Wall clock time and date at job start Tue Mar 31 2020 18:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46509 * 119.99620 * 2 1 4 4 C 1.52996 * 109.46877 * 269.99771 * 3 2 1 5 5 H 1.09002 * 109.46821 * 60.00538 * 4 3 2 6 6 O 1.42896 * 109.47353 * 300.00188 * 4 3 2 7 7 C 1.52999 * 109.46764 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.46987 * 185.00295 * 7 4 3 9 9 C 1.36942 * 119.99906 * 180.02562 * 8 7 4 10 10 H 1.07997 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.38819 * 119.99657 * 179.97438 * 9 8 7 12 12 N 1.31614 * 119.99985 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46723 * 89.99867 * 13 11 9 15 15 H 1.48494 * 109.47234 * 210.00208 * 13 11 9 16 16 H 1.48498 * 109.47280 * 330.00575 * 13 11 9 17 17 C 1.34780 * 120.00489 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99993 * 180.02562 * 17 2 1 19 19 C 1.50694 * 119.99531 * 0.02562 * 17 2 1 20 20 N 1.46508 * 109.46844 * 179.97438 * 19 17 2 21 21 C 1.34780 * 119.99852 * 179.97438 * 20 19 17 22 22 O 1.21557 * 120.00061 * 0.02562 * 21 20 19 23 23 C 1.47845 * 119.99555 * 180.02562 * 21 20 19 24 24 C 1.39575 * 120.13807 * 180.02562 * 23 21 20 25 25 C 1.37966 * 119.85100 * 179.97438 * 24 23 21 26 26 C 1.38360 * 120.14194 * 359.97438 * 25 24 23 27 27 C 1.38356 * 120.29558 * 0.02562 * 26 25 24 28 28 C 1.37965 * 120.14370 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46829 * 269.99740 * 1 2 3 30 30 H 1.08993 * 109.47276 * 30.00088 * 1 2 3 31 31 H 1.09001 * 109.46841 * 150.00468 * 1 2 3 32 32 H 1.08997 * 109.47003 * 30.00019 * 3 2 1 33 33 H 1.09002 * 109.46956 * 150.00392 * 3 2 1 34 34 H 0.96696 * 114.00008 * 299.99541 * 6 4 3 35 35 H 1.09003 * 109.47212 * 304.99849 * 7 4 3 36 36 H 1.08997 * 109.47601 * 65.00628 * 7 4 3 37 37 H 0.97000 * 120.00565 * 359.97438 * 8 7 4 38 38 H 0.97006 * 119.99906 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.47310 * 60.00102 * 19 17 2 40 40 H 1.08996 * 109.47599 * 299.99514 * 19 17 2 41 41 H 0.97002 * 119.99932 * 0.02562 * 20 19 17 42 42 H 1.07998 * 120.08057 * 359.70005 * 24 23 21 43 43 H 1.08000 * 119.93065 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.85327 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.93243 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.07139 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.4999 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1161 7 6 3.2179 3.0352 -1.4425 8 7 3.3578 3.5183 -2.8184 9 6 4.0129 4.6948 -3.0677 10 1 4.4261 5.2665 -2.2500 11 6 4.1459 5.1523 -4.3716 12 7 3.6419 4.4556 -5.3681 13 14 5.0389 6.7574 -4.7116 14 1 6.4832 6.4849 -4.9233 15 1 4.4712 7.3915 -5.9284 16 1 4.8723 7.6715 -3.5533 17 6 2.1390 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0010 19 6 1.3855 -2.4722 0.0005 20 7 2.3376 -3.5858 0.0005 21 6 1.8884 -4.8565 0.0010 22 8 0.6933 -5.0786 0.0010 23 6 2.8492 -5.9801 0.0016 24 6 2.3873 -7.2972 0.0016 25 6 3.2892 -8.3413 0.0016 26 6 4.6488 -8.0849 0.0011 27 6 5.1133 -6.7816 0.0011 28 6 4.2220 -5.7284 0.0011 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 4.0872 0.5462 -1.7126 35 1 2.6708 3.7709 -0.8529 36 1 4.2061 2.8838 -1.0084 37 1 2.9870 3.0047 -3.5530 38 1 3.7345 4.7755 -6.2791 39 1 0.7592 -2.5302 -0.8897 40 1 0.7585 -2.5299 0.8903 41 1 3.2913 -3.4084 0.0009 42 1 1.3263 -7.4987 0.0061 43 1 2.9332 -9.3609 0.0012 44 1 5.3507 -8.9057 0.0015 45 1 6.1758 -6.5882 0.0002 46 1 4.5859 -4.7115 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571595564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:53 Heat of formation + Delta-G solvation = -73.988609 kcal Electronic energy + Delta-G solvation = -27943.401549 eV Core-core repulsion = 23833.739428 eV Total energy + Delta-G solvation = -4109.662121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74639 -39.96084 -38.50930 -37.37889 -35.46266 -34.79961 -34.00051 -31.85405 -31.34512 -31.29893 -29.87340 -28.00142 -27.01629 -25.18868 -23.90078 -22.90124 -22.54657 -21.19526 -20.78447 -19.77566 -18.55605 -17.22179 -17.16626 -16.79688 -16.47054 -16.30760 -16.03140 -15.56503 -15.19642 -15.09505 -14.80791 -14.63360 -14.42791 -14.04045 -13.93229 -13.68913 -13.40654 -13.23231 -13.02588 -12.97096 -12.65813 -12.61143 -12.34233 -12.13564 -12.06836 -11.55224 -11.48851 -10.94791 -10.81924 -10.70959 -10.32762 -10.17389 -10.12479 -9.78681 -9.64698 -9.57077 -9.39370 -9.28881 -8.89868 -8.63960 -6.92399 -5.75081 -3.04636 0.47180 0.97062 2.36520 2.48596 2.54871 3.05623 3.43686 3.48247 3.50328 3.51461 4.14441 4.33690 4.44686 4.54598 4.56725 4.73352 4.80267 4.85093 4.96443 4.97059 4.98764 5.06517 5.09754 5.18013 5.29636 5.40486 5.47043 5.52653 5.58091 5.62926 5.69938 5.89514 5.93432 5.97979 5.99423 6.04362 6.19047 6.32945 6.47209 6.50833 6.71636 7.11109 7.17617 7.68574 7.84573 7.91440 8.15969 8.43085 9.54369 10.12223 10.47661 11.47280 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.001975 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.140679 B =14173.828152 C =15157.789168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.084 3.916 4 C 0.086 3.914 5 H 0.096 0.904 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.516 3.484 18 O -0.534 6.534 19 C 0.103 3.897 20 N -0.712 5.712 21 C 0.562 3.438 22 O -0.540 6.540 23 C -0.135 4.135 24 C -0.060 4.060 25 C -0.130 4.130 26 C -0.094 4.094 27 C -0.127 4.127 28 C -0.083 4.083 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.374 0.626 35 H 0.025 0.975 36 H 0.021 0.979 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.412 0.588 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 -23.500 16.007 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C -0.039 4.039 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.303 3.697 18 O -0.411 6.411 19 C -0.025 4.025 20 N -0.368 5.368 21 C 0.350 3.650 22 O -0.418 6.418 23 C -0.138 4.138 24 C -0.079 4.079 25 C -0.148 4.148 26 C -0.113 4.113 27 C -0.145 4.145 28 C -0.102 4.102 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.221 0.779 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.222 0.778 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.252 0.748 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.780 -23.462 15.641 28.600 hybrid contribution 1.184 1.063 -0.159 1.599 sum -3.597 -22.398 15.481 27.464 Atomic orbital electron populations 1.21926 0.79053 1.04110 1.02088 1.47595 1.07125 1.05831 1.72974 1.22323 0.98315 0.84300 0.98946 1.22492 0.95800 0.88374 0.90837 0.88591 1.86546 1.33046 1.58888 1.56808 1.21233 0.96771 0.92442 0.89796 1.42248 1.68028 1.25327 1.01392 1.19221 1.28171 0.97865 0.92176 0.91256 1.24771 1.01488 0.99076 0.95631 1.69681 1.50188 1.39296 0.98633 0.86176 0.79340 0.83205 0.77364 1.21696 1.21745 1.20784 1.20287 0.88021 0.85271 0.76105 1.90653 1.13665 1.86858 1.49939 1.21114 0.92250 0.84336 1.04753 1.45628 1.11383 1.04559 1.75209 1.18256 0.88203 0.82469 0.76117 1.90774 1.16145 1.84840 1.50035 1.19875 0.93307 0.93771 1.06820 1.21296 1.00816 0.90884 0.94856 1.21182 0.93193 0.99287 1.01152 1.21420 0.95828 0.97033 0.96977 1.21163 1.00108 0.92491 1.00727 1.21431 0.92113 0.99937 0.96718 0.92112 0.90201 0.90747 0.89342 0.89308 0.77882 0.95778 0.96130 0.77755 0.93486 0.88080 0.88379 0.74832 0.84587 0.85249 0.85502 0.85170 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.24 59.84 0.61 1.14 16 2 N -0.60 -6.48 2.83 -181.57 -0.51 -6.99 16 3 C 0.08 1.02 5.15 -4.04 -0.02 0.99 16 4 C 0.09 1.38 3.27 -26.73 -0.09 1.29 16 5 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 6 O -0.55 -9.97 12.09 -43.91 -0.53 -10.50 16 7 C 0.13 2.48 5.90 -4.04 -0.02 2.46 16 8 N -0.73 -18.74 5.55 -59.91 -0.33 -19.07 16 9 C -0.24 -6.92 9.99 -15.05 -0.15 -7.07 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.52 6.12 7.25 -10.99 -0.08 6.04 16 18 O -0.53 -7.66 14.04 -3.12 -0.04 -7.71 16 19 C 0.10 1.03 4.71 -5.19 -0.02 1.00 16 20 N -0.71 -7.54 5.48 -62.43 -0.34 -7.88 16 21 C 0.56 6.52 7.77 -12.33 -0.10 6.43 16 22 O -0.54 -7.65 16.35 5.32 0.09 -7.57 16 23 C -0.13 -1.33 5.87 -104.97 -0.62 -1.95 16 24 C -0.06 -0.53 9.60 -39.18 -0.38 -0.90 16 25 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16 26 C -0.09 -0.59 10.04 -39.49 -0.40 -0.99 16 27 C -0.13 -0.88 10.03 -39.64 -0.40 -1.27 16 28 C -0.08 -0.69 9.54 -39.19 -0.37 -1.06 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 32 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 34 H 0.37 6.36 8.45 45.56 0.38 6.74 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.39 10.84 7.67 -40.82 -0.31 10.52 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.10 0.99 7.40 -51.93 -0.38 0.61 16 40 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 41 H 0.41 4.16 5.47 -40.82 -0.22 3.94 16 42 H 0.14 1.19 7.65 -52.49 -0.40 0.78 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.50 8.06 -52.48 -0.42 0.07 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.93 6.41 -52.48 -0.34 0.59 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -36.18 389.20 -8.39 -44.58 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -5.76 Total: 15.37 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.52 Total: 4.33 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.46 Total: -61.99 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.49 Total: -25.77 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.18 -8.39 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571595564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.413 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds