Wall clock time and date at job start Tue Mar 31 2020 19:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35909 * 116.99959 * 2 1 4 4 C 1.39144 * 120.47626 * 180.02562 * 3 2 1 5 5 C 1.38539 * 118.37543 * 179.72234 * 4 3 2 6 6 C 1.38257 * 119.21657 * 0.50010 * 5 4 3 7 7 C 1.50699 * 119.55006 * 179.76640 * 6 5 4 8 8 C 1.50703 * 109.47210 * 124.72288 * 7 6 5 9 9 O 1.21285 * 119.99753 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.47151 * 120.98286 * 359.72406 * 10 8 7 12 12 C 1.53295 * 108.38744 * 230.80800 * 11 10 8 13 13 O 1.42959 * 109.22034 * 307.69425 * 12 11 10 14 14 C 1.42968 * 114.16695 * 62.58189 * 13 12 11 15 15 H 1.09000 * 109.51370 * 57.33974 * 14 13 12 16 16 C 1.52999 * 109.55381 * 177.46994 * 14 13 12 17 17 N 1.46501 * 109.47035 * 299.76890 * 16 14 13 18 18 C 1.36940 * 119.99770 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00123 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99604 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00609 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99777 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46816 * 90.00115 * 22 20 18 24 24 H 1.48495 * 109.46982 * 210.00452 * 22 20 18 25 25 H 1.48507 * 109.46952 * 330.00303 * 22 20 18 26 26 C 1.47156 * 120.98466 * 180.02562 * 10 8 7 27 27 N 1.31837 * 120.89055 * 359.48987 * 6 5 4 28 28 C 1.31843 * 121.78295 * 0.25763 * 27 6 5 29 29 H 1.09007 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47479 * 300.00093 * 1 2 3 31 31 H 1.09004 * 109.47457 * 60.00603 * 1 2 3 32 32 H 1.07994 * 120.81001 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.38604 * 180.26357 * 5 4 3 34 34 H 1.09002 * 109.47587 * 4.72911 * 7 6 5 35 35 H 1.08996 * 109.47438 * 244.72428 * 7 6 5 36 36 H 1.09006 * 109.68007 * 350.53290 * 11 10 8 37 37 H 1.09000 * 109.68083 * 111.08039 * 11 10 8 38 38 H 1.08999 * 109.51139 * 187.77108 * 12 11 10 39 39 H 1.08999 * 109.51266 * 67.61682 * 12 11 10 40 40 H 1.09001 * 109.47459 * 59.77330 * 16 14 13 41 41 H 1.09000 * 109.46872 * 179.77144 * 16 14 13 42 42 H 0.97001 * 119.99882 * 0.02562 * 17 16 14 43 43 H 0.96995 * 120.00599 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.67998 * 248.91928 * 26 10 8 45 45 H 1.09002 * 109.67911 * 9.43147 * 26 10 8 46 46 H 1.07995 * 119.66280 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0181 2.5520 -0.0064 6 6 3.2077 3.6721 -0.0010 7 6 3.8343 5.0427 -0.0020 8 6 3.3016 5.8377 -1.1662 9 8 2.4924 5.3405 -1.9205 10 7 3.7235 7.1016 -1.3685 11 6 4.6991 7.7287 -0.4628 12 6 4.1462 9.0894 -0.0237 13 8 3.7784 9.8436 -1.1811 14 6 2.7368 9.2499 -1.9600 15 1 1.8554 9.1010 -1.3362 16 6 2.3849 10.1699 -3.1307 17 7 1.9256 11.4621 -2.6154 18 6 1.5526 12.4524 -3.4845 19 1 1.5974 12.2809 -4.5499 20 6 1.1169 13.6765 -2.9962 21 7 1.0628 13.8856 -1.6979 22 14 0.6088 15.0277 -4.1818 23 1 -0.8421 14.9089 -4.4751 24 1 0.8833 16.3524 -3.5696 25 1 1.3812 14.8957 -5.4433 26 6 3.2172 7.8976 -2.4979 27 7 1.8944 3.5574 -0.0004 28 6 1.3001 2.3805 0.0001 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 4.0432 0.4031 -0.0005 33 1 5.0931 2.6552 -0.0113 34 1 4.9164 4.9476 -0.0920 35 1 3.5907 5.5543 0.9291 36 1 4.8495 7.0943 0.4108 37 1 5.6465 7.8680 -0.9834 38 1 4.9102 9.6296 0.5352 39 1 3.2699 8.9399 0.6070 40 1 3.2672 10.3197 -3.7531 41 1 1.5937 9.7141 -3.7259 42 1 1.8858 11.6161 -1.6585 43 1 0.7587 14.7411 -1.3567 44 1 4.0152 8.0539 -3.2237 45 1 2.3868 7.3747 -2.9724 46 1 0.2215 2.3264 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570149672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:50 Heat of formation + Delta-G solvation = -52.502644 kcal Electronic energy + Delta-G solvation = -28315.631124 eV Core-core repulsion = 24206.900704 eV Total energy + Delta-G solvation = -4108.730420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10763 -40.21708 -38.73568 -37.96793 -35.00542 -34.32537 -32.88718 -32.73564 -32.04787 -30.17488 -28.87330 -28.00127 -27.37129 -25.38867 -23.76262 -23.45425 -22.83493 -22.05215 -20.80344 -19.23373 -18.52327 -17.67182 -17.18473 -17.02592 -16.66682 -16.24614 -16.17161 -15.65516 -15.54913 -15.01160 -14.65340 -14.59064 -14.41559 -14.33557 -14.10348 -13.48789 -13.34368 -13.28176 -13.11137 -12.66962 -12.59282 -12.45693 -12.32379 -12.25123 -11.99258 -11.75360 -11.53013 -10.96731 -10.86521 -10.76190 -10.42235 -10.09029 -10.01831 -9.85701 -9.81094 -9.65810 -9.59374 -8.82949 -8.68979 -8.47603 -6.85065 -5.69224 -2.97701 0.77300 0.98093 2.58288 2.75151 2.81010 3.48319 3.48531 3.53035 3.55091 3.95139 3.99041 4.28039 4.30364 4.41031 4.58641 4.62585 4.72200 4.75682 4.77073 4.89072 4.90937 5.05534 5.06639 5.10757 5.12577 5.20193 5.26037 5.35328 5.48463 5.61395 5.63454 5.70463 5.72503 5.74884 5.92903 6.01102 6.13021 6.31472 6.37565 6.60492 6.73911 6.80025 7.29210 7.50245 7.73836 7.75384 8.12767 8.48976 9.60643 10.18302 10.54474 11.53609 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.002020 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.314030 B =13860.104562 C =14624.805460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.072 3.928 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.105 3.895 7 C -0.086 4.086 8 C 0.521 3.479 9 O -0.522 6.522 10 N -0.617 5.617 11 C 0.071 3.929 12 C 0.045 3.955 13 O -0.357 6.357 14 C 0.074 3.926 15 H 0.063 0.937 16 C 0.163 3.837 17 N -0.726 5.726 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.087 3.913 27 N -0.419 5.419 28 C 0.027 3.973 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.028 0.972 41 H 0.035 0.965 42 H 0.388 0.612 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 -28.421 8.396 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.025 3.975 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.034 4.034 7 C -0.126 4.126 8 C 0.308 3.692 9 O -0.396 6.396 10 N -0.352 5.352 11 C -0.052 4.052 12 C -0.033 4.033 13 O -0.275 6.275 14 C 0.015 3.985 15 H 0.081 0.919 16 C 0.035 3.965 17 N -0.370 5.370 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.036 4.036 27 N -0.128 5.128 28 C -0.132 4.132 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.222 0.778 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.119 0.881 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.016 -27.891 7.777 29.793 hybrid contribution -0.098 -0.029 -0.142 0.175 sum 6.918 -27.920 7.634 29.760 Atomic orbital electron populations 1.23141 0.77826 1.04378 1.01840 1.86058 1.21810 1.26101 1.88600 1.20114 0.93320 0.85787 0.98306 1.20853 0.91667 0.98712 1.02319 1.21778 1.01226 0.91619 0.99850 1.20440 0.89344 0.94191 0.99397 1.20561 1.01018 0.91831 0.99214 1.20255 0.81533 0.81189 0.86187 1.90730 1.32694 1.69241 1.46981 1.48158 1.44432 1.13172 1.29452 1.22526 0.92575 0.95898 0.94192 1.22917 1.00168 0.91189 0.89068 1.88164 1.55305 1.46676 1.37308 1.22784 0.89738 0.91644 0.94328 0.91924 1.20625 0.96876 0.87006 0.91980 1.42214 1.78635 1.09422 1.06751 1.19233 1.35779 0.92287 0.89635 0.91156 1.24745 1.02497 0.97960 0.95872 1.69673 1.53511 1.24125 1.10755 0.86175 0.78291 0.81707 0.79930 1.21780 1.21809 1.20774 1.22299 1.00969 0.91871 0.88415 1.67294 1.11413 1.26365 1.07707 1.22900 1.00571 0.86878 1.02854 0.87867 0.92301 0.92194 0.83960 0.83997 0.87326 0.87081 0.89171 0.90288 0.87789 0.92812 0.95394 0.94714 0.77828 0.93593 0.90551 0.88131 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.73 10.51 -19.45 -0.20 -2.93 16 3 C 0.07 0.71 6.71 -39.07 -0.26 0.44 16 4 C -0.11 -0.94 10.13 -39.13 -0.40 -1.33 16 5 C -0.12 -1.04 9.70 -39.46 -0.38 -1.42 16 6 C 0.11 1.14 5.76 -82.58 -0.48 0.67 16 7 C -0.09 -0.77 4.47 -29.03 -0.13 -0.90 16 8 C 0.52 6.93 7.64 -10.99 -0.08 6.85 16 9 O -0.52 -9.12 14.80 5.55 0.08 -9.04 16 10 N -0.62 -7.83 3.02 -172.30 -0.52 -8.35 16 11 C 0.07 0.68 6.54 -3.53 -0.02 0.66 16 12 C 0.04 0.55 6.98 37.31 0.26 0.81 16 13 O -0.36 -6.27 10.14 -35.23 -0.36 -6.63 16 14 C 0.07 1.30 2.86 -26.60 -0.08 1.22 16 15 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.16 3.44 5.96 -4.04 -0.02 3.42 16 17 N -0.73 -19.29 5.50 -59.91 -0.33 -19.62 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 22 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 C 0.09 1.29 5.93 -3.55 -0.02 1.27 16 27 N -0.42 -5.50 9.21 -9.35 -0.09 -5.58 16 28 C 0.03 0.30 10.22 -17.37 -0.18 0.12 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 31 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 0.71 7.94 -52.49 -0.42 0.29 16 34 H 0.11 0.59 7.74 -51.93 -0.40 0.19 16 35 H 0.11 0.83 7.65 -51.93 -0.40 0.43 16 36 H 0.09 0.54 6.05 -51.93 -0.31 0.23 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.39 10.94 7.55 -40.82 -0.31 10.63 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.59 7.08 -51.93 -0.37 1.23 16 46 H 0.16 1.38 6.32 -52.49 -0.33 1.05 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -38.12 380.37 -7.72 -45.83 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.69 Total: 5.60 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.05 Total: 5.33 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.21 Total: -61.80 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.48 Total: -18.60 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.12 -7.72 -45.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570149672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.669 kcal (2) G-P(sol) polarization free energy of solvation -38.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds