Wall clock time and date at job start Tue Mar 31 2020 19:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35909 * 116.99959 * 2 1 4 4 C 1.39144 * 120.47626 * 180.02562 * 3 2 1 5 5 C 1.38539 * 118.37543 * 179.72234 * 4 3 2 6 6 C 1.38257 * 119.21657 * 0.50010 * 5 4 3 7 7 C 1.50699 * 119.55006 * 179.76640 * 6 5 4 8 8 C 1.50703 * 109.47210 * 124.72288 * 7 6 5 9 9 O 1.21285 * 119.99753 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.47151 * 120.98286 * 359.72406 * 10 8 7 12 12 C 1.53295 * 108.38744 * 230.80800 * 11 10 8 13 13 O 1.42959 * 109.22034 * 307.69425 * 12 11 10 14 14 C 1.42968 * 114.16695 * 62.58189 * 13 12 11 15 15 H 1.09000 * 109.51370 * 57.33974 * 14 13 12 16 16 C 1.52999 * 109.55381 * 177.46994 * 14 13 12 17 17 N 1.46501 * 109.47035 * 299.76890 * 16 14 13 18 18 C 1.36940 * 119.99770 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00123 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99604 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00609 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99777 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46816 * 90.00115 * 22 20 18 24 24 H 1.48495 * 109.46982 * 210.00452 * 22 20 18 25 25 H 1.48507 * 109.46952 * 330.00303 * 22 20 18 26 26 C 1.47156 * 120.98466 * 180.02562 * 10 8 7 27 27 N 1.31837 * 120.89055 * 359.48987 * 6 5 4 28 28 C 1.31843 * 121.78295 * 0.25763 * 27 6 5 29 29 H 1.09007 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47479 * 300.00093 * 1 2 3 31 31 H 1.09004 * 109.47457 * 60.00603 * 1 2 3 32 32 H 1.07994 * 120.81001 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.38604 * 180.26357 * 5 4 3 34 34 H 1.09002 * 109.47587 * 4.72911 * 7 6 5 35 35 H 1.08996 * 109.47438 * 244.72428 * 7 6 5 36 36 H 1.09006 * 109.68007 * 350.53290 * 11 10 8 37 37 H 1.09000 * 109.68083 * 111.08039 * 11 10 8 38 38 H 1.08999 * 109.51139 * 187.77108 * 12 11 10 39 39 H 1.08999 * 109.51266 * 67.61682 * 12 11 10 40 40 H 1.09001 * 109.47459 * 59.77330 * 16 14 13 41 41 H 1.09000 * 109.46872 * 179.77144 * 16 14 13 42 42 H 0.97001 * 119.99882 * 0.02562 * 17 16 14 43 43 H 0.96995 * 120.00599 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.67998 * 248.91928 * 26 10 8 45 45 H 1.09002 * 109.67911 * 9.43147 * 26 10 8 46 46 H 1.07995 * 119.66280 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0181 2.5520 -0.0064 6 6 3.2077 3.6721 -0.0010 7 6 3.8343 5.0427 -0.0020 8 6 3.3016 5.8377 -1.1662 9 8 2.4924 5.3405 -1.9205 10 7 3.7235 7.1016 -1.3685 11 6 4.6991 7.7287 -0.4628 12 6 4.1462 9.0894 -0.0237 13 8 3.7784 9.8436 -1.1811 14 6 2.7368 9.2499 -1.9600 15 1 1.8554 9.1010 -1.3362 16 6 2.3849 10.1699 -3.1307 17 7 1.9256 11.4621 -2.6154 18 6 1.5526 12.4524 -3.4845 19 1 1.5974 12.2809 -4.5499 20 6 1.1169 13.6765 -2.9962 21 7 1.0628 13.8856 -1.6979 22 14 0.6088 15.0277 -4.1818 23 1 -0.8421 14.9089 -4.4751 24 1 0.8833 16.3524 -3.5696 25 1 1.3812 14.8957 -5.4433 26 6 3.2172 7.8976 -2.4979 27 7 1.8944 3.5574 -0.0004 28 6 1.3001 2.3805 0.0001 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 4.0432 0.4031 -0.0005 33 1 5.0931 2.6552 -0.0113 34 1 4.9164 4.9476 -0.0920 35 1 3.5907 5.5543 0.9291 36 1 4.8495 7.0943 0.4108 37 1 5.6465 7.8680 -0.9834 38 1 4.9102 9.6296 0.5352 39 1 3.2699 8.9399 0.6070 40 1 3.2672 10.3197 -3.7531 41 1 1.5937 9.7141 -3.7259 42 1 1.8858 11.6161 -1.6585 43 1 0.7587 14.7411 -1.3567 44 1 4.0152 8.0539 -3.2237 45 1 2.3868 7.3747 -2.9724 46 1 0.2215 2.3264 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570149672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:49 Heat of formation + Delta-G solvation = -81.499388 kcal Electronic energy + Delta-G solvation = -28316.888517 eV Core-core repulsion = 24206.900704 eV Total energy + Delta-G solvation = -4109.987813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84470 -41.19448 -39.64914 -38.89235 -36.65159 -35.68852 -34.04779 -33.41243 -33.37314 -31.83319 -29.67701 -28.95720 -28.21257 -26.87540 -24.95377 -24.44011 -23.95764 -23.14972 -22.19800 -20.19570 -19.24561 -19.13170 -18.45179 -17.92671 -17.75952 -17.23406 -16.84242 -16.82236 -16.64914 -16.26711 -15.95140 -15.78087 -15.26770 -15.16595 -15.07797 -14.98508 -14.59898 -14.33012 -14.11029 -13.94549 -13.93326 -13.45175 -13.16816 -13.04129 -12.88024 -12.78798 -12.74014 -12.58405 -12.32572 -12.24651 -12.04211 -11.87628 -11.59671 -11.16422 -10.96028 -10.85559 -10.65206 -10.35005 -9.57971 -9.36387 -9.01404 -7.94139 -5.23945 0.09888 0.30752 1.47170 1.50071 1.58453 1.61731 1.84911 2.22639 2.56331 2.75421 2.79620 3.28678 3.39240 3.52920 3.64048 3.64887 3.73086 3.92852 3.98129 4.05533 4.11130 4.20718 4.28627 4.32794 4.36497 4.37768 4.43909 4.49900 4.52357 4.58296 4.65771 4.68565 4.72167 4.77683 4.91943 4.93463 4.99001 5.09103 5.09765 5.32463 5.47770 5.52089 6.19235 6.24649 6.28690 6.35936 7.03761 7.15495 7.33128 8.06947 8.32329 9.29574 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.002020 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.314030 B =13860.104562 C =14624.805460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.114 4.114 6 C 0.080 3.920 7 C -0.078 4.078 8 C 0.516 3.484 9 O -0.573 6.573 10 N -0.617 5.617 11 C 0.076 3.924 12 C 0.034 3.966 13 O -0.388 6.388 14 C 0.089 3.911 15 H 0.043 0.957 16 C 0.160 3.840 17 N -0.740 5.740 18 C -0.248 4.248 19 H 0.078 0.922 20 C -0.078 4.078 21 N -0.969 5.969 22 Si 0.979 3.021 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.097 3.903 27 N -0.462 5.462 28 C 0.004 3.996 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.167 0.833 33 H 0.183 0.817 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.039 0.961 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.140 -29.828 8.766 32.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.019 3.981 4 C -0.142 4.142 5 C -0.134 4.134 6 C -0.059 4.059 7 C -0.118 4.118 8 C 0.305 3.695 9 O -0.451 6.451 10 N -0.352 5.352 11 C -0.046 4.046 12 C -0.043 4.043 13 O -0.307 6.307 14 C 0.030 3.970 15 H 0.061 0.939 16 C 0.033 3.967 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.807 3.193 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.193 1.193 26 C -0.026 4.026 27 N -0.172 5.172 28 C -0.154 4.154 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.184 0.816 33 H 0.200 0.800 34 H 0.173 0.827 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.147 0.853 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.343 -29.335 8.145 31.846 hybrid contribution -0.806 0.323 -0.223 0.897 sum 8.537 -29.012 7.922 31.262 Atomic orbital electron populations 1.23379 0.76357 1.05986 1.02143 1.86043 1.23427 1.25691 1.88455 1.20284 0.94109 0.85712 0.98038 1.21282 0.91405 0.99977 1.01539 1.22180 1.02952 0.90512 0.97711 1.20887 0.89070 0.95844 1.00059 1.20707 1.03249 0.90308 0.97526 1.21097 0.80592 0.81151 0.86648 1.90711 1.34983 1.70361 1.49059 1.48272 1.44705 1.13059 1.29130 1.22747 0.91822 0.94655 0.95373 1.23277 1.00780 0.92845 0.87442 1.88097 1.54887 1.48619 1.39061 1.22402 0.89575 0.92058 0.92929 0.93939 1.20767 0.96751 0.85586 0.93616 1.42401 1.78885 1.10975 1.05976 1.19674 1.34938 0.93016 0.90349 0.90437 1.25645 1.03235 1.00505 0.97633 1.69841 1.54947 1.24531 1.12676 0.85065 0.77917 0.78192 0.78108 1.21351 1.21997 1.19296 1.21974 1.00829 0.90396 0.89449 1.67239 1.13199 1.27544 1.09186 1.23032 1.01151 0.87172 1.04086 0.85583 0.91625 0.92334 0.81596 0.80019 0.82742 0.85287 0.84669 0.88568 0.85340 0.93435 0.95050 0.94337 0.79285 0.93979 0.89562 0.89770 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -5.43 10.51 -92.53 -0.97 -6.40 16 3 C 0.07 1.26 6.71 22.60 0.15 1.41 16 4 C -0.12 -1.74 10.13 22.56 0.23 -1.52 16 5 C -0.11 -1.56 9.70 22.35 0.22 -1.34 16 6 C 0.08 1.60 5.76 42.56 0.25 1.85 16 7 C -0.08 -1.16 4.47 29.10 0.13 -1.03 16 8 C 0.52 12.97 7.64 87.66 0.67 13.64 16 9 O -0.57 -20.28 14.80 -3.05 -0.05 -20.32 16 10 N -0.62 -14.60 3.02 -817.42 -2.47 -17.07 16 11 C 0.08 1.17 6.54 86.35 0.57 1.74 16 12 C 0.03 0.76 6.98 72.08 0.50 1.26 16 13 O -0.39 -13.56 10.14 -148.98 -1.51 -15.07 16 14 C 0.09 3.20 2.86 30.68 0.09 3.29 16 15 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 16 C 0.16 6.88 5.96 86.38 0.51 7.40 16 17 N -0.74 -40.29 5.50 -343.45 -1.89 -42.18 16 18 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 21 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 22 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C 0.10 2.88 5.93 86.34 0.51 3.39 16 27 N -0.46 -12.18 9.21 -183.49 -1.69 -13.87 16 28 C 0.00 0.08 10.22 84.80 0.87 0.95 16 29 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.07 0.57 7.68 -2.39 -0.02 0.55 16 31 H 0.06 0.60 7.68 -2.39 -0.02 0.58 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.18 0.87 7.94 -2.91 -0.02 0.84 16 34 H 0.15 0.80 7.74 -2.39 -0.02 0.78 16 35 H 0.13 1.44 7.65 -2.39 -0.02 1.43 16 36 H 0.14 0.90 6.05 -2.38 -0.01 0.89 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.38 21.94 7.55 -92.71 -0.70 21.24 16 43 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.08 2.77 7.08 -2.39 -0.02 2.75 16 46 H 0.16 3.07 6.32 -2.91 -0.02 3.05 16 Total: -1.00 -86.62 380.37 1.15 -85.47 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.30 Total: 26.66 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 7.11 Total: 14.44 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -5.76 Total: -134.32 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.53 Total: -41.79 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -86.62 1.15 -85.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570149672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.973 kcal (2) G-P(sol) polarization free energy of solvation -86.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds