63 0.00 6.30 16 11 C 0.07 2.03 5.54 71.98 0.40 2.43 16 12 O -0.58 -14.63 12.94 -148.98 -1.93 -16.56 16 13 C -0.13 -4.52 4.89 30.67 0.15 -4.37 16 14 C 0.18 8.25 5.00 86.36 0.43 8.69 16 15 N -0.61 -29.65 2.98 -699.12 -2.09 -31.74 16 16 C -0.26 -14.35 9.57 84.03 0.80 -13.54 16 17 H 0.06 3.31 7.87 -2.91 -0.02 3.29 16 18 C -0.04 -2.37 4.94 84.86 0.42 -1.95 16 19 N -0.93 -53.49 11.24 21.65 0.24 -53.24 16 20 Si 0.96 44.34 29.58 68.60 2.03 46.37 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.15 6.52 6.25 86.36 0.54 7.06 16 25 C -0.13 -4.58 4.74 30.67 0.15 -4.43 16 26 C 0.18 4.71 10.70 85.03 0.91 5.62 16 27 N -0.56 -14.63 9.18 -307.81 -2.82 -17.45 16 28 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 29 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.17 3.27 7.73 -2.91 -0.02 3.25 16 33 H 0.40 12.58 5.20 -92.71 -0.48 12.10 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.77 6.17 -2.39 -0.01 1.75 16 36 H 0.39 6.25 9.12 -74.06 -0.68 5.57 16 37 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.08 2.54 7.80 -2.38 -0.02 2.52 16 39 H 0.01 0.26 6.84 -2.39 -0.02 0.24 16 40 H 0.05 2.86 6.17 -2.39 -0.01 2.84 16 41 H 0.25 13.95 8.31 -92.71 -0.77 13.17 16 42 H 0.01 0.31 7.74 -2.39 -0.02 0.29 16 43 H 0.05 2.05 7.94 -2.38 -0.02 2.03 16 44 H 0.08 2.70 6.40 -2.39 -0.02 2.68 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.17 4.15 6.42 -2.91 -0.02 4.13 16 Total: -1.00 -68.01 367.55 -0.74 -68.75 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.13 Total: 29.21 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 6.56 Total: 24.91 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -6.31 Total: -126.02 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -2.90 Total: -43.21 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -68.01 -0.74 -68.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505383554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds