Wall clock time and date at job start Tue Mar 31 2020 19:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35504 * 116.99589 * 2 1 4 4 C 1.39212 * 120.90343 * 0.02864 * 3 2 1 5 5 C 1.37900 * 119.39076 * 179.97438 * 4 3 2 6 6 N 1.32076 * 121.29258 * 359.97438 * 5 4 3 7 7 C 1.32184 * 121.97943 * 359.72292 * 6 5 4 8 8 O 1.35421 * 119.78421 * 180.29256 * 7 6 5 9 9 C 1.42906 * 116.99580 * 0.24610 * 8 7 6 10 10 C 1.40295 * 120.44062 * 0.53984 * 7 6 5 11 11 C 1.47234 * 120.65303 * 179.74983 * 10 7 6 12 12 O 1.21623 * 120.00192 * 269.72171 * 11 10 7 13 13 N 1.34777 * 119.99507 * 89.99406 * 11 10 7 14 14 C 1.46505 * 119.99724 * 179.72631 * 13 11 10 15 15 C 1.53791 * 113.61264 * 254.13682 * 14 13 11 16 16 C 1.54049 * 86.98640 * 270.83894 * 15 14 13 17 17 C 1.52997 * 113.62029 * 220.02291 * 16 15 14 18 18 N 1.46498 * 109.46927 * 272.49747 * 17 16 15 19 19 C 1.36939 * 119.99677 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99895 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00248 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47075 * 90.00152 * 23 21 19 25 25 H 1.48503 * 109.46850 * 209.99996 * 23 21 19 26 26 H 1.48498 * 109.47110 * 329.99835 * 23 21 19 27 27 C 1.53775 * 113.61431 * 156.53259 * 14 13 11 28 28 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47343 * 299.99936 * 1 2 3 30 30 H 1.09000 * 109.46989 * 60.00066 * 1 2 3 31 31 H 1.08002 * 120.30330 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.35650 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47276 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.46995 * 299.99765 * 9 8 7 35 35 H 1.08993 * 109.47094 * 59.99964 * 9 8 7 36 36 H 0.97000 * 120.00483 * 359.73063 * 13 11 10 37 37 H 1.08996 * 112.84787 * 25.33042 * 14 13 11 38 38 H 1.08997 * 113.60978 * 25.43765 * 15 14 13 39 39 H 1.09004 * 113.60588 * 156.33413 * 15 14 13 40 40 H 1.08998 * 113.68827 * 89.12900 * 16 15 14 41 41 H 1.09004 * 109.46774 * 32.49316 * 17 16 15 42 42 H 1.08993 * 109.47146 * 152.49224 * 17 16 15 43 43 H 0.96996 * 119.99990 * 359.97438 * 18 17 16 44 44 H 0.97003 * 120.00268 * 180.02562 * 22 21 19 45 45 H 1.09003 * 113.61665 * 203.66359 * 27 14 13 46 46 H 1.08998 * 113.61372 * 334.48462 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 0.0006 5 6 1.9625 3.5985 0.0011 6 7 3.2817 3.6626 0.0016 7 6 4.0354 2.5767 0.0070 8 8 5.3845 2.6943 0.0132 9 6 5.9202 4.0191 0.0190 10 6 3.4471 1.3031 0.0011 11 6 4.2822 0.0905 0.0015 12 8 4.6274 -0.4105 -1.0516 13 7 4.6593 -0.4675 1.1690 14 6 5.4853 -1.6775 1.1694 15 6 4.7121 -2.9509 1.5513 16 6 5.0779 -2.6364 3.0143 17 6 5.4521 -3.8740 3.8323 18 7 4.2409 -4.4624 4.4095 19 6 4.3291 -5.5868 5.1861 20 1 5.2915 -6.0396 5.3734 21 6 3.1816 -6.1440 5.7335 22 7 3.2663 -7.2244 6.4804 23 14 1.5170 -5.3603 5.4101 24 1 0.9208 -5.9522 4.1855 25 1 0.6199 -5.6086 6.5671 26 1 1.6871 -3.8973 5.2206 27 6 6.2930 -1.8715 2.4635 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2249 2.3528 0.0007 32 1 1.3880 4.5130 0.0020 33 1 7.0091 3.9708 0.0232 34 1 5.5840 4.5509 -0.8711 35 1 5.5761 4.5462 0.9088 36 1 4.3839 -0.0679 2.0089 37 1 6.0809 -1.7837 0.2628 38 1 3.6436 -2.8914 1.3444 39 1 5.1669 -3.8672 1.1748 40 1 4.3527 -1.9985 3.5196 41 1 5.9377 -4.6042 3.1848 42 1 6.1341 -3.5879 4.6328 43 1 3.3766 -4.0555 4.2416 44 1 2.4644 -7.6140 6.8626 45 1 7.1792 -2.4932 2.3361 46 1 6.5011 -0.9411 2.9919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505506597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:09 Heat of formation + Delta-G solvation = -29.649455 kcal Electronic energy + Delta-G solvation = -28961.406882 eV Core-core repulsion = 24853.667451 eV Total energy + Delta-G solvation = -4107.739431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50638 -39.91646 -39.58830 -38.12719 -37.70456 -34.64760 -33.23924 -32.13660 -31.24475 -30.99317 -28.39377 -27.41376 -27.09932 -25.52299 -25.04517 -23.06913 -22.91959 -21.38792 -21.17640 -19.37655 -19.16612 -18.14780 -17.85580 -17.46747 -16.94058 -16.67787 -16.06539 -15.96532 -15.59559 -15.17187 -14.82112 -14.62085 -14.39839 -14.24890 -14.07154 -13.77144 -13.68611 -13.38979 -13.13196 -12.59983 -12.44789 -12.27657 -12.23627 -12.13708 -11.93068 -11.71679 -11.55953 -11.36952 -10.88230 -10.65371 -10.51577 -10.20796 -10.14993 -9.89115 -9.78666 -9.55334 -9.38681 -9.06079 -8.97968 -8.83760 -7.18183 -5.74130 -3.08572 0.49197 0.83453 2.21034 2.49352 2.97556 3.05599 3.25426 3.37853 3.40941 3.45346 3.87469 4.16024 4.43616 4.54322 4.61249 4.66084 4.67121 4.70958 4.75595 4.89122 4.93623 4.96092 5.08031 5.09359 5.09763 5.18381 5.28500 5.44005 5.56169 5.61199 5.71985 5.75112 5.91420 5.92795 6.01751 6.18832 6.21315 6.34309 6.62258 6.63472 6.73733 6.74547 6.88573 7.33686 7.45953 8.03383 8.16220 8.45480 9.25277 9.97911 10.18545 11.44623 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.002939 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.037130 B = 9525.374968 C =10803.302586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.296 6.296 3 C 0.236 3.764 4 C -0.300 4.300 5 C 0.191 3.809 6 N -0.561 5.561 7 C 0.388 3.612 8 O -0.295 6.295 9 C 0.040 3.960 10 C -0.239 4.239 11 C 0.592 3.408 12 O -0.528 6.528 13 N -0.697 5.697 14 C 0.117 3.883 15 C -0.141 4.141 16 C -0.119 4.119 17 C 0.167 3.833 18 N -0.756 5.756 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C -0.135 4.135 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.097 0.903 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 26.768 -15.070 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.205 6.205 3 C 0.181 3.819 4 C -0.322 4.322 5 C 0.036 3.964 6 N -0.289 5.289 7 C 0.209 3.791 8 O -0.200 6.200 9 C -0.055 4.055 10 C -0.246 4.246 11 C 0.377 3.623 12 O -0.404 6.404 13 N -0.347 5.347 14 C 0.012 3.988 15 C -0.179 4.179 16 C -0.138 4.138 17 C 0.040 3.960 18 N -0.401 5.401 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.174 4.174 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.192 0.808 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.399 26.558 -15.714 30.890 hybrid contribution -2.239 0.260 0.347 2.280 sum -3.638 26.817 -15.367 31.122 Atomic orbital electron populations 1.23290 0.76587 1.05258 1.01934 1.86117 1.22739 1.25435 1.86209 1.18883 0.89849 0.85377 0.87786 1.22013 1.01954 0.92409 1.15777 1.22298 0.88424 0.97383 0.88289 1.67441 1.07993 1.30262 1.23197 1.19326 0.84583 0.87422 0.87788 1.86252 1.15234 1.32089 1.86468 1.22971 0.98812 0.80945 1.02754 1.18909 0.91354 0.93483 1.20829 1.17354 0.78769 0.82174 0.84035 1.90793 1.55337 1.62970 1.31303 1.45605 1.52969 1.28002 1.08117 1.21943 0.92898 0.84402 0.99543 1.23495 1.00980 0.97388 0.96052 1.22863 0.97336 0.98067 0.95523 1.20617 0.89855 0.91269 0.94259 1.42707 1.03711 1.32390 1.61292 1.19093 0.95490 1.00827 1.21704 0.89251 1.24674 0.97314 0.97539 0.99837 1.69703 1.28040 1.22564 1.38137 0.86524 0.85553 0.78899 0.77437 1.21109 1.21808 1.20461 1.23282 0.98012 1.00669 0.95390 0.87189 0.91741 0.91875 0.83368 0.81518 0.88163 0.91909 0.91842 0.76550 0.88157 0.91381 0.88835 0.89669 0.95293 0.95593 0.80755 0.93127 0.88441 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.15 16 2 O -0.30 -3.32 10.03 -18.21 -0.18 -3.51 16 3 C 0.24 2.58 6.74 -38.32 -0.26 2.33 16 4 C -0.30 -2.28 9.09 -39.34 -0.36 -2.64 16 5 C 0.19 1.41 11.15 -17.57 -0.20 1.21 16 6 N -0.56 -5.57 9.20 -13.06 -0.12 -5.69 16 7 C 0.39 4.57 7.51 -16.63 -0.12 4.45 16 8 O -0.29 -3.39 9.93 -17.95 -0.18 -3.56 16 9 C 0.04 0.30 10.38 101.05 1.05 1.35 16 10 C -0.24 -3.06 5.67 -104.57 -0.59 -3.65 16 11 C 0.59 8.87 6.42 -12.60 -0.08 8.78 16 12 O -0.53 -9.79 16.73 5.26 0.09 -9.70 16 13 N -0.70 -9.08 5.26 -54.15 -0.28 -9.36 16 14 C 0.12 1.56 4.30 -67.11 -0.29 1.27 16 15 C -0.14 -2.09 7.45 -25.77 -0.19 -2.28 16 16 C -0.12 -1.81 3.65 -89.66 -0.33 -2.13 16 17 C 0.17 3.24 6.10 -4.04 -0.02 3.22 16 18 N -0.76 -18.32 5.41 -59.91 -0.32 -18.65 16 19 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 20 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 21 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 22 N -0.94 -29.84 13.97 55.49 0.78 -29.06 16 23 Si 0.89 22.40 27.74 -169.99 -4.71 17.68 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 27 C -0.13 -1.65 7.38 -25.92 -0.19 -1.84 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 30 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 31 H 0.15 0.68 6.45 -52.49 -0.34 0.34 16 32 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 36 H 0.40 4.52 8.69 -40.82 -0.35 4.17 16 37 H 0.10 1.42 7.50 -51.93 -0.39 1.03 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.03 0.57 7.85 -51.93 -0.41 0.16 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.36 8.54 5.53 -40.82 -0.23 8.31 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -37.48 387.54 -6.68 -44.16 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.74 Total: 7.81 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.84 Total: 4.03 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.05 Total: -62.77 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.27 Total: -16.77 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.48 -6.68 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505506597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.512 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds