Wall clock time and date at job start Tue Mar 31 2020 18:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99644 * 2 1 4 4 H 1.08000 * 119.99922 * 154.97006 * 3 2 1 5 5 C 1.38808 * 120.00155 * 334.96659 * 3 2 1 6 6 N 1.31620 * 120.00147 * 351.34575 * 5 3 2 7 7 Si 1.86801 * 119.99994 * 171.62000 * 5 3 2 8 8 H 1.48508 * 109.47133 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47006 * 120.00060 * 7 5 3 10 10 H 1.48495 * 109.47436 * 240.00497 * 7 5 3 11 11 C 1.46496 * 120.00092 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47298 * 278.62900 * 11 2 1 13 13 H 1.09004 * 109.87238 * 66.36583 * 12 11 2 14 14 C 1.54323 * 109.88282 * 187.53853 * 12 11 2 15 15 C 1.55166 * 102.94232 * 141.61195 * 14 12 11 16 16 C 1.54910 * 101.57731 * 324.50109 * 15 14 12 17 17 N 1.47021 * 109.88379 * 305.34762 * 12 11 2 18 18 C 1.34780 * 125.64833 * 61.68067 * 17 12 11 19 19 O 1.21616 * 119.99771 * 6.15672 * 18 17 12 20 20 C 1.47379 * 120.00131 * 186.15850 * 18 17 12 21 21 C 1.47019 * 127.19124 * 5.91658 * 20 18 17 22 22 C 1.34177 * 105.95550 * 180.02562 * 21 20 18 23 23 O 1.34218 * 109.12357 * 0.02562 * 22 21 20 24 24 C 1.33657 * 110.90566 * 359.72257 * 23 22 21 25 25 C 1.50702 * 125.80014 * 180.28760 * 24 23 22 26 26 C 1.50698 * 109.47211 * 270.18885 * 25 24 23 27 27 N 1.34775 * 120.00312 * 179.97438 * 26 25 24 28 28 O 1.21283 * 120.00045 * 0.02562 * 26 25 24 29 29 H 1.09000 * 109.47548 * 93.61769 * 1 2 3 30 30 H 1.09004 * 109.47029 * 213.62352 * 1 2 3 31 31 H 1.09003 * 109.47073 * 333.61634 * 1 2 3 32 32 H 0.96998 * 119.99746 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47175 * 38.63481 * 11 2 1 34 34 H 1.09007 * 109.47194 * 158.63190 * 11 2 1 35 35 H 1.08995 * 110.72385 * 259.97430 * 14 12 11 36 36 H 1.09000 * 110.71897 * 23.25371 * 14 12 11 37 37 H 1.09003 * 111.00235 * 206.42588 * 15 14 12 38 38 H 1.09000 * 110.99962 * 82.57467 * 15 14 12 39 39 H 1.09000 * 110.36297 * 278.16596 * 16 15 14 40 40 H 1.09003 * 110.36078 * 155.85020 * 16 15 14 41 41 H 1.08005 * 127.02267 * 359.97438 * 21 20 18 42 42 H 1.07996 * 125.44142 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47186 * 30.19421 * 25 24 23 44 44 H 1.09003 * 109.47217 * 150.19515 * 25 24 23 45 45 H 0.96999 * 119.99989 * 0.02562 * 27 26 25 46 46 H 0.96997 * 120.00575 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1535 1.2299 0.3957 5 6 1.5533 2.3316 -0.5087 6 7 0.4034 2.2486 -1.1437 7 14 2.3866 3.9902 -0.2987 8 1 3.6629 3.8131 0.4398 9 1 2.6653 4.5767 -1.6341 10 1 1.4946 4.8993 0.4649 11 6 2.1975 -1.2687 0.0006 12 6 2.2651 -1.8179 1.4269 13 1 1.2658 -2.0900 1.7670 14 6 3.1918 -3.0511 1.4711 15 6 3.9325 -2.8810 2.8239 16 6 4.0879 -1.3417 2.9018 17 7 2.8410 -0.8067 2.3254 18 6 2.3155 0.4079 2.5805 19 8 1.2224 0.7029 2.1366 20 6 3.0656 1.3786 3.3974 21 6 4.4370 1.2381 3.9084 22 6 4.6920 2.3627 4.5944 23 8 3.6140 3.1609 4.5466 24 6 2.6342 2.5969 3.8336 25 6 1.2815 3.2027 3.5607 26 6 0.3224 2.8021 4.6518 27 7 -0.9550 3.2306 4.6171 28 8 0.7001 2.0947 5.5617 29 1 -0.3634 -0.0648 -1.0256 30 1 -0.3633 -0.8558 0.5691 31 1 -0.3633 0.9206 0.4567 32 1 -0.0134 3.0492 -1.4988 33 1 1.6840 -1.9850 -0.6407 34 1 3.2080 -1.1050 -0.3740 35 1 2.6089 -3.9721 1.4638 36 1 3.8973 -3.0333 0.6404 37 1 4.9057 -3.3714 2.8009 38 1 3.3277 -3.2550 3.6501 39 1 4.9471 -1.0170 2.3148 40 1 4.1937 -1.0232 3.9389 41 1 5.1029 0.4004 3.7622 42 1 5.6169 2.5895 5.1037 43 1 1.3685 4.2889 3.5341 44 1 0.9099 2.8443 2.6007 45 1 -1.2570 3.7967 3.8896 46 1 -1.5723 2.9731 5.3195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505443249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:56 Heat of formation + Delta-G solvation = 8.268513 kcal Electronic energy + Delta-G solvation = -32097.390430 eV Core-core repulsion = 27991.295245 eV Total energy + Delta-G solvation = -4106.095184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.17536 -39.36411 -39.05228 -36.52400 -35.00239 -33.47633 -32.64455 -31.76472 -31.26678 -30.67864 -28.95838 -27.15974 -25.67385 -25.02816 -23.59341 -21.89262 -21.49747 -20.81764 -20.60462 -19.34761 -18.29664 -17.25454 -16.80157 -16.74166 -16.63222 -15.78096 -15.47688 -15.41353 -14.91609 -14.74513 -14.47270 -13.68457 -13.60711 -13.42421 -13.23195 -13.04443 -12.83824 -12.77277 -12.50822 -12.30682 -11.86840 -11.77263 -11.51618 -11.28405 -11.17872 -10.81362 -10.74940 -10.60067 -10.49170 -10.30405 -9.93317 -9.83818 -9.72192 -9.62025 -9.51419 -9.27154 -8.69666 -8.40831 -8.12049 -7.70957 -6.22756 -5.49748 -2.89904 1.90672 2.52135 2.88275 3.11164 3.37564 3.48894 3.51543 3.77332 3.84913 4.39362 4.63135 4.79081 4.86678 4.91115 5.17306 5.19151 5.24357 5.39375 5.46431 5.59042 5.65198 5.71007 5.81180 5.83916 5.88582 5.92146 6.03071 6.14061 6.19570 6.21370 6.34783 6.40407 6.44177 6.62804 6.69384 6.92921 6.93710 7.15804 7.25023 7.44436 7.47602 7.77753 7.90660 8.10637 8.44769 8.50324 8.67347 9.39411 9.49357 10.13596 10.64063 11.56604 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.007556 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.438832 B = 3704.647447 C = 5021.841450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.582 5.582 3 C -0.201 4.201 4 H 0.053 0.947 5 C 0.002 3.998 6 N -0.910 5.910 7 Si 0.877 3.123 8 H -0.280 1.280 9 H -0.294 1.294 10 H -0.290 1.290 11 C 0.143 3.857 12 C 0.118 3.882 13 H 0.060 0.940 14 C -0.126 4.126 15 C -0.133 4.133 16 C 0.098 3.902 17 N -0.607 5.607 18 C 0.595 3.405 19 O -0.456 6.456 20 C -0.192 4.192 21 C -0.201 4.201 22 C -0.045 4.045 23 O -0.178 6.178 24 C 0.076 3.924 25 C -0.075 4.075 26 C 0.534 3.466 27 N -0.853 5.853 28 O -0.542 6.542 29 H 0.002 0.998 30 H -0.020 1.020 31 H 0.063 0.937 32 H 0.245 0.755 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.159 0.841 42 H 0.202 0.798 43 H 0.105 0.895 44 H 0.157 0.843 45 H 0.404 0.596 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -3.611 10.450 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.303 5.303 3 C -0.331 4.331 4 H 0.071 0.929 5 C -0.194 4.194 6 N -0.558 5.558 7 Si 0.708 3.292 8 H -0.205 1.205 9 H -0.221 1.221 10 H -0.217 1.217 11 C 0.014 3.986 12 C 0.012 3.988 13 H 0.079 0.921 14 C -0.165 4.165 15 C -0.172 4.172 16 C -0.025 4.025 17 N -0.345 5.345 18 C 0.383 3.617 19 O -0.327 6.327 20 C -0.197 4.197 21 C -0.220 4.220 22 C -0.111 4.111 23 O -0.075 6.075 24 C 0.024 3.976 25 C -0.115 4.115 26 C 0.319 3.681 27 N -0.417 5.417 28 O -0.419 6.419 29 H 0.020 0.980 30 H -0.001 1.001 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.177 0.823 42 H 0.218 0.782 43 H 0.123 0.877 44 H 0.175 0.825 45 H 0.232 0.768 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.733 -3.364 10.762 12.229 hybrid contribution 0.413 1.030 -0.062 1.112 sum 5.147 -2.334 10.700 12.101 Atomic orbital electron populations 1.20500 0.82437 0.97218 0.95477 1.43640 1.01861 0.99766 1.85048 1.18918 0.97504 0.86393 1.30315 0.92902 1.24768 0.97688 0.97504 0.99482 1.70055 1.18190 1.26427 1.41119 0.86574 0.79149 0.86070 0.77416 1.20495 1.22129 1.21690 1.21095 0.96369 0.89369 0.91812 1.22404 0.95769 0.86647 0.94024 0.92143 1.22652 0.98750 0.97741 0.97349 1.22761 1.00651 0.95644 0.98100 1.22442 0.88519 0.93178 0.98394 1.47843 1.24426 1.15322 1.46866 1.16311 0.85814 0.79625 0.79962 1.90848 1.19582 1.75290 1.46992 1.21288 0.95502 0.96648 1.06226 1.23244 0.96330 1.00076 1.02397 1.23707 0.90933 0.91258 1.05219 1.83654 1.21373 1.44497 1.57971 1.21501 0.89594 0.92297 0.94255 1.20413 0.86945 1.02239 1.01855 1.20235 0.82892 0.78985 0.85956 1.43708 1.11791 1.55609 1.30588 1.90729 1.77542 1.37040 1.36540 0.97997 1.00110 0.91851 0.94409 0.94624 0.93347 0.90931 0.90788 0.90671 0.91148 0.92363 0.90887 0.82315 0.78176 0.87688 0.82521 0.76755 0.76951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 4.92 7.51 59.85 0.45 5.37 16 2 N -0.58 -14.81 1.68 -181.12 -0.30 -15.11 16 3 C -0.20 -5.48 6.07 -15.06 -0.09 -5.57 16 4 H 0.05 1.49 7.11 -52.49 -0.37 1.12 16 5 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 6 N -0.91 -26.68 10.65 55.49 0.59 -26.08 16 7 Si 0.88 21.93 29.56 -169.99 -5.03 16.91 16 8 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.14 3.00 5.35 -4.05 -0.02 2.98 16 12 C 0.12 2.13 3.30 -66.96 -0.22 1.91 16 13 H 0.06 1.19 8.03 -51.93 -0.42 0.78 16 14 C -0.13 -1.65 6.48 -24.89 -0.16 -1.82 16 15 C -0.13 -1.56 7.09 -24.58 -0.17 -1.73 16 16 C 0.10 1.41 5.13 -2.53 -0.01 1.40 16 17 N -0.61 -11.48 3.06 -164.29 -0.50 -11.98 16 18 C 0.59 13.00 5.31 -12.54 -0.07 12.94 16 19 O -0.46 -11.17 8.91 5.26 0.05 -11.13 16 20 C -0.19 -3.87 6.20 -103.28 -0.64 -4.52 16 21 C -0.20 -3.25 9.29 -37.46 -0.35 -3.60 16 22 C -0.05 -0.66 12.03 29.30 0.35 -0.31 16 23 O -0.18 -3.17 10.52 7.63 0.08 -3.09 16 24 C 0.08 1.50 5.87 -34.97 -0.21 1.29 16 25 C -0.08 -1.37 5.77 -29.03 -0.17 -1.54 16 26 C 0.53 9.31 8.09 -10.99 -0.09 9.22 16 27 N -0.85 -10.84 8.87 31.22 0.28 -10.56 16 28 O -0.54 -11.33 16.87 5.56 0.09 -11.24 16 29 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 30 H -0.02 -0.48 7.98 -51.93 -0.41 -0.90 16 31 H 0.06 1.80 6.09 -51.93 -0.32 1.49 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.05 1.03 7.84 -51.92 -0.41 0.62 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.93 7.76 -51.93 -0.40 0.52 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.80 7.78 -51.93 -0.40 0.40 16 40 H 0.07 1.00 5.92 -51.93 -0.31 0.69 16 41 H 0.16 2.10 5.21 -52.48 -0.27 1.83 16 42 H 0.20 1.93 8.06 -52.49 -0.42 1.50 16 43 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.16 3.28 6.39 -51.93 -0.33 2.95 16 45 H 0.40 4.18 8.83 -40.82 -0.36 3.82 16 46 H 0.40 4.34 8.93 -40.82 -0.36 3.98 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -36.23 362.80 -7.21 -43.45 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.45 Total: 7.39 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: -1.49 Total: 15.98 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 0.06 Total: -63.74 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.22 Total: -25.45 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.23 -7.21 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505443249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.714 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds