Wall clock time and date at job start Tue Mar 31 2020 18:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35678 * 117.00059 * 2 1 4 4 C 1.38922 * 119.68216 * 179.97438 * 3 2 1 5 5 C 1.38382 * 119.10939 * 179.74405 * 4 3 2 6 6 C 1.38829 * 118.48414 * 0.53785 * 5 4 3 7 7 C 1.50697 * 120.35607 * 179.73447 * 6 5 4 8 8 O 1.42904 * 109.47345 * 269.72815 * 7 6 5 9 9 C 1.42892 * 114.00478 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47483 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99598 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00129 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99715 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46837 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.77756 * 56.27653 * 14 13 12 16 16 C 1.53754 * 113.55189 * 187.13473 * 14 13 12 17 17 C 1.53500 * 83.25824 * 140.98816 * 16 14 13 18 18 N 1.47062 * 87.98400 * 333.76085 * 17 16 14 19 19 C 1.36939 * 136.05895 * 207.07940 * 18 17 16 20 20 H 1.07999 * 119.99935 * 173.57653 * 19 18 17 21 21 C 1.38809 * 119.99781 * 353.85837 * 19 18 17 22 22 N 1.31621 * 120.00248 * 4.74301 * 21 19 18 23 23 Si 1.86802 * 120.00012 * 184.74731 * 21 19 18 24 24 H 1.48499 * 109.47061 * 94.98271 * 23 21 19 25 25 H 1.48493 * 109.47356 * 214.98538 * 23 21 19 26 26 H 1.48505 * 109.47145 * 334.98749 * 23 21 19 27 27 C 1.38048 * 119.28983 * 359.46289 * 6 5 4 28 28 N 1.31965 * 120.83185 * 0.27262 * 27 6 5 29 29 H 1.09005 * 109.47360 * 60.00134 * 1 2 3 30 30 H 1.09001 * 109.47691 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47385 * 300.00234 * 1 2 3 32 32 H 1.08004 * 120.44652 * 0.04882 * 4 3 2 33 33 H 1.08002 * 120.75827 * 180.29795 * 5 4 3 34 34 H 1.08997 * 109.47325 * 149.72772 * 7 6 5 35 35 H 1.09002 * 109.47104 * 29.72325 * 7 6 5 36 36 H 1.09003 * 109.47482 * 59.99438 * 9 8 7 37 37 H 1.09006 * 109.46878 * 299.99474 * 9 8 7 38 38 H 0.96997 * 119.99750 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46869 * 60.00305 * 13 12 10 40 40 H 1.08996 * 109.47033 * 299.99834 * 13 12 10 41 41 H 1.08996 * 114.39477 * 27.42354 * 16 14 13 42 42 H 1.09006 * 114.26661 * 254.53798 * 16 14 13 43 43 H 1.09003 * 113.46695 * 218.98561 * 17 16 14 44 44 H 1.08997 * 113.52282 * 88.55388 * 17 16 14 45 45 H 0.96999 * 120.00086 * 180.02562 * 22 21 19 46 46 H 1.07998 * 119.58424 * 180.29206 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 -0.0049 6 6 3.2505 3.6491 0.0008 7 6 3.8768 5.0198 0.0013 8 8 4.0744 5.4528 1.3487 9 6 4.6659 6.7486 1.4621 10 6 4.8264 7.1020 2.9182 11 8 4.4690 6.3212 3.7746 12 7 5.3671 8.2857 3.2688 13 6 5.5226 8.6294 4.6844 14 6 6.1572 10.0163 4.8057 15 1 5.5911 10.7867 4.2819 16 6 6.5236 10.4003 6.2487 17 6 7.7633 11.0099 5.5797 18 7 7.5945 10.0321 4.4944 19 6 8.4139 9.4132 3.5884 20 1 8.0222 8.6364 2.9485 21 6 9.7494 9.7803 3.4966 22 7 10.2510 10.6555 4.3420 23 14 10.8349 9.0322 2.1731 24 1 10.8724 9.9351 0.9948 25 1 12.2102 8.8531 2.7036 26 1 10.2847 7.7134 1.7687 27 6 1.8771 3.5097 0.0003 28 7 1.3186 2.3140 -0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0229 0.3694 0.0002 33 1 5.1254 2.5946 -0.0094 34 1 3.2186 5.7202 -0.5126 35 1 4.8375 4.9804 -0.5122 36 1 4.0236 7.4848 0.9785 37 1 5.6429 6.7455 0.9787 38 1 5.6533 8.9100 2.5838 39 1 6.1641 7.8932 5.1686 40 1 4.5452 8.6332 5.1668 41 1 6.7382 9.5526 6.8994 42 1 5.8545 11.1322 6.7012 43 1 8.6797 10.8683 6.1528 44 1 7.6218 12.0422 5.2599 45 1 11.1842 10.9123 4.2776 46 1 1.2518 4.3902 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569362783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:09 Heat of formation + Delta-G solvation = -17.346435 kcal Electronic energy + Delta-G solvation = -27637.894208 eV Core-core repulsion = 23530.688276 eV Total energy + Delta-G solvation = -4107.205932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94651 -39.56833 -38.56982 -38.12445 -37.22597 -34.04638 -33.04377 -32.27059 -31.88633 -29.24873 -28.04158 -27.87382 -26.71581 -25.52897 -23.77461 -23.51113 -22.23215 -21.97939 -20.33210 -19.27325 -18.72332 -17.51460 -17.39813 -16.95326 -16.52218 -16.28596 -16.16247 -15.60331 -15.24267 -15.20152 -14.84093 -14.66749 -14.23345 -14.13682 -13.75366 -13.66197 -13.45826 -13.23289 -13.07764 -12.58738 -12.31735 -12.20774 -11.84815 -11.71462 -11.57677 -11.42695 -11.13054 -11.01533 -10.82824 -10.59690 -10.20295 -10.03808 -10.02494 -9.88904 -9.81737 -9.60786 -9.21011 -8.86708 -8.77117 -8.59299 -6.93557 -5.83271 -3.15173 0.78572 0.94411 2.76047 2.88638 2.97125 3.33095 3.37717 3.41167 3.50085 3.98335 4.10118 4.38453 4.53938 4.58036 4.67325 4.81502 4.92210 4.98293 4.99787 5.06485 5.10448 5.14050 5.17627 5.23199 5.30118 5.35834 5.43991 5.52807 5.59993 5.69865 5.88539 5.96272 6.07987 6.09344 6.29152 6.37532 6.56747 6.68959 6.79061 6.88718 6.92798 7.19534 7.34563 7.51675 7.53525 7.85977 7.91814 8.53893 8.97298 9.64731 10.58765 11.34398 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.002046 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.628333 B =13681.561061 C =14828.801803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.322 3.678 4 C -0.192 4.192 5 C -0.017 4.017 6 C -0.177 4.177 7 C 0.110 3.890 8 O -0.357 6.357 9 C 0.043 3.957 10 C 0.510 3.490 11 O -0.531 6.531 12 N -0.712 5.712 13 C 0.124 3.876 14 C 0.127 3.873 15 H 0.049 0.951 16 C -0.161 4.161 17 C 0.154 3.846 18 N -0.601 5.601 19 C -0.216 4.216 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.915 5.915 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.164 3.836 28 N -0.543 5.543 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.404 0.596 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.254 0.746 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 -12.222 -10.518 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.144 3.856 4 C -0.213 4.213 5 C -0.043 4.043 6 C -0.179 4.179 7 C 0.033 3.967 8 O -0.276 6.276 9 C -0.037 4.037 10 C 0.295 3.705 11 O -0.408 6.408 12 N -0.365 5.365 13 C 0.000 4.000 14 C 0.019 3.981 15 H 0.066 0.934 16 C -0.201 4.201 17 C 0.028 3.972 18 N -0.327 5.327 19 C -0.343 4.343 20 H 0.099 0.901 21 C -0.204 4.204 22 N -0.562 5.562 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.008 3.992 28 N -0.266 5.266 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.639 -13.353 -9.900 24.237 hybrid contribution 1.586 0.427 -1.366 2.136 sum -16.053 -12.927 -11.266 23.488 Atomic orbital electron populations 1.22870 0.77128 1.02960 1.02575 1.86238 1.23039 1.24591 1.87700 1.19904 0.89486 0.84727 0.91517 1.21071 0.91993 0.99595 1.08611 1.21382 1.00805 0.90628 0.91454 1.20391 0.94816 0.95322 1.07383 1.21172 0.99468 0.91620 0.84486 1.88097 1.82238 1.32232 1.25007 1.22254 0.99452 0.86447 0.95554 1.20110 0.78271 0.82011 0.90152 1.90705 1.49167 1.49110 1.51770 1.45852 1.62444 1.18390 1.09781 1.21801 0.99664 0.98113 0.80459 1.22474 0.88252 0.93034 0.94355 0.93398 1.23719 1.00087 1.00854 0.95391 1.21978 0.95381 0.91803 0.88051 1.45686 1.00289 1.47982 1.38774 1.18849 0.89866 1.13512 1.12111 0.90142 1.24829 0.97057 0.99202 0.99295 1.69846 1.13546 1.35634 1.37134 0.86178 0.80323 0.78349 0.81410 1.21641 1.21687 1.20597 1.22313 0.92091 0.93672 0.91153 1.67351 1.40768 0.98727 1.19728 0.92274 0.88608 0.92169 0.83859 0.83756 0.91893 0.91864 0.90309 0.89980 0.76195 0.91103 0.92208 0.90192 0.92319 0.91365 0.95555 0.93639 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.23 10.48 -18.74 -0.20 -3.42 16 3 C 0.32 3.64 7.49 -17.12 -0.13 3.51 16 4 C -0.19 -1.91 10.04 -39.28 -0.39 -2.30 16 5 C -0.02 -0.17 9.85 -39.31 -0.39 -0.55 16 6 C -0.18 -1.80 5.53 -104.47 -0.58 -2.38 16 7 C 0.11 1.03 6.09 36.00 0.22 1.25 16 8 O -0.36 -4.87 9.86 -55.14 -0.54 -5.41 16 9 C 0.04 0.53 6.42 36.01 0.23 0.76 16 10 C 0.51 8.52 7.91 -10.98 -0.09 8.43 16 11 O -0.53 -11.16 16.50 -14.35 -0.24 -11.40 16 12 N -0.71 -11.59 5.33 -60.30 -0.32 -11.91 16 13 C 0.12 2.20 5.53 -4.04 -0.02 2.18 16 14 C 0.13 2.36 4.11 -72.26 -0.30 2.06 16 15 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.16 -2.87 8.04 -26.08 -0.21 -3.08 16 17 C 0.15 3.44 7.31 -8.51 -0.06 3.38 16 18 N -0.60 -14.25 3.65 -176.84 -0.64 -14.90 16 19 C -0.22 -5.62 10.55 -15.06 -0.16 -5.78 16 20 H 0.08 2.00 7.61 -52.49 -0.40 1.60 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -26.39 11.62 55.49 0.64 -25.75 16 23 Si 0.91 21.34 29.56 -169.99 -5.02 16.31 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.16 1.69 10.85 -17.56 -0.19 1.50 16 28 N -0.54 -6.24 9.22 -13.33 -0.12 -6.36 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 6.01 8.47 -40.82 -0.35 5.67 16 39 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.71 7.31 -51.93 -0.38 1.33 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -34.95 394.64 -8.62 -43.57 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.01 Total: 3.29 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.11 Total: 10.02 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.44 Total: -58.92 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.98 Total: -20.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.95 -8.62 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569362783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.226 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds