Wall clock time and date at job start Tue Mar 31 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34672 * 119.70269 * 2 1 4 4 O 1.21963 * 119.95861 * 0.02562 * 3 2 1 5 5 C 1.41238 * 120.08495 * 180.27552 * 3 2 1 6 6 C 1.36116 * 119.50502 * 359.42135 * 5 3 2 7 7 C 1.40394 * 119.42097 * 0.59424 * 6 5 3 8 8 C 1.36301 * 119.90243 * 359.69562 * 7 6 5 9 9 C 1.47889 * 119.75506 * 179.97438 * 8 7 6 10 10 O 1.21542 * 119.99835 * 179.97438 * 9 8 7 11 11 N 1.34773 * 119.99808 * 359.97438 * 9 8 7 12 12 C 1.46507 * 119.99849 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47310 * 176.57078 * 12 11 9 14 14 N 1.46507 * 109.53790 * 54.54575 * 13 12 11 15 15 C 1.36933 * 120.00068 * 62.02771 * 14 13 12 16 16 H 1.08000 * 119.99678 * 354.00114 * 15 14 13 17 17 C 1.38814 * 120.00269 * 174.00864 * 15 14 13 18 18 N 1.31624 * 119.99756 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00211 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47079 * 89.99940 * 19 17 15 21 21 H 1.48504 * 109.47212 * 210.00204 * 19 17 15 22 22 H 1.48497 * 109.47276 * 329.99890 * 19 17 15 23 23 C 1.53177 * 109.54497 * 294.37167 * 13 12 11 24 24 C 1.53099 * 109.15731 * 183.23771 * 23 13 12 25 25 O 1.42908 * 109.48357 * 57.47665 * 24 23 13 26 26 C 1.42906 * 114.09664 * 298.88197 * 25 24 23 27 27 C 1.53094 * 109.41050 * 61.16198 * 26 25 24 28 28 H 1.09008 * 109.46774 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47096 * 120.00026 * 1 2 3 30 30 H 1.09000 * 109.47261 * 240.00406 * 1 2 3 31 31 H 1.07997 * 120.24600 * 179.72227 * 5 3 2 32 32 H 1.08002 * 120.28628 * 180.27246 * 6 5 3 33 33 H 1.07997 * 120.04948 * 179.71275 * 7 6 5 34 34 H 0.96994 * 120.00462 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.47464 * 296.57516 * 12 11 9 36 36 H 1.08999 * 109.46572 * 56.57257 * 12 11 9 37 37 H 0.97001 * 119.99805 * 242.02070 * 14 13 12 38 38 H 0.96997 * 119.99804 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.51889 * 303.05865 * 23 13 12 40 40 H 1.08998 * 109.52415 * 63.24014 * 23 13 12 41 41 H 1.08991 * 109.40924 * 297.49243 * 24 23 13 42 42 H 1.09004 * 109.49181 * 177.50745 * 24 23 13 43 43 H 1.08997 * 109.47956 * 301.18314 * 26 25 24 44 44 H 1.08991 * 109.49126 * 181.15117 * 26 25 24 45 45 H 1.08999 * 109.51997 * 182.48503 * 27 26 25 46 46 H 1.09005 * 109.57264 * 62.32914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1324 1.1698 0.0000 4 8 1.5163 2.2224 0.0005 5 6 3.5447 1.1792 -0.0059 6 6 4.2230 -0.0009 0.0004 7 6 3.5065 -1.2082 0.0000 8 6 2.1436 -1.1895 -0.0004 9 6 1.3921 -2.4632 -0.0014 10 8 0.1767 -2.4517 -0.0013 11 7 2.0549 -3.6367 -0.0024 12 6 1.3104 -4.8985 -0.0029 13 6 2.2913 -6.0694 -0.0903 14 7 3.2771 -5.9644 0.9884 15 6 2.8706 -6.0168 2.2949 16 1 1.8172 -6.0378 2.5322 17 6 3.8123 -6.0426 3.3144 18 7 5.0961 -6.0173 3.0251 19 14 3.2577 -6.1134 5.0967 20 1 3.1270 -7.5312 5.5185 21 1 4.2604 -5.4321 5.9545 22 1 1.9450 -5.4330 5.2340 23 6 3.0076 -6.0379 -1.4439 24 6 3.9264 -7.2574 -1.5547 25 8 3.1566 -8.4505 -1.3926 26 6 2.5038 -8.5560 -0.1258 27 6 1.5262 -7.3898 0.0415 28 1 -0.3633 1.0278 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3634 -0.5138 0.8900 31 1 4.0824 2.1158 -0.0104 32 1 5.3030 -0.0084 0.0005 33 1 4.0343 -2.1504 0.0003 34 1 3.0248 -3.6459 -0.0021 35 1 0.7302 -4.9784 0.9164 36 1 0.6378 -4.9231 -0.8603 37 1 4.2178 -5.8578 0.7770 38 1 5.7542 -6.0357 3.7375 39 1 2.2706 -6.0644 -2.2467 40 1 3.5995 -5.1259 -1.5217 41 1 4.6888 -7.2083 -0.7773 42 1 4.4055 -7.2642 -2.5338 43 1 3.2476 -8.5238 0.6703 44 1 1.9579 -9.4980 -0.0753 45 1 1.0597 -7.4438 1.0251 46 1 0.7576 -7.4440 -0.7296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569732875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:46 Heat of formation + Delta-G solvation = -80.082345 kcal Electronic energy + Delta-G solvation = -30267.965785 eV Core-core repulsion = 26158.039420 eV Total energy + Delta-G solvation = -4109.926365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64425 -41.03255 -40.14492 -37.91017 -37.36297 -35.86203 -34.98325 -33.94473 -31.94333 -31.50321 -30.89797 -28.69791 -28.19635 -26.00281 -25.71170 -24.38422 -23.80532 -23.30999 -21.88753 -20.20615 -19.33472 -18.93022 -18.49774 -18.00061 -17.43468 -17.15216 -16.89248 -16.80278 -16.65887 -16.18096 -16.10162 -15.73402 -15.59019 -15.36392 -15.32162 -14.74935 -14.29327 -14.16139 -13.78037 -13.69298 -13.59285 -13.47612 -13.16015 -13.12595 -12.92573 -12.84915 -12.80977 -12.65544 -12.20992 -12.06188 -11.73323 -11.45373 -11.36016 -11.16084 -11.10051 -10.99578 -10.86365 -10.29200 -10.07228 -9.16993 -8.95299 -7.89200 -5.14784 -0.64424 0.57551 1.33650 1.45961 1.51494 1.53833 1.72126 2.09426 2.57632 2.57889 3.12263 3.35322 3.45182 3.53906 3.78487 3.84590 3.89207 3.99300 4.12302 4.17240 4.22789 4.28148 4.36366 4.41713 4.52754 4.63173 4.69900 4.76811 4.80643 4.84679 4.86131 4.93604 4.95570 5.07048 5.12735 5.15941 5.23241 5.31043 5.34149 5.38475 5.43406 5.65747 5.86178 6.33003 6.41627 6.42031 6.80042 6.99972 7.43807 8.11192 8.38750 9.32452 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003998 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.339829 B = 7002.188490 C = 8127.465554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.481 5.481 3 C 0.497 3.503 4 O -0.598 6.598 5 C -0.227 4.227 6 C -0.006 4.006 7 C -0.159 4.159 8 C 0.097 3.903 9 C 0.549 3.451 10 O -0.562 6.562 11 N -0.673 5.673 12 C 0.124 3.876 13 C 0.187 3.813 14 N -0.711 5.711 15 C -0.212 4.212 16 H 0.066 0.934 17 C -0.053 4.053 18 N -0.954 5.954 19 Si 0.941 3.059 20 H -0.295 1.295 21 H -0.302 1.302 22 H -0.283 1.283 23 C -0.144 4.144 24 C 0.063 3.937 25 O -0.399 6.399 26 C 0.075 3.925 27 C -0.150 4.150 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.171 0.829 32 H 0.187 0.813 33 H 0.171 0.829 34 H 0.412 0.588 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.380 0.620 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.111 0.889 43 H 0.035 0.965 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 4.172 -11.171 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.192 5.192 3 C 0.301 3.699 4 O -0.485 6.485 5 C -0.249 4.249 6 C -0.027 4.027 7 C -0.183 4.183 8 C -0.013 4.013 9 C 0.334 3.666 10 O -0.443 6.443 11 N -0.324 5.324 12 C -0.001 4.001 13 C 0.096 3.904 14 N -0.353 5.353 15 C -0.345 4.345 16 H 0.084 0.916 17 C -0.246 4.246 18 N -0.604 5.604 19 Si 0.773 3.227 20 H -0.222 1.222 21 H -0.229 1.229 22 H -0.209 1.209 23 C -0.182 4.182 24 C -0.014 4.014 25 O -0.318 6.318 26 C -0.002 4.002 27 C -0.190 4.190 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.189 0.811 32 H 0.205 0.795 33 H 0.188 0.812 34 H 0.251 0.749 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.214 0.786 38 H 0.057 0.943 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.129 0.871 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.985 4.622 -11.155 12.237 hybrid contribution 0.312 0.080 1.883 1.910 sum -1.673 4.701 -9.272 10.529 Atomic orbital electron populations 1.22190 0.76353 1.03777 1.04638 1.45408 1.10074 1.05485 1.58265 1.17911 0.90640 0.82039 0.79352 1.90886 1.70925 1.30384 1.56263 1.22551 0.90924 1.02061 1.09365 1.21848 1.03100 0.89742 0.87977 1.21407 0.90336 1.01976 1.04622 1.20203 0.93227 0.85938 1.01903 1.17984 0.86898 0.83882 0.77838 1.90783 1.14107 1.87599 1.51764 1.45543 1.11423 1.04308 1.71128 1.21829 0.94617 0.82772 1.00922 1.20029 0.89693 0.91801 0.88906 1.42510 1.05389 1.86829 1.00543 1.19156 0.91640 1.39785 0.83874 0.91617 1.25082 0.95502 1.04361 0.99686 1.69713 0.99642 1.59570 1.31479 0.85644 0.76696 0.76950 0.83378 1.22238 1.22914 1.20884 1.22336 1.00283 0.99485 0.96072 1.22600 0.92778 0.83930 1.02076 1.87808 1.66458 1.41679 1.35893 1.22355 0.94650 0.98227 0.84957 1.22415 0.98621 0.95857 1.02088 0.89431 0.89390 0.90347 0.81112 0.79547 0.81153 0.74869 0.93676 0.90536 0.78608 0.94309 0.89249 0.89503 0.94307 0.87145 0.94614 0.88662 0.91996 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 8.93 127.77 1.14 3.14 16 2 N -0.48 -13.73 3.02 -660.58 -1.99 -15.72 16 3 C 0.50 14.74 7.43 84.99 0.63 15.37 16 4 O -0.60 -21.79 16.39 -5.20 -0.09 -21.88 16 5 C -0.23 -4.82 10.00 22.51 0.23 -4.60 16 6 C -0.01 -0.09 10.08 22.30 0.22 0.14 16 7 C -0.16 -3.12 9.51 22.34 0.21 -2.91 16 8 C 0.10 2.51 6.63 40.45 0.27 2.78 16 9 C 0.55 15.90 7.72 86.80 0.67 16.57 16 10 O -0.56 -18.96 13.17 -3.85 -0.05 -19.01 16 11 N -0.67 -18.15 5.07 -465.93 -2.36 -20.52 16 12 C 0.12 3.60 4.36 86.38 0.38 3.98 16 13 C 0.19 5.42 0.41 3.72 0.00 5.42 16 14 N -0.71 -26.50 3.60 -302.81 -1.09 -27.59 16 15 C -0.21 -9.59 8.67 84.03 0.73 -8.86 16 16 H 0.07 3.03 6.78 -2.91 -0.02 3.01 16 17 C -0.05 -2.62 5.50 84.86 0.47 -2.15 16 18 N -0.95 -50.05 13.07 21.65 0.28 -49.76 16 19 Si 0.94 42.58 29.55 68.60 2.03 44.61 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 C -0.14 -3.33 4.80 30.69 0.15 -3.18 16 24 C 0.06 1.61 6.67 72.02 0.48 2.09 16 25 O -0.40 -11.93 10.77 -148.98 -1.60 -13.53 16 26 C 0.07 2.30 6.68 72.01 0.48 2.78 16 27 C -0.15 -4.39 4.79 30.68 0.15 -4.24 16 28 H 0.09 2.45 6.86 -2.38 -0.02 2.43 16 29 H 0.09 2.37 7.22 -2.39 -0.02 2.35 16 30 H 0.08 2.29 7.22 -2.39 -0.02 2.27 16 31 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.17 2.74 6.29 -2.91 -0.02 2.72 16 34 H 0.41 10.14 5.40 -92.71 -0.50 9.64 16 35 H 0.04 1.56 7.47 -2.39 -0.02 1.54 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.38 15.25 6.82 -92.71 -0.63 14.62 16 38 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 39 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.09 1.73 7.40 -2.39 -0.02 1.71 16 41 H 0.04 1.18 7.15 -2.39 -0.02 1.16 16 42 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.04 1.34 7.75 -2.39 -0.02 1.32 16 44 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.06 2.02 7.20 -2.39 -0.02 2.00 16 46 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -64.39 366.84 1.22 -63.17 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.10 Total: 33.90 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 6.20 Total: 26.33 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -5.17 Total: -113.59 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -1.74 Total: -54.42 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -64.39 1.22 -63.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569732875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.912 kcal (2) G-P(sol) polarization free energy of solvation -64.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds