Wall clock time and date at job start Tue Mar 31 2020 18:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35678 * 117.00059 * 2 1 4 4 C 1.38922 * 119.68216 * 179.97438 * 3 2 1 5 5 C 1.38382 * 119.10939 * 179.74405 * 4 3 2 6 6 C 1.38829 * 118.48414 * 0.53785 * 5 4 3 7 7 C 1.50697 * 120.35607 * 179.73447 * 6 5 4 8 8 O 1.42904 * 109.47345 * 269.72815 * 7 6 5 9 9 C 1.42892 * 114.00478 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47483 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99598 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00129 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99715 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46837 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.77756 * 56.27653 * 14 13 12 16 16 C 1.53754 * 113.55189 * 187.13473 * 14 13 12 17 17 C 1.53500 * 83.25824 * 140.98816 * 16 14 13 18 18 N 1.47062 * 87.98400 * 333.76085 * 17 16 14 19 19 C 1.36939 * 136.05895 * 207.07940 * 18 17 16 20 20 H 1.07999 * 119.99935 * 173.57653 * 19 18 17 21 21 C 1.38809 * 119.99781 * 353.85837 * 19 18 17 22 22 N 1.31621 * 120.00248 * 4.74301 * 21 19 18 23 23 Si 1.86802 * 120.00012 * 184.74731 * 21 19 18 24 24 H 1.48499 * 109.47061 * 94.98271 * 23 21 19 25 25 H 1.48493 * 109.47356 * 214.98538 * 23 21 19 26 26 H 1.48505 * 109.47145 * 334.98749 * 23 21 19 27 27 C 1.38048 * 119.28983 * 359.46289 * 6 5 4 28 28 N 1.31965 * 120.83185 * 0.27262 * 27 6 5 29 29 H 1.09005 * 109.47360 * 60.00134 * 1 2 3 30 30 H 1.09001 * 109.47691 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47385 * 300.00234 * 1 2 3 32 32 H 1.08004 * 120.44652 * 0.04882 * 4 3 2 33 33 H 1.08002 * 120.75827 * 180.29795 * 5 4 3 34 34 H 1.08997 * 109.47325 * 149.72772 * 7 6 5 35 35 H 1.09002 * 109.47104 * 29.72325 * 7 6 5 36 36 H 1.09003 * 109.47482 * 59.99438 * 9 8 7 37 37 H 1.09006 * 109.46878 * 299.99474 * 9 8 7 38 38 H 0.96997 * 119.99750 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46869 * 60.00305 * 13 12 10 40 40 H 1.08996 * 109.47033 * 299.99834 * 13 12 10 41 41 H 1.08996 * 114.39477 * 27.42354 * 16 14 13 42 42 H 1.09006 * 114.26661 * 254.53798 * 16 14 13 43 43 H 1.09003 * 113.46695 * 218.98561 * 17 16 14 44 44 H 1.08997 * 113.52282 * 88.55388 * 17 16 14 45 45 H 0.96999 * 120.00086 * 180.02562 * 22 21 19 46 46 H 1.07998 * 119.58424 * 180.29206 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 -0.0049 6 6 3.2505 3.6491 0.0008 7 6 3.8768 5.0198 0.0013 8 8 4.0744 5.4528 1.3487 9 6 4.6659 6.7486 1.4621 10 6 4.8264 7.1020 2.9182 11 8 4.4690 6.3212 3.7746 12 7 5.3671 8.2857 3.2688 13 6 5.5226 8.6294 4.6844 14 6 6.1572 10.0163 4.8057 15 1 5.5911 10.7867 4.2819 16 6 6.5236 10.4003 6.2487 17 6 7.7633 11.0099 5.5797 18 7 7.5945 10.0321 4.4944 19 6 8.4139 9.4132 3.5884 20 1 8.0222 8.6364 2.9485 21 6 9.7494 9.7803 3.4966 22 7 10.2510 10.6555 4.3420 23 14 10.8349 9.0322 2.1731 24 1 10.8724 9.9351 0.9948 25 1 12.2102 8.8531 2.7036 26 1 10.2847 7.7134 1.7687 27 6 1.8771 3.5097 0.0003 28 7 1.3186 2.3140 -0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0229 0.3694 0.0002 33 1 5.1254 2.5946 -0.0094 34 1 3.2186 5.7202 -0.5126 35 1 4.8375 4.9804 -0.5122 36 1 4.0236 7.4848 0.9785 37 1 5.6429 6.7455 0.9787 38 1 5.6533 8.9100 2.5838 39 1 6.1641 7.8932 5.1686 40 1 4.5452 8.6332 5.1668 41 1 6.7382 9.5526 6.8994 42 1 5.8545 11.1322 6.7012 43 1 8.6797 10.8683 6.1528 44 1 7.6218 12.0422 5.2599 45 1 11.1842 10.9123 4.2776 46 1 1.2518 4.3902 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569362783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:08 Heat of formation + Delta-G solvation = -43.073156 kcal Electronic energy + Delta-G solvation = -27639.009802 eV Core-core repulsion = 23530.688276 eV Total energy + Delta-G solvation = -4108.321526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68315 -40.86935 -39.80273 -39.21670 -38.18024 -35.47728 -34.22085 -33.80210 -32.63176 -30.47445 -29.84821 -28.65944 -27.79855 -26.37248 -25.36855 -24.48903 -23.51666 -22.97022 -21.65747 -20.93950 -19.44489 -18.84557 -18.24900 -18.06191 -17.88709 -17.25389 -17.02642 -16.87767 -16.55959 -16.43964 -15.87782 -15.58543 -15.55108 -15.31167 -15.17648 -14.69473 -14.57293 -14.37928 -14.12510 -13.65648 -13.51418 -13.38188 -13.00577 -12.91828 -12.82424 -12.65985 -12.55888 -12.44627 -12.29089 -12.13372 -11.83994 -11.62038 -11.18545 -10.95772 -10.82677 -10.81775 -10.69799 -10.58754 -9.99840 -9.52539 -8.85764 -7.86026 -5.17165 0.02423 0.20570 1.47070 1.48487 1.56553 1.63409 1.91958 2.09895 2.49330 2.64555 3.18012 3.30177 3.36460 3.48099 3.75857 3.88858 3.91611 3.96943 3.97306 4.16368 4.18587 4.27554 4.32427 4.38070 4.40078 4.42380 4.51146 4.52615 4.66497 4.71594 4.72583 4.76103 4.89170 4.90281 5.07574 5.12710 5.24857 5.36084 5.40401 5.47395 5.60816 5.75479 5.98228 6.05948 6.16857 6.61807 6.75710 6.95546 7.28039 7.66740 8.67132 9.32347 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.002046 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.628333 B =13681.561061 C =14828.801803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.303 3.697 4 C -0.200 4.200 5 C -0.023 4.023 6 C -0.186 4.186 7 C 0.108 3.892 8 O -0.392 6.392 9 C 0.049 3.951 10 C 0.505 3.495 11 O -0.582 6.582 12 N -0.708 5.708 13 C 0.132 3.868 14 C 0.135 3.865 15 H 0.073 0.927 16 C -0.137 4.137 17 C 0.145 3.855 18 N -0.629 5.629 19 C -0.207 4.207 20 H 0.091 0.909 21 C -0.074 4.074 22 N -0.954 5.954 23 Si 0.969 3.031 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.266 1.266 27 C 0.152 3.848 28 N -0.559 5.559 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.052 0.948 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.412 0.588 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.244 0.756 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.281 -12.319 -12.134 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.125 3.875 4 C -0.220 4.220 5 C -0.048 4.048 6 C -0.188 4.188 7 C 0.032 3.968 8 O -0.311 6.311 9 C -0.030 4.030 10 C 0.292 3.708 11 O -0.462 6.462 12 N -0.360 5.360 13 C 0.007 3.993 14 C 0.029 3.971 15 H 0.090 0.910 16 C -0.176 4.176 17 C 0.019 3.981 18 N -0.355 5.355 19 C -0.335 4.335 20 H 0.109 0.891 21 C -0.267 4.267 22 N -0.603 5.603 23 Si 0.799 3.201 24 H -0.212 1.212 25 H -0.232 1.232 26 H -0.191 1.191 27 C -0.003 4.003 28 N -0.283 5.283 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.248 0.752 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.113 -13.447 -11.549 26.068 hybrid contribution 1.932 0.436 -0.823 2.145 sum -17.182 -13.011 -12.372 24.851 Atomic orbital electron populations 1.23053 0.75864 1.04676 1.02194 1.86221 1.24401 1.24463 1.87720 1.20214 0.90213 0.84978 0.92139 1.21335 0.91804 1.00530 1.08328 1.21696 1.01821 0.90454 0.90822 1.20619 0.94885 0.96129 1.07197 1.21387 1.01008 0.91456 0.82963 1.88046 1.82605 1.32863 1.27622 1.22285 1.01415 0.87119 0.92160 1.20966 0.76823 0.81103 0.91935 1.90682 1.51308 1.50494 1.53672 1.45819 1.62147 1.18771 1.09310 1.21564 0.99699 0.96475 0.81558 1.22602 0.85795 0.94013 0.94726 0.90983 1.23550 0.97880 1.01060 0.95079 1.21989 0.95948 0.91867 0.88297 1.46001 1.02817 1.48026 1.38663 1.19242 0.90156 1.12872 1.11211 0.89128 1.25619 0.98768 1.00631 1.01654 1.70036 1.13166 1.37933 1.39205 0.85181 0.77830 0.78195 0.78938 1.21238 1.23179 1.19062 1.22701 0.92757 0.93917 0.90953 1.67352 1.41368 0.99226 1.20354 0.92265 0.85885 0.92894 0.82362 0.81961 0.89235 0.90053 0.86471 0.88036 0.75187 0.94301 0.90473 0.90420 0.88271 0.95122 0.95822 0.94668 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 113.37 1.18 1.71 16 2 O -0.32 -6.61 10.48 -89.96 -0.94 -7.55 16 3 C 0.30 6.75 7.49 84.80 0.63 7.38 16 4 C -0.20 -3.82 10.04 22.47 0.23 -3.59 16 5 C -0.02 -0.41 9.85 22.45 0.22 -0.19 16 6 C -0.19 -3.47 5.53 -19.77 -0.11 -3.58 16 7 C 0.11 1.69 6.09 71.23 0.43 2.13 16 8 O -0.39 -9.70 9.86 -129.94 -1.28 -10.98 16 9 C 0.05 1.05 6.42 71.24 0.46 1.50 16 10 C 0.50 15.87 7.91 87.66 0.69 16.56 16 11 O -0.58 -24.07 16.50 16.01 0.26 -23.80 16 12 N -0.71 -21.42 5.33 -463.06 -2.47 -23.89 16 13 C 0.13 4.45 5.53 86.38 0.48 4.92 16 14 C 0.13 4.72 4.11 41.88 0.17 4.89 16 15 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 16 C -0.14 -4.58 8.04 31.02 0.25 -4.34 16 17 C 0.14 6.47 7.31 83.18 0.61 7.08 16 18 N -0.63 -29.36 3.65 -713.39 -2.60 -31.96 16 19 C -0.21 -10.62 10.55 84.03 0.89 -9.73 16 20 H 0.09 4.35 7.61 -2.91 -0.02 4.33 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 22 N -0.95 -56.44 11.62 21.65 0.25 -56.19 16 23 Si 0.97 44.02 29.56 68.60 2.03 46.04 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.15 2.97 10.85 84.63 0.92 3.89 16 28 N -0.56 -12.63 9.22 -308.95 -2.85 -15.48 16 29 H 0.06 0.83 8.10 -2.38 -0.02 0.81 16 30 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.82 8.10 -2.39 -0.02 0.81 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.41 11.06 8.47 -92.71 -0.79 10.28 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.08 2.65 8.13 -2.39 -0.02 2.63 16 42 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 43 H 0.03 1.58 7.31 -2.39 -0.02 1.56 16 44 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -78.19 394.64 0.12 -78.07 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.20 Total: 20.68 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 7.51 Total: 25.06 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -7.67 Total: -127.52 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.96 Total: -42.34 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.19 0.12 -78.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569362783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.996 kcal (2) G-P(sol) polarization free energy of solvation -78.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds