Wall clock time and date at job start Tue Mar 31 2020 18:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46509 * 119.99620 * 2 1 4 4 C 1.52996 * 109.46877 * 269.99771 * 3 2 1 5 5 H 1.09002 * 109.46821 * 60.00538 * 4 3 2 6 6 O 1.42896 * 109.47353 * 300.00188 * 4 3 2 7 7 C 1.52999 * 109.46764 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.46987 * 185.00295 * 7 4 3 9 9 C 1.36942 * 119.99906 * 180.02562 * 8 7 4 10 10 H 1.07997 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.38819 * 119.99657 * 179.97438 * 9 8 7 12 12 N 1.31614 * 119.99985 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46723 * 89.99867 * 13 11 9 15 15 H 1.48494 * 109.47234 * 210.00208 * 13 11 9 16 16 H 1.48498 * 109.47280 * 330.00575 * 13 11 9 17 17 C 1.34780 * 120.00489 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99993 * 180.02562 * 17 2 1 19 19 C 1.50694 * 119.99531 * 0.02562 * 17 2 1 20 20 N 1.46508 * 109.46844 * 179.97438 * 19 17 2 21 21 C 1.34780 * 119.99852 * 179.97438 * 20 19 17 22 22 O 1.21557 * 120.00061 * 0.02562 * 21 20 19 23 23 C 1.47845 * 119.99555 * 180.02562 * 21 20 19 24 24 C 1.39575 * 120.13807 * 180.02562 * 23 21 20 25 25 C 1.37966 * 119.85100 * 179.97438 * 24 23 21 26 26 C 1.38360 * 120.14194 * 359.97438 * 25 24 23 27 27 C 1.38356 * 120.29558 * 0.02562 * 26 25 24 28 28 C 1.37965 * 120.14370 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46829 * 269.99740 * 1 2 3 30 30 H 1.08993 * 109.47276 * 30.00088 * 1 2 3 31 31 H 1.09001 * 109.46841 * 150.00468 * 1 2 3 32 32 H 1.08997 * 109.47003 * 30.00019 * 3 2 1 33 33 H 1.09002 * 109.46956 * 150.00392 * 3 2 1 34 34 H 0.96696 * 114.00008 * 299.99541 * 6 4 3 35 35 H 1.09003 * 109.47212 * 304.99849 * 7 4 3 36 36 H 1.08997 * 109.47601 * 65.00628 * 7 4 3 37 37 H 0.97000 * 120.00565 * 359.97438 * 8 7 4 38 38 H 0.97006 * 119.99906 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.47310 * 60.00102 * 19 17 2 40 40 H 1.08996 * 109.47599 * 299.99514 * 19 17 2 41 41 H 0.97002 * 119.99932 * 0.02562 * 20 19 17 42 42 H 1.07998 * 120.08057 * 359.70005 * 24 23 21 43 43 H 1.08000 * 119.93065 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.85327 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.93243 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.07139 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.4999 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1161 7 6 3.2179 3.0352 -1.4425 8 7 3.3578 3.5183 -2.8184 9 6 4.0129 4.6948 -3.0677 10 1 4.4261 5.2665 -2.2500 11 6 4.1459 5.1523 -4.3716 12 7 3.6419 4.4556 -5.3681 13 14 5.0389 6.7574 -4.7116 14 1 6.4832 6.4849 -4.9233 15 1 4.4712 7.3915 -5.9284 16 1 4.8723 7.6715 -3.5533 17 6 2.1390 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0010 19 6 1.3855 -2.4722 0.0005 20 7 2.3376 -3.5858 0.0005 21 6 1.8884 -4.8565 0.0010 22 8 0.6933 -5.0786 0.0010 23 6 2.8492 -5.9801 0.0016 24 6 2.3873 -7.2972 0.0016 25 6 3.2892 -8.3413 0.0016 26 6 4.6488 -8.0849 0.0011 27 6 5.1133 -6.7816 0.0011 28 6 4.2220 -5.7284 0.0011 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 4.0872 0.5462 -1.7126 35 1 2.6708 3.7709 -0.8529 36 1 4.2061 2.8838 -1.0084 37 1 2.9870 3.0047 -3.5530 38 1 3.7345 4.7755 -6.2791 39 1 0.7592 -2.5302 -0.8897 40 1 0.7585 -2.5299 0.8903 41 1 3.2913 -3.4084 0.0009 42 1 1.3263 -7.4987 0.0061 43 1 2.9332 -9.3609 0.0012 44 1 5.3507 -8.9057 0.0015 45 1 6.1758 -6.5882 0.0002 46 1 4.5859 -4.7115 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571595564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:52 Heat of formation + Delta-G solvation = -101.609195 kcal Electronic energy + Delta-G solvation = -27944.599268 eV Core-core repulsion = 23833.739428 eV Total energy + Delta-G solvation = -4110.859839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60343 -40.81563 -39.24411 -38.67910 -36.52565 -35.87960 -35.68108 -33.23541 -32.48533 -31.88626 -31.18181 -29.02282 -27.97635 -26.57213 -24.88532 -24.15991 -23.37217 -22.64243 -21.57712 -20.65198 -19.31960 -19.23994 -18.17309 -17.71917 -17.38692 -17.19095 -16.96063 -16.55708 -16.40841 -16.25786 -16.09001 -15.59205 -15.43613 -15.35830 -14.92082 -14.67034 -14.43647 -14.30576 -14.05576 -13.98251 -13.72854 -13.67725 -13.38331 -13.21755 -12.96374 -12.78032 -12.63821 -12.61984 -12.17306 -12.04095 -12.03027 -11.82686 -11.22498 -11.20944 -10.99318 -10.92670 -10.41637 -9.96450 -9.91869 -9.62228 -9.02447 -7.95904 -5.25821 -0.17285 0.40414 1.44275 1.46384 1.48562 1.56897 1.64468 1.77535 2.23504 2.54888 2.88357 3.30667 3.36420 3.53114 3.63237 3.76382 3.89695 4.01205 4.05364 4.13798 4.22550 4.23182 4.26136 4.33677 4.45933 4.48151 4.51276 4.52822 4.66523 4.78738 4.84606 4.91925 4.93541 5.05018 5.10858 5.23656 5.32446 5.38945 5.44035 5.46924 5.50298 5.93742 6.24854 6.25096 6.33463 6.80211 6.97403 7.02687 7.31227 8.07754 8.30010 9.27513 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.001975 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.140679 B =14173.828152 C =15157.789168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.601 5.601 3 C 0.096 3.904 4 C 0.095 3.905 5 H 0.089 0.911 6 O -0.566 6.566 7 C 0.124 3.876 8 N -0.742 5.742 9 C -0.247 4.247 10 H 0.079 0.921 11 C -0.080 4.080 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.288 1.288 15 H -0.295 1.295 16 H -0.266 1.266 17 C 0.512 3.488 18 O -0.564 6.564 19 C 0.106 3.894 20 N -0.710 5.710 21 C 0.560 3.440 22 O -0.573 6.573 23 C -0.158 4.158 24 C -0.075 4.075 25 C -0.130 4.130 26 C -0.089 4.089 27 C -0.131 4.131 28 C -0.091 4.091 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.377 0.623 35 H 0.042 0.958 36 H 0.023 0.977 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.414 0.586 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 -23.959 17.573 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.333 5.333 3 C -0.028 4.028 4 C 0.034 3.966 5 H 0.107 0.893 6 O -0.372 6.372 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.379 4.379 10 H 0.096 0.904 11 C -0.272 4.272 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.215 1.215 15 H -0.222 1.222 16 H -0.191 1.191 17 C 0.300 3.700 18 O -0.443 6.443 19 C -0.021 4.021 20 N -0.365 5.365 21 C 0.349 3.651 22 O -0.454 6.454 23 C -0.161 4.161 24 C -0.094 4.094 25 C -0.148 4.148 26 C -0.107 4.107 27 C -0.149 4.149 28 C -0.110 4.110 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.224 0.776 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.254 0.746 42 H 0.147 0.853 43 H 0.172 0.828 44 H 0.175 0.825 45 H 0.170 0.830 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.339 -23.908 17.270 29.810 hybrid contribution 1.054 1.137 -0.586 1.658 sum -3.285 -22.771 16.684 28.419 Atomic orbital electron populations 1.22193 0.76844 1.04810 1.03959 1.47668 1.08482 1.04951 1.72186 1.22110 0.99123 0.85632 0.95893 1.22427 0.94442 0.86374 0.93326 0.89267 1.86522 1.33488 1.59331 1.57883 1.21452 0.97560 0.94544 0.86822 1.42476 1.67765 1.24746 1.03431 1.19680 1.27212 0.98539 0.92489 0.90357 1.25659 1.03103 1.02794 0.95611 1.69853 1.52248 1.41258 0.98744 0.85082 0.77746 0.79272 0.77293 1.21524 1.22172 1.19054 1.20592 0.87779 0.86044 0.75589 1.90636 1.14968 1.87335 1.51370 1.21160 0.92032 0.83269 1.05647 1.45657 1.11615 1.04547 1.74666 1.18588 0.88120 0.83030 0.75360 1.90740 1.17459 1.85305 1.51925 1.19887 0.93710 0.93558 1.08966 1.21408 1.01057 0.91238 0.95715 1.21490 0.93306 0.99858 1.00127 1.21822 0.96089 0.97683 0.95148 1.21498 1.01027 0.92452 0.99913 1.21563 0.91697 1.00825 0.96891 0.89612 0.89799 0.89870 0.86427 0.89789 0.77556 0.94067 0.95937 0.79492 0.94043 0.87870 0.86656 0.74607 0.85304 0.82846 0.82526 0.83024 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 10.24 127.77 1.31 2.11 16 2 N -0.60 -11.97 2.83 -846.77 -2.39 -14.36 16 3 C 0.10 2.15 5.15 86.38 0.44 2.59 16 4 C 0.09 2.98 3.27 30.59 0.10 3.08 16 5 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 6 O -0.57 -20.75 12.09 -140.68 -1.70 -22.45 16 7 C 0.12 4.75 5.90 86.38 0.51 5.26 16 8 N -0.74 -38.48 5.55 -343.44 -1.91 -40.38 16 9 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 10 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 11 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 12 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 13 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.51 11.77 7.25 87.65 0.64 12.41 16 18 O -0.56 -16.10 14.04 5.27 0.07 -16.03 16 19 C 0.11 2.06 4.71 85.63 0.40 2.47 16 20 N -0.71 -15.19 5.48 -469.70 -2.57 -17.77 16 21 C 0.56 13.37 7.77 86.79 0.67 14.05 16 22 O -0.57 -16.76 16.35 -3.89 -0.06 -16.82 16 23 C -0.16 -3.17 5.87 -20.09 -0.12 -3.29 16 24 C -0.08 -1.34 9.60 22.53 0.22 -1.12 16 25 C -0.13 -1.58 10.03 22.23 0.22 -1.35 16 26 C -0.09 -0.91 10.04 22.33 0.22 -0.69 16 27 C -0.13 -1.58 10.03 22.23 0.22 -1.36 16 28 C -0.09 -1.47 9.54 22.53 0.21 -1.25 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 31 H 0.08 0.92 6.44 -2.39 -0.02 0.90 16 32 H 0.12 1.97 8.07 -2.39 -0.02 1.95 16 33 H 0.08 2.01 7.42 -2.39 -0.02 1.99 16 34 H 0.38 13.01 8.45 -74.06 -0.63 12.38 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.37 21.28 7.67 -92.71 -0.71 20.57 16 38 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 39 H 0.10 1.99 7.40 -2.39 -0.02 1.97 16 40 H 0.12 1.85 8.11 -2.39 -0.02 1.83 16 41 H 0.41 8.53 5.47 -92.71 -0.51 8.02 16 42 H 0.13 2.37 7.65 -2.91 -0.02 2.35 16 43 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 45 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 46 H 0.13 1.92 6.41 -2.91 -0.02 1.90 16 Total: -1.00 -79.03 389.20 -0.70 -79.73 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -0.81 Total: 44.75 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.37 Total: 15.50 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -6.59 Total: -133.37 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -1.69 Total: -55.31 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -79.03 -0.70 -79.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571595564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.878 kcal (2) G-P(sol) polarization free energy of solvation -79.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds