Wall clock time and date at job start Tue Mar 31 2020 19:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35504 * 116.99589 * 2 1 4 4 C 1.39212 * 120.90343 * 0.02864 * 3 2 1 5 5 C 1.37900 * 119.39076 * 179.97438 * 4 3 2 6 6 N 1.32076 * 121.29258 * 359.97438 * 5 4 3 7 7 C 1.32184 * 121.97943 * 359.72292 * 6 5 4 8 8 O 1.35421 * 119.78421 * 180.29256 * 7 6 5 9 9 C 1.42906 * 116.99580 * 0.24610 * 8 7 6 10 10 C 1.40295 * 120.44062 * 0.53984 * 7 6 5 11 11 C 1.47234 * 120.65303 * 179.74983 * 10 7 6 12 12 O 1.21623 * 120.00192 * 269.72171 * 11 10 7 13 13 N 1.34777 * 119.99507 * 89.99406 * 11 10 7 14 14 C 1.46505 * 119.99724 * 179.72631 * 13 11 10 15 15 C 1.53791 * 113.61264 * 254.13682 * 14 13 11 16 16 C 1.54049 * 86.98640 * 270.83894 * 15 14 13 17 17 C 1.52997 * 113.62029 * 220.02291 * 16 15 14 18 18 N 1.46498 * 109.46927 * 272.49747 * 17 16 15 19 19 C 1.36939 * 119.99677 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99895 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00248 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47075 * 90.00152 * 23 21 19 25 25 H 1.48503 * 109.46850 * 209.99996 * 23 21 19 26 26 H 1.48498 * 109.47110 * 329.99835 * 23 21 19 27 27 C 1.53775 * 113.61431 * 156.53259 * 14 13 11 28 28 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47343 * 299.99936 * 1 2 3 30 30 H 1.09000 * 109.46989 * 60.00066 * 1 2 3 31 31 H 1.08002 * 120.30330 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.35650 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47276 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.46995 * 299.99765 * 9 8 7 35 35 H 1.08993 * 109.47094 * 59.99964 * 9 8 7 36 36 H 0.97000 * 120.00483 * 359.73063 * 13 11 10 37 37 H 1.08996 * 112.84787 * 25.33042 * 14 13 11 38 38 H 1.08997 * 113.60978 * 25.43765 * 15 14 13 39 39 H 1.09004 * 113.60588 * 156.33413 * 15 14 13 40 40 H 1.08998 * 113.68827 * 89.12900 * 16 15 14 41 41 H 1.09004 * 109.46774 * 32.49316 * 17 16 15 42 42 H 1.08993 * 109.47146 * 152.49224 * 17 16 15 43 43 H 0.96996 * 119.99990 * 359.97438 * 18 17 16 44 44 H 0.97003 * 120.00268 * 180.02562 * 22 21 19 45 45 H 1.09003 * 113.61665 * 203.66359 * 27 14 13 46 46 H 1.08998 * 113.61372 * 334.48462 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 0.0006 5 6 1.9625 3.5985 0.0011 6 7 3.2817 3.6626 0.0016 7 6 4.0354 2.5767 0.0070 8 8 5.3845 2.6943 0.0132 9 6 5.9202 4.0191 0.0190 10 6 3.4471 1.3031 0.0011 11 6 4.2822 0.0905 0.0015 12 8 4.6274 -0.4105 -1.0516 13 7 4.6593 -0.4675 1.1690 14 6 5.4853 -1.6775 1.1694 15 6 4.7121 -2.9509 1.5513 16 6 5.0779 -2.6364 3.0143 17 6 5.4521 -3.8740 3.8323 18 7 4.2409 -4.4624 4.4095 19 6 4.3291 -5.5868 5.1861 20 1 5.2915 -6.0396 5.3734 21 6 3.1816 -6.1440 5.7335 22 7 3.2663 -7.2244 6.4804 23 14 1.5170 -5.3603 5.4101 24 1 0.9208 -5.9522 4.1855 25 1 0.6199 -5.6086 6.5671 26 1 1.6871 -3.8973 5.2206 27 6 6.2930 -1.8715 2.4635 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2249 2.3528 0.0007 32 1 1.3880 4.5130 0.0020 33 1 7.0091 3.9708 0.0232 34 1 5.5840 4.5509 -0.8711 35 1 5.5761 4.5462 0.9088 36 1 4.3839 -0.0679 2.0089 37 1 6.0809 -1.7837 0.2628 38 1 3.6436 -2.8914 1.3444 39 1 5.1669 -3.8672 1.1748 40 1 4.3527 -1.9985 3.5196 41 1 5.9377 -4.6042 3.1848 42 1 6.1341 -3.5879 4.6328 43 1 3.3766 -4.0555 4.2416 44 1 2.4644 -7.6140 6.8626 45 1 7.1792 -2.4932 2.3361 46 1 6.5011 -0.9411 2.9919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505506597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:08 Heat of formation + Delta-G solvation = -59.852829 kcal Electronic energy + Delta-G solvation = -28962.716598 eV Core-core repulsion = 24853.667451 eV Total energy + Delta-G solvation = -4109.049147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26434 -41.01127 -40.28399 -39.32553 -38.38496 -36.49208 -34.53453 -33.38136 -32.71521 -31.82609 -28.94055 -28.90922 -27.80888 -26.65410 -25.98917 -24.71086 -23.59500 -22.99831 -22.22786 -20.51419 -20.06480 -19.48886 -18.93108 -18.65581 -17.67067 -17.45064 -17.02434 -16.69781 -16.66220 -16.22366 -16.11732 -15.98364 -15.69624 -15.37515 -15.05630 -14.89927 -14.73422 -14.43263 -14.31247 -13.96487 -13.83050 -13.50752 -13.36018 -13.01080 -12.82311 -12.73999 -12.66317 -12.51041 -12.19683 -12.16714 -11.88927 -11.76345 -11.46146 -11.43071 -11.20215 -10.91785 -10.73872 -10.12567 -10.09735 -9.74787 -9.28165 -8.03279 -5.36233 -0.19993 0.13823 1.35422 1.40222 1.41063 1.47392 1.57773 2.04934 2.39057 2.47866 2.54391 3.26801 3.27721 3.44614 3.50746 3.56188 3.74459 3.83542 3.88806 3.95007 4.09390 4.13640 4.26201 4.32988 4.38145 4.42991 4.50629 4.55098 4.69795 4.70166 4.75401 4.83826 4.84616 4.87462 4.89397 4.97089 5.08744 5.11121 5.23983 5.31302 5.62206 5.75952 6.01016 6.07204 6.21211 6.41070 6.68077 7.07898 7.09817 7.85122 8.04294 9.18550 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.002939 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.037130 B = 9525.374968 C =10803.302586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.225 3.775 4 C -0.288 4.288 5 C 0.195 3.805 6 N -0.568 5.568 7 C 0.379 3.621 8 O -0.318 6.318 9 C 0.036 3.964 10 C -0.272 4.272 11 C 0.593 3.407 12 O -0.576 6.576 13 N -0.688 5.688 14 C 0.122 3.878 15 C -0.142 4.142 16 C -0.113 4.113 17 C 0.164 3.836 18 N -0.758 5.758 19 C -0.235 4.235 20 H 0.055 0.945 21 C -0.067 4.067 22 N -0.985 5.985 23 Si 0.958 3.042 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.251 1.251 27 C -0.115 4.115 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.183 0.817 32 H 0.211 0.789 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.410 0.590 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.365 0.635 44 H 0.258 0.742 45 H 0.109 0.891 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 30.079 -15.541 34.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.170 3.830 4 C -0.309 4.309 5 C 0.041 3.959 6 N -0.296 5.296 7 C 0.199 3.801 8 O -0.224 6.224 9 C -0.058 4.058 10 C -0.279 4.279 11 C 0.379 3.621 12 O -0.455 6.455 13 N -0.337 5.337 14 C 0.016 3.984 15 C -0.181 4.181 16 C -0.132 4.132 17 C 0.038 3.962 18 N -0.404 5.404 19 C -0.366 4.366 20 H 0.073 0.927 21 C -0.258 4.258 22 N -0.636 5.636 23 Si 0.785 3.215 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.176 1.176 27 C -0.153 4.153 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.201 0.799 32 H 0.227 0.773 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.198 0.802 44 H 0.067 0.933 45 H 0.127 0.873 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.147 29.923 -16.181 34.163 hybrid contribution -1.646 -0.774 0.483 1.882 sum -4.793 29.149 -15.698 33.452 Atomic orbital electron populations 1.23586 0.74466 1.06142 1.03791 1.86074 1.25102 1.26202 1.86302 1.19119 0.89453 0.86410 0.88046 1.22377 1.03470 0.91075 1.13977 1.23089 0.87756 0.98997 0.86050 1.67547 1.09174 1.29335 1.23517 1.19416 0.84898 0.87539 0.88207 1.86215 1.15531 1.34145 1.86523 1.23183 0.99818 0.79643 1.03111 1.18941 0.92250 0.92861 1.23826 1.17766 0.78234 0.82547 0.83578 1.90750 1.57306 1.64612 1.32869 1.45564 1.52342 1.27546 1.08264 1.21839 0.92738 0.83935 0.99867 1.23497 1.00440 0.98160 0.96019 1.22779 0.99165 0.96559 0.94662 1.20798 0.88203 0.92746 0.94475 1.42732 1.05544 1.31276 1.60816 1.19081 0.94178 1.01823 1.21551 0.92653 1.25548 1.01809 0.98362 1.00112 1.69891 1.29194 1.24605 1.39921 0.85362 0.79720 0.79353 0.77087 1.20576 1.22000 1.17574 1.23210 0.97038 1.01163 0.93895 0.86979 0.89811 0.89984 0.79932 0.77284 0.86319 0.91768 0.91174 0.75416 0.88983 0.92546 0.89161 0.89128 0.95614 0.95531 0.80211 0.93320 0.87273 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.33 -6.99 10.03 -88.06 -0.88 -7.88 16 3 C 0.22 4.60 6.74 23.09 0.16 4.76 16 4 C -0.29 -3.45 9.09 22.42 0.20 -3.25 16 5 C 0.20 2.20 11.15 84.58 0.94 3.14 16 6 N -0.57 -10.09 9.20 -308.28 -2.84 -12.93 16 7 C 0.38 8.63 7.51 85.14 0.64 9.27 16 8 O -0.32 -7.19 9.93 -87.15 -0.87 -8.05 16 9 C 0.04 0.50 10.38 113.37 1.18 1.68 16 10 C -0.27 -6.87 5.67 -19.83 -0.11 -6.98 16 11 C 0.59 17.94 6.42 86.61 0.56 18.50 16 12 O -0.58 -22.07 16.73 -4.10 -0.07 -22.14 16 13 N -0.69 -17.53 5.26 -443.47 -2.33 -19.86 16 14 C 0.12 3.15 4.30 45.52 0.20 3.34 16 15 C -0.14 -4.14 7.45 31.22 0.23 -3.91 16 16 C -0.11 -3.24 3.65 -10.18 -0.04 -3.28 16 17 C 0.16 6.21 6.10 86.38 0.53 6.74 16 18 N -0.76 -36.18 5.41 -343.47 -1.86 -38.04 16 19 C -0.24 -13.77 10.47 84.03 0.88 -12.89 16 20 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 22 N -0.99 -64.19 13.97 21.65 0.30 -63.89 16 23 Si 0.96 46.00 27.74 68.60 1.90 47.90 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 27 C -0.11 -2.56 7.38 31.12 0.23 -2.33 16 28 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 0.55 7.71 -2.39 -0.02 0.53 16 30 H 0.08 0.54 7.71 -2.39 -0.02 0.52 16 31 H 0.18 0.81 6.45 -2.91 -0.02 0.79 16 32 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 35 H 0.07 0.85 8.11 -2.39 -0.02 0.83 16 36 H 0.41 8.78 8.69 -92.71 -0.81 7.97 16 37 H 0.09 2.60 7.50 -2.39 -0.02 2.58 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.09 2.67 7.90 -2.39 -0.02 2.65 16 40 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.03 1.01 7.85 -2.38 -0.02 0.99 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.36 16.61 5.53 -92.71 -0.51 16.10 16 44 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 45 H 0.11 2.24 8.10 -2.39 -0.02 2.22 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -84.33 387.54 0.17 -84.15 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.36 Total: 28.26 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 7.17 Total: 12.47 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -6.72 Total: -134.72 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.82 Total: -38.07 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.90 kcal Total: -84.33 0.17 -84.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505506597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.299 kcal (2) G-P(sol) polarization free energy of solvation -84.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds